mRNA_M-pyrifera_M_contig75818.17884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75818.17884.1
Unique NamemRNA_M-pyrifera_M_contig75818.17884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A7S3W2M8_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W2M8_EMIHU)

HSP 1 Score: 103 bits (256), Expect = 2.610e-21
Identity = 91/268 (33.96%), Postives = 137/268 (51.12%), Query Frame = 1
Query:   10 VNALVAFIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLR---------RSEKHKDQERYEQKTAGEETRRVTGWIGQG----VTFRPAAVFVIVAFLVLVVLGL-VSLEEIPVGLEPEEVLPDDS-YVSEWLEVQDEHFGAMVSFMQVVLRDFHPGSSSQRSKVGDLVDLLEAHPKVFPPIVS--WVAELEA 762
            ++ L+ F+ VGVG D++I++VDF QR  P  S+ +R+S  +  AG A+ LTSL+ ++AF   A+   PGV+ F + A  + F  +LL  TLF  LL  DERRR A R  CL C+           +E      + + K A    R       +     V  +P A+ VI+AF  L+ LG   ++  IP+G E     PD S YV+   + Q E+F A+ +   +VLRD     +S ++ V  L+  LE+   V  P  +  W+A   A
Sbjct:  341 ISLLMVFVIVGVGVDDVIVVVDFLQRQPPHLSIVERISGALGGAGPAIQLTSLTNLIAFLIAATVDFPGVSYFCLSAGFTLFALFLLTTTLFTALLTFDERRRGAMRLDCLCCIGFGAGDSETGDAEPSSPSHKEDDKRAHSGLRAAVSSAARAYDCFVASKPVALVVILAFTSLIPLGFGFAIGNIPLGAELASYFPDGSPYVAYTADTQ-ENFVALDTPGYLVLRDVKWEDASAQTAVDSLLAALESDDFVIAPYSTNNWLAAYRA 607          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A7D9L4U5_PARCT (Patched domain-containing 3-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L4U5_PARCT)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-17
Identity = 67/255 (26.27%), Postives = 126/255 (49.41%), Query Frame = 1
Query:    1 FNSVNALVAFIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHFGAMVSFMQVVLRDFHPGSSSQRSKVGDLVDLLEAHPKVFPPIVSWVAELEAY 765
            F S+ A++ F+ VGVG D++ IIVD   R++   ++P R+S  M   G AV++T+++ ++AFA G SS  P +  F   AA S    +L  VT+F   ++ D RR  A R   + CL          R+++       + +  W G+ +   P  + V++  + L+ LG+     +    +  ++  D S    +L+  +++F   V    ++  D +    + + K+ +L  ++E +    P + SW AEL+ +
Sbjct:  320 FVSITAILPFLIVGVGIDDMFIIVDQLDRTHSDQTIPKRLSTVMRIVGPAVTMTTMTDLLAFAVGTSSKFPSIVYFCTYAALSIAFAFLFLVTIFVAFMSYDCRRMNAGRRDMVPCLEAPPPRPGAPRWDEPRPQTSNKIMEVW-GRFLMKTPTKIVVVIVSICLLALGIYGTTFVNEEFDRRDLAKDGSEFIRFLDALEDYFTGDVQVDLILEADVNYSDPATKMKINNLSQIIEDNEFYRPTVRSWYAELQRW 573          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A1Z5JYE4_FISSO (SSD domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYE4_FISSO)

HSP 1 Score: 89.4 bits (220), Expect = 1.470e-16
Identity = 78/266 (29.32%), Postives = 127/266 (47.74%), Query Frame = 1
Query:    1 FNSVNALVAFIQVGVGADNLIIIVDFFQRSNPL-------HSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQER--YEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHFGAMVSFMQVVLRDFHPGSS--SQRSKVGDLVDLLEAHPKVFPPIVSWVAELEAY 765
