mRNA_M-pyrifera_M_contig7580.17880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7580.17880.1
Unique NamemRNA_M-pyrifera_M_contig7580.17880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7580.17880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7580contigM-pyrifera_M_contig7580:4127..5217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1091
Cds size801
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7580.17880.1prot_M-pyrifera_M_contig7580.17880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7580 4170..4970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.5312097-UTR-M-pyrifera_M_contig7580:4126..41691622816656.5312097-UTR-M-pyrifera_M_contig7580:4126..4169Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7580 4127..4169 +
1692278102.0705495-UTR-M-pyrifera_M_contig7580:4126..41691692278102.0705495-UTR-M-pyrifera_M_contig7580:4126..4169Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7580 4127..4169 +
1622816656.556988-UTR-M-pyrifera_M_contig7580:4970..52171622816656.556988-UTR-M-pyrifera_M_contig7580:4970..5217Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7580 4971..5217 +
1692278102.094166-UTR-M-pyrifera_M_contig7580:4970..52171692278102.094166-UTR-M-pyrifera_M_contig7580:4970..5217Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7580 4971..5217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.545208-CDS-M-pyrifera_M_contig7580:4169..49701622816656.545208-CDS-M-pyrifera_M_contig7580:4169..4970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 4170..4970 +
1692278102.0820947-CDS-M-pyrifera_M_contig7580:4169..49701692278102.0820947-CDS-M-pyrifera_M_contig7580:4169..4970Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 4170..4970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7580.17880.1

>prot_M-pyrifera_M_contig7580.17880.1 ID=prot_M-pyrifera_M_contig7580.17880.1|Name=mRNA_M-pyrifera_M_contig7580.17880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=267bp
MRDRVSGSGLKAADGDRGRSGSHADSRRRRVEDDNARRRHDVGRRIRPSD
AGGVSSSASGRDDRRSAARRRSRSRSGSRDRGGGGRKRETREREIREERS
IRGRNRDIKDRSSRERASRLDRNAPQSRGSGDNRRAGGRNERESVSERQS
RGSSPELRRPEVGGGRDRDRDSNSRGDRADGDRSRRRSSANEKRTSASSS
ALGGRERARETRGDRGSTGSGRRNENDVRDKGRESREKRNGGRRRSRRRE
REDSRERIGSKRSRRR*
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mRNA from alignment at M-pyrifera_M_contig7580:4127..5217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7580.17880.1 ID=mRNA_M-pyrifera_M_contig7580.17880.1|Name=mRNA_M-pyrifera_M_contig7580.17880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1091bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:4127..5217+ (Macrocystis pyrifera P11B4 male)
TCATGCAGAAGACTTGAAGAGGGGGAGGCAGGCGGATTCTGGCATGAGAG
ACAGGGTCAGCGGCAGCGGCCTCAAGGCTGCCGATGGGGACCGCGGCAGG
AGTGGGTCCCACGCCGACAGCCGCCGACGGAGGGTGGAAGATGACAACGC
CCGGCGTCGGCATGACGTAGGCCGGAGGATCAGACCGTCTGACGCCGGCG
GGGTCTCGTCTTCAGCTTCTGGACGCGACGATCGAAGAAGCGCGGCTCGC