            F  V+ L+ FI +G+G D+  +IV+ F R   +         L  R + ++A AGT++++TS + +VAFA  ++S LP ++SF   AA + F  +    T F   L LDERR+  NR  CL C  R    +D E   +E+      +R    +    +  R   V V++ F  L+  G+     + V       +P+ SY+ ++    DE F +    +  V   F  GS   + R+++ DL   L    ++ P I   V+E EAY
Sbjct:  330 FGPVHNLLPFILLGIGVDDAFVIVNAFNRERKVARSAESNEDLATRSARSLARAGTSITVTSATDLVAFAISSASALPALSSFCAYAAVAIFFLWFFSATFFTACLVLDERRQRDNRRECLVCCTRKNPMEDDEGDVFEEDLV---SRYFRNYHAPAILSRAGKVIVLLFFSGLIAFGVYGAMNLSVEDSTRSFIPEGSYLQDYFAASDEFFPSKGIDLYFV---FERGSDIYASRTELADLESRLSGLSEMPPYIAEPVSE-EAY 588          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A096P8T2_OSTTA (Sterol-sensing domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8T2_OSTTA)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-15
Identity = 62/211 (29.38%), Postives = 108/211 (51.18%), Query Frame = 1
Query:    1 FNSVNALVAFIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANR---HACLFCLRRS-----EKHKDQERYEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHF 609
            F+ +  ++ F+ +GVG D++ +IV+ +          +RM  T+ +AG +V++TS++ V+AF  G+S+ LP + +F   AA   F +Y  QVT F   +ALDERR+   +     CL C   +     + HK Q+   Q+  G+        IG  +      +FV+  F  + + G++   +I V  +    +PDDSY+  W   +D +F
Sbjct:  368 FSPLMNVLPFLLLGVGVDDMFVIVNAYDNVEARVDPVERMGRTLRYAGMSVTVTSITDVIAFLIGSSTSLPALKNFCYYAALGIFFDYFYQVTFFTACVALDERRKAKRQGDVFCCLSCPAEACCTCCQPHKTQKSMLQRLLGQT-------IGTRLGNLKVKIFVVTFFSAMTIGGIIGATKIKVDADVNNFIPDDSYLKLWFADRDAYF 571          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: UPI001425BB54 (patched domain-containing protein 3-like isoform X1 n=3 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425BB54)

HSP 1 Score: 86.7 bits (213), Expect = 1.220e-15
Identity = 67/229 (29.26%), Postives = 120/229 (52.40%), Query Frame = 1
Query:    1 FNSVNALVAFIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQER-YEQKTAGEETRRVT-------GWIGQ-------GVTFRPAA-VFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHFGAMVSFMQVV 639
            FN + ++  F+ +G+G D++ I++  ++++NP  S+ +RM    + A  ++++TSL+ ++AF+ GA +PLP +  F +    +   +Y+ Q+T F   + L  RR  ANRH C  C +   K + + R Y+   AG  T   T        W+ Q           +PA  + V++AF V + L +    ++  GLE +++  DDSY  E   ++DEHF      +Q+V
Sbjct:  318 FNQIVSVTPFLAIGIGLDDMFIMLAAWRQTNPKLSVEERMGLAYSEAAVSITITSLTDILAFSIGAYNPLPAIQIFCLYTGVAIAFDYIYQITFFGACMVLIGRREAANRH-CYTCKKVLPKKEAKSRLYKIFCAGGFTESDTISKNENEPWLMQFFKNYYGPFIMKPAVKILVLIAFAVYIGLAVWGCTQLREGLELKKLAADDSYAFEAFTLEDEHFNEFGPPVQIV 545          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: UPI0006150EE1 (protein still life, isoforms C/SIF type 2 isoform X3 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI0006150EE1)

HSP 1 Score: 85.5 bits (210), Expect = 3.480e-15
Identity = 74/231 (32.03%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   19 LVAFIQVGVGADNLIIIVDFFQRSNPLH---SLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDE--HFGAMVSFMQVVLRDFHPGSSSQRSKVGDLV 696
            ++ F+ + VG DN+ I+V   +R NP     S+PD +   MA  G ++ LTS S  + F  G  S +P V +FS+ A+ S F+N+LLQ+T F  L+ALDE+R   N  + LFC  ++ K   Q+  E +  G        +    +   P  + V+V F V +V  LV +  I +GL+ +  +P+DSYV ++ +  ++    GA V F+        PG +  R  V +++
Sbjct: 1816 VIPFLVLAVGVDNIFILVQTHER-NPKRAQESIPDHIGRIMAKVGPSMLLTSTSECLCFLIGTLSSMPAVNTFSLYASLSIFINFLLQMTAFVSLMALDEQR-FENNLSDLFCCVKTNK---QDTTEDEDFGLVHAIFQRFYTPCLMKTPVRITVLVVFFVALVAHLVLVPNISIGLDQKLSMPEDSYVLKYFQFMEDLLSMGAPVYFVVT------PGLNYSRRNVQNVI 2035          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: UPI000614EDB6 (protein still life, isoform SIF type 1 isoform X2 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI000614EDB6)

HSP 1 Score: 85.5 bits (210), Expect = 3.550e-15
Identity = 74/231 (32.03%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   19 LVAFIQVGVGADNLIIIVDFFQRSNPLH---SLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDE--HFGAMVSFMQVVLRDFHPGSSSQRSKVGDLV 696
            ++ F+ + VG DN+ I+V   +R NP     S+PD +   MA  G ++ LTS S  + F  G  S +P V +FS+ A+ S F+N+LLQ+T F  L+ALDE+R   N  + LFC  ++ K   Q+  E +  G        +    +   P  + V+V F V +V  LV +  I +GL+ +  +P+DSYV ++ +  ++    GA V F+        PG +  R  V +++
Sbjct: 2616 VIPFLVLAVGVDNIFILVQTHER-NPKRAQESIPDHIGRIMAKVGPSMLLTSTSECLCFLIGTLSSMPAVNTFSLYASLSIFINFLLQMTAFVSLMALDEQR-FENNLSDLFCCVKTNK---QDTTEDEDFGLVHAIFQRFYTPCLMKTPVRITVLVVFFVALVAHLVLVPNISIGLDQKLSMPEDSYVLKYFQFMEDLLSMGAPVYFVVT------PGLNYSRRNVQNVI 2835          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: UPI0006151F12 (protein still life, isoform SIF type 1 isoform X1 n=1 Tax=Megachile rotundata TaxID=143995 RepID=UPI0006151F12)

HSP 1 Score: 85.5 bits (210), Expect = 3.550e-15
Identity = 74/231 (32.03%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   19 LVAFIQVGVGADNLIIIVDFFQRSNPLH---SLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIGQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDE--HFGAMVSFMQVVLRDFHPGSSSQRSKVGDLV 696
            ++ F+ + VG DN+ I+V   +R NP     S+PD +   MA  G ++ LTS S  + F  G  S +P V +FS+ A+ S F+N+LLQ+T F  L+ALDE+R   N  + LFC  ++ K   Q+  E +  G        +    +   P  + V+V F V +V  LV +  I +GL+ +  +P+DSYV ++ +  ++    GA V F+        PG +  R  V +++
Sbjct: 2617 VIPFLVLAVGVDNIFILVQTHER-NPKRAQESIPDHIGRIMAKVGPSMLLTSTSECLCFLIGTLSSMPAVNTFSLYASLSIFINFLLQMTAFVSLMALDEQR-FENNLSDLFCCVKTNK---QDTTEDEDFGLVHAIFQRFYTPCLMKTPVRITVLVVFFVALVAHLVLVPNISIGLDQKLSMPEDSYVLKYFQFMEDLLSMGAPVYFVVT------PGLNYSRRNVQNVI 2836          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A6P8GW09_CLUHA (patched domain-containing protein 3 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8GW09_CLUHA)