CGCCGGAGCAGGAGCCGCAGCGGTAGCCGGGACCGAGGTGGTGGTGGCCG
CAAGCGTGAGACTCGCGAGCGCGAGATACGCGAGGAGCGCTCGATTCGCG
GTCGAAATCGAGACATCAAAGACCGATCGTCGCGGGAGCGAGCGTCAAGG
CTAGACAGGAACGCCCCCCAGAGTAGGGGAAGCGGGGACAACAGACGTGC
GGGTGGTAGAAATGAGAGGGAGAGCGTCAGCGAGAGACAATCCCGAGGTT
CCTCACCCGAGTTGCGGAGACCCGAAGTAGGGGGCGGTCGTGATAGGGAC
CGGGATAGCAACAGCCGTGGAGATAGAGCAGACGGCGATAGGAGCCGCCG
GAGGTCATCAGCGAACGAAAAACGGACTTCCGCATCTTCCAGCGCGCTTG
GCGGGCGAGAGAGAGCGCGTGAGACGAGAGGAGATCGAGGGTCGACCGGC
TCTGGCCGAAGGAACGAGAACGATGTCCGCGACAAGGGGCGGGAGTCGAG
GGAAAAGAGGAACGGCGGGCGGAGGAGGAGCAGGAGAAGAGAGAGGGAGG
ACAGTCGGGAAAGGATCGGAAGCAAGCGGTCGAGGAGGCGTTAGTGGGTG
GGCGGGCGGACGGGCAGGCGTTGTCTTGGCGTTGGTGTCGCCATAAGAAA
GAAGAACGCCTTTTAGCTTGCGCATGTTGCTCCAGTGAAACTGTGTTGAT
ATATACCGGTAGGATATTTGTATATTACTTGTGAAGGTTTCTCCAATGAA
AAAATAGAGGATTTCTACACGAAATGGACGCGCAGGCGTGCACACGCCCT
TATAAACTTGTTTCGCGGAGCTACTACGATAGTTGTACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7580:4127..5217+

>mRNA_M-pyrifera_M_contig7580.17880.1 ID=mRNA_M-pyrifera_M_contig7580.17880.1|Name=mRNA_M-pyrifera_M_contig7580.17880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1602bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:4127..5217+ (Macrocystis pyrifera P11B4 male)
ATGAGAGACAGGGTCAGCGGCAGCGGCCTCAAGGCTGCCGATGGGGACCG
CGGCAGGAGTGGGTCCCACGCCGACAGCCGCCGACGGAGGGTGGAAGATG
ACAACGCCCGGCGTCGGCATGACGTAGGCCGGAGGATCAGACCGTCTGAC
GCCGGCGGGGTCTCGTCTTCAGCTTCTGGACGCGACGATCGAAGAAGCGC
GGCTCGCCGCCGGAGCAGGAGCCGCAGCGGTAGCCGGGACCGAGGTGGTG
GTGGCCGCAAGCGTGAGACTCGCGAGCGCGAGATACGCGAGGAGCGCTCG
ATTCGCGGTCGAAATCGAGACATCAAAGACCGATCGTCGCGGGAGCGAGC
GTCAAGGCTAGACAGGAACGCCCCCCAGAGTAGGGGAAGCGGGGACAACA
GACGTGCGGGTGGTAGAAATGAGAGGGAGAGCGTCAGCGAGAGACAATCC
CGAGGTTCCTCACCCGAGTTGCGGAGACCCGAAGTAGGGGGCGGTCGTGA
TAGGGACCGGGATAGCAACAGCCGTGGAGATAGAGCAGACGGCGATAGGA
GCCGCCGGAGGTCATCAGCGAACGAAAAACGGACTTCCGCATCTTCCAGC
GCGCTTGGCGGGCGAGAGAGAGCGCGTGAGACGAGAGGAGATCGAGGGTC
GACCGGCTCTGGCCGAAGGAACGAGAACGATGTCCGCGACAAGGGGCGGG
AGTCGAGGGAAAAGAGGAACGGCGGGCGGAGGAGGAGCAGGAGAAGAGAG
AGGGAGGACAGTCGGGAAAGGATCGGAAGCAAGCGGTCGAGGAGGCGTTA
GATGAGAGACAGGGTCAGCGGCAGCGGCCTCAAGGCTGCCGATGGGGACC
GCGGCAGGAGTGGGTCCCACGCCGACAGCCGCCGACGGAGGGTGGAAGAT
GACAACGCCCGGCGTCGGCATGACGTAGGCCGGAGGATCAGACCGTCTGA
CGCCGGCGGGGTCTCGTCTTCAGCTTCTGGACGCGACGATCGAAGAAGCG
CGGCTCGCCGCCGGAGCAGGAGCCGCAGCGGTAGCCGGGACCGAGGTGGT
GGTGGCCGCAAGCGTGAGACTCGCGAGCGCGAGATACGCGAGGAGCGCTC
GATTCGCGGTCGAAATCGAGACATCAAAGACCGATCGTCGCGGGAGCGAG
CGTCAAGGCTAGACAGGAACGCCCCCCAGAGTAGGGGAAGCGGGGACAAC
AGACGTGCGGGTGGTAGAAATGAGAGGGAGAGCGTCAGCGAGAGACAATC
CCGAGGTTCCTCACCCGAGTTGCGGAGACCCGAAGTAGGGGGCGGTCGTG
ATAGGGACCGGGATAGCAACAGCCGTGGAGATAGAGCAGACGGCGATAGG
AGCCGCCGGAGGTCATCAGCGAACGAAAAACGGACTTCCGCATCTTCCAG
CGCGCTTGGCGGGCGAGAGAGAGCGCGTGAGACGAGAGGAGATCGAGGGT
CGACCGGCTCTGGCCGAAGGAACGAGAACGATGTCCGCGACAAGGGGCGG
GAGTCGAGGGAAAAGAGGAACGGCGGGCGGAGGAGGAGCAGGAGAAGAGA
GAGGGAGGACAGTCGGGAAAGGATCGGAAGCAAGCGGTCGAGGAGGCGTT
AG
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