HSP 1 Score: 85.1 bits (209), Expect = 4.010e-15
Identity = 62/221 (28.05%), Postives = 113/221 (51.13%), Query Frame = 1
Query:   28 FIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQER----------YEQKTAGEETRRVTGWI----GQGVTFRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHFGAMVSFMQVVLRD 648
            F+ +G+G DN+ I++  +QR+     + DRM+ET   A  ++++T+L+  +AF  G  +P   V SF +    +    Y+  +T F   LAL+ +R  +NRH   F   R  +  D+++          Y+  T  EE   ++ +     G  +T R   VFVI+ + V V + +    ++ VG++ E V  DDSY+  + + +D +F     F+ V+++D
Sbjct:  320 FLILGIGVDNMFIMIKCWQRTKVHDKVEDRMAETYKEAAVSITITTLTDALAFYIGLLTPFRSVQSFCMYTGTAILFCYIYNITFFGAFLALNGQRERSNRHWLTF---RKVEIPDKDKKSNACSVGGAYDPDTGAEEDTPISVFFKKHYGPFLTKRWTKVFVILLYFVYVCVSIYGCSQMKVGIDLENVAADDSYIVNYYDNEDHYFREYGPFVMVIVKD 537          
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Match: A0A2G9UUT4_TELCI (Patched family protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UUT4_TELCI)

HSP 1 Score: 84.3 bits (207), Expect = 6.510e-15
Identity = 63/203 (31.03%), Postives = 112/203 (55.17%), Query Frame = 1
Query:   43 VGADNLIIIVDFFQRSNPLH-SLPDRMSETMAHAGTAVSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLALDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIG---QGVTFRP-AAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQDEHFGAMVSFMQV 636
            VG DN+ I++  + RS+P H SL  RM ET A AG ++++TSL+  ++FA G ++P P V  F   A  +    Y+ Q+T F  ++    RR + NR+   F  R+ +K + +  YE ++  E+   ++ +       +   P   V +I+AFL+ + + +    E+ +GLEP ++LPD+SY  + L + +++F    S + V
Sbjct:   17 VGVDNVFILLSAW-RSSPTHQSLQKRMEETFADAGVSITVTSLTDFISFAVGCATPFPSVQMFCAYAVTAVMFTYVYQLTFFAGIMVYTNRREMDNRNCITF--RKIKKEESKSAYEDRSF-EKNHLLSQFFRTTYSDMLLNPFVRVLIIIAFLIYLGVAMWGCTEVKLGLEPNDLLPDNSYGKQTLRLAEKYFADYGSNLHV 215          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75818.17884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3W2M8_EMIHU2.610e-2133.96Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7D9L4U5_PARCT1.240e-1726.27Patched domain-containing 3-like (Fragment) n=1 Ta... [more]
A0A1Z5JYE4_FISSO1.470e-1629.32SSD domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A096P8T2_OSTTA1.220e-1529.38Sterol-sensing domain n=2 Tax=Ostreococcus tauri T... [more]
UPI001425BB541.220e-1529.26patched domain-containing protein 3-like isoform X... [more]
UPI0006150EE13.480e-1532.03protein still life, isoforms C/SIF type 2 isoform ... [more]
UPI000614EDB63.550e-1532.03protein still life, isoform SIF type 1 isoform X2 ... [more]
UPI0006151F123.550e-1532.03protein still life, isoform SIF type 1 isoform X1 ... [more]
A0A6P8GW09_CLUHA4.010e-1528.05patched domain-containing protein 3 n=1 Tax=Clupea... [more]
A0A2G9UUT4_TELCI6.510e-1531.03Patched family protein n=1 Tax=Teladorsagia circum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75818contigM-pyrifera_M_contig75818:1..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score92.0
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog6500.XP_005105945.1
Preferred namePTCHD3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sterol-sensing domain of SREBP cleavage-activation
EggNOG OGs39MRF@33154,3CPBC@33208,3E5G3@33213,KOG1933@1,KOG1933@2759
COG Functional cat.I
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size765
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.7177067-CDS-M-pyrifera_M_contig75818:0..4121622816656.7177067-CDS-M-pyrifera_M_contig75818:0..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75818 1..412 +
1692278102.1652653-CDS-M-pyrifera_M_contig75818:0..4121692278102.1652653-CDS-M-pyrifera_M_contig75818:0..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75818 1..412 +
1622816656.7294526-CDS-M-pyrifera_M_contig75818:544..8971622816656.7294526-CDS-M-pyrifera_M_contig75818:544..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75818 545..897 +
1692278102.1786397-CDS-M-pyrifera_M_contig75818:544..8971692278102.1786397-CDS-M-pyrifera_M_contig75818:544..897Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75818 545..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75818.17884.1prot_M-pyrifera_M_contig75818.17884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75818 1..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75818.17884.1

>prot_M-pyrifera_M_contig75818.17884.1 ID=prot_M-pyrifera_M_contig75818.17884.1|Name=mRNA_M-pyrifera_M_contig75818.17884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
FNSVNALVAFIQVGVGADNLIIIVDFFQRSNPLHSLPDRMSETMAHAGTA
VSLTSLSTVVAFAAGASSPLPGVASFSVLAAASFFLNYLLQVTLFPVLLA
LDERRRLANRHACLFCLRRSEKHKDQERYEQKTAGEETRRVTGWIGQGVT
FRPAAVFVIVAFLVLVVLGLVSLEEIPVGLEPEEVLPDDSYVSEWLEVQD
EHFGAMVSFMQVVLRDFHPGSSSQRSKVGDLVDLLEAHPKVFPPIVSWVA
ELEAY
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mRNA from alignment at M-pyrifera_M_contig75818:1..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75818.17884.1 ID=mRNA_M-pyrifera_M_contig75818.17884.1|Name=mRNA_M-pyrifera_M_contig75818.17884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=897bp|location=Sequence derived from alignment at M-pyrifera_M_contig75818:1..897+ (Macrocystis pyrifera P11B4 male)
TTCAACTCAGTCAATGCACTGGTTGCATTCATCCAAGTTGGGGTTGGAGC AGACAACCTCATTATCATTGTCGATTTCTTTCAACGATCCAACCCCCTAC ACTCCCTTCCAGATCGTATGAGTGAAACAATGGCACACGCAGGAACTGCA GTGTCTCTCACATCCCTCTCCACCGTTGTTGCATTTGCAGCAGGTGCATC TTCCCCTCTCCCAGGTGTTGCAAGTTTCTCCGTCCTTGCAGCTGCTTCCT TCTTCCTCAATTACCTTCTTCAAGTCACTCTTTTCCCAGTACTCCTTGCA CTTGATGAACGGCGTCGACTTGCGAACCGGCATGCTTGTCTTTTTTGTCT TCGACGAAGTGAAAAACACAAAGACCAAGAAAGGTACGAACAAAAGACTG CTGGAGAAGAGAGTGGAGCGGGAGCTGGAAAGGATGAAACCCTCTCAGCA GTGCCAACAGCATCTGCGAAATCAACCACTACGCTCACCTCCCGTTCGAC TTCCTCCACCAAAGAGTCCACCCCAACTTCCTCCATCCCATTAGCTCGCC GTGTGACTGGATGGATTGGACAAGGTGTTACGTTTCGTCCAGCAGCAGTG TTTGTGATTGTTGCGTTCTTGGTGTTGGTGGTGTTGGGATTAGTGTCTTT AGAAGAGATTCCTGTGGGGTTGGAGCCGGAAGAAGTGTTGCCAGATGATA GCTACGTATCAGAGTGGCTTGAAGTGCAAGATGAGCACTTTGGAGCGATG GTAAGTTTCATGCAAGTGGTATTGCGTGATTTCCATCCTGGCTCCTCGTC ACAGCGCAGCAAAGTTGGTGACTTGGTAGACTTGCTGGAAGCACACCCCA AGGTGTTTCCTCCAATCGTGTCTTGGGTTGCAGAGCTGGAGGCATAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75818:1..897+

>mRNA_M-pyrifera_M_contig75818.17884.1 ID=mRNA_M-pyrifera_M_contig75818.17884.1|Name=mRNA_M-pyrifera_M_contig75818.17884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig75818:1..897+ (Macrocystis pyrifera P11B4 male)
TTCAACTCAGTCAATGCACTGGTTGCATTCATCCAAGTTGGGGTTGGAGC
AGACAACCTCATTATCATTGTCGATTTCTTTCAACGATCCAACCCCCTAC
ACTCCCTTCCAGATCGTATGAGTGAAACAATGGCACACGCAGGAACTGCA
GTGTCTCTCACATCCCTCTCCACCGTTGTTGCATTTGCAGCAGGTGCATC
TTCCCCTCTCCCAGGTGTTGCAAGTTTCTCCGTCCTTGCAGCTGCTTCCT
TCTTCCTCAATTACCTTCTTCAAGTCACTCTTTTCCCAGTACTCCTTGCA
CTTGATGAACGGCGTCGACTTGCGAACCGGCATGCTTGTCTTTTTTGTCT
TCGACGAAGTGAAAAACACAAAGACCAAGAAAGGTACGAACAAAAGACTG
CTGGAGAAGAGATTCAACTCAGTCAATGCACTGGTTGCATTCATCCAAGT
TGGGGTTGGAGCAGACAACCTCATTATCATTGTCGATTTCTTTCAACGAT
CCAACCCCCTACACTCCCTTCCAGATCGTATGAGTGAAACAATGGCACAC
GCAGGAACTGCAGTGTCTCTCACATCCCTCTCCACCGTTGTTGCATTTGC
AGCAGGTGCATCTTCCCCTCTCCCAGGTGTTGCAAGTTTCTCCGTCCTTG
CAGCTGCTTCCTTCTTCCTCAATTACCTTCTTCAAGTCACTCTTTTCCCA
GTACTCCTTGCACTTGATGAACGGCGTCGACTTGCGAACCGGCATGCTTG
TCTTTTTTGTCTTCGACGAAGTGAAAAACACAAAGACCAAGAAAGGTACG
AACAAAAGACTGCTGGAGAAGAGACTCGCCGTGTGACTGGATGGATTGGA
CAAGGTGTTACGTTTCGTCCAGCAGCAGTGTTTGTGATTGTTGCGTTCTT
GGTGTTGGTGGTGTTGGGATTAGTGTCTTTAGAAGAGATTCCTGTGGGGT
TGGAGCCGGAAGAAGTGTTGCCAGATGATAGCTACGTATCAGAGTGGCTT
GAAGTGCAAGATGAGCACTTTGGAGCGATGGTAAGTTTCATGCAAGTGGT
ATTGCGTGATTTCCATCCTGGCTCCTCGTCACAGCGCAGCAAAGTTGGTG
ACTTGGTAGACTTGCTGGAAGCACACCCCAAGGTGTTTCCTCCAATCGTG
TCTTGGGTTGCAGAGCTGGAGGCATATCTCGCCGTGTGACTGGATGGATT
GGACAAGGTGTTACGTTTCGTCCAGCAGCAGTGTTTGTGATTGTTGCGTT
CTTGGTGTTGGTGGTGTTGGGATTAGTGTCTTTAGAAGAGATTCCTGTGG
GGTTGGAGCCGGAAGAAGTGTTGCCAGATGATAGCTACGTATCAGAGTGG
CTTGAAGTGCAAGATGAGCACTTTGGAGCGATGGTAAGTTTCATGCAAGT
GGTATTGCGTGATTTCCATCCTGGCTCCTCGTCACAGCGCAGCAAAGTTG
GTGACTTGGTAGACTTGCTGGAAGCACACCCCAAGGTGTTTCCTCCAATC
GTGTCTTGGGTTGCAGAGCTGGAGGCATAT
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