mRNA_M-pyrifera_M_contig7580.17878.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7580.17878.1
Unique NamemRNA_M-pyrifera_M_contig7580.17878.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: D7FJ62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ62_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.050e-17
Identity = 55/97 (56.70%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  109 AKPGSVTAPRATGSASLGAGAGGGGHVGEVV-----APDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYKAMLALARGE 384
            A P   T P A G  SLG     GG VGE V      P E KR+VVEKMV +VA+NGQ FEDRVR+RE +  TFDFL P+NK++ YYK  LALA+GE
Sbjct:  387 AAPTGTTLPLAAG-VSLGE---AGGSVGEGVLLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVRKREVSNPTFDFLNPANKFHAYYKRQLALAKGE 479
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A6H5L7V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 9.770e-17
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:  172 GGGGHVGEVVA-----PDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYKAMLALARGE 384
            G GG VGE        P E KR+VVEKMV +VA+NGQ FEDRV++RE +  TFDFL P+NK++ YYK  LALA+GE
Sbjct:  425 GVGGSVGEAAVLSPAVPGEEKRQVVEKMVGYVAKNGQAFEDRVKKREASNPTFDFLNPANKFHAYYKRQLALAKGE 500
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: U4LIR6_PYROM (Similar to Pre-mRNA-splicing factor sap114 acc. no. O13900 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LIR6_PYROM)

HSP 1 Score: 58.2 bits (139), Expect = 5.350e-7
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:  199 VAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYY 354
            V P    R +VEK   +VARNGQ FE R+RE+EK    F FL  ++ YYPYY
Sbjct:   24 VLPPRDLRSIVEKTAGYVARNGQVFEQRIREKEKHNPKFSFLNSADPYYPYY 75
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A8H3L374_9GLOM (Splicing factor, suppressor of white-apricot homolog isoform X1 n=3 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L374_9GLOM)

HSP 1 Score: 57.8 bits (138), Expect = 6.980e-7
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  184 HVGEVVAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYK 357
            H G VV P    + +++KM A+VA+NGQ+ E +VRE+      F FL+P N+++PYYK
Sbjct:  346 HFGPVVVPPPDLKIIIDKMSAYVAKNGQSLEAKVREKHIDDPRFSFLLPWNEFHPYYK 403
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A1Y2DMZ0_9PEZI (Pre-mRNA splicing factor PRP21 like protein-domain-containing protein n=1 Tax=Pseudomassariella vexata TaxID=1141098 RepID=A0A1Y2DMZ0_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-6
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  196 VVAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYY 354
            VV P +  R ++EK   FVARNG TFEDR+REREK    F FL  ++ Y P+Y
Sbjct:   22 VVLPPKEFRTILEKTAGFVARNGITFEDRIREREKHNPKFSFLSNADPYNPFY 74
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A2V0PF07_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PF07_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 1.470e-6
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:  205 PDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYKAMLALARGE 384
            P E  R V++K+VAFVARNG  FE  VRERE A   F F+   ++++PYY+A L  A G+
Sbjct:  532 PPEDARAVIDKLVAFVARNGAGFEAMVREREIANPKFAFMHAGHEHHPYYRACLEGALGK 591
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: S8A267_DACHA (Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8A267_DACHA)

HSP 1 Score: 56.2 bits (134), Expect = 2.480e-6
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  196 VVAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYKAML---------ALARGETPASSVP 405
            VV P +  R +VEK   +VARNG+ FE R+R++E+    F FL P + Y P+Y   L         A+A G T AS+ P
Sbjct:   20 VVLPPKEIRAIVEKTAGYVARNGEAFEMRIRDKERTNPKFSFLTPGDPYNPFYVWRLEETRAGRSTAVAAGRTDASAAP 98
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A2I0RY51_9PEZI (Pre-mRNA-splicing factor sap114 n=5 Tax=Cercospora TaxID=29002 RepID=A0A2I0RY51_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 3.390e-6
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  199 VAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYK 357
            V P    RE +EK+ A+VAR+GQTFED VR++    +   FL P ++Y PYYK
Sbjct:   26 VLPPRGVREKIEKVAAYVARSGQTFEDSVRQKNAGTNITHFLEPEDEYNPYYK 78
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A3N4KSG9_9PEZI (Surp module n=3 Tax=Morchella TaxID=5193 RepID=A0A3N4KSG9_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 4.610e-6
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:  196 VVAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYY 354
            VV P +  R +VEK   +VARNGQ FE R+RE+EK    F FL  ++ YY +Y
Sbjct:   26 VVLPPKDLRAIVEKTAGYVARNGQVFEQRIREKEKHNPKFSFLNTADSYYQFY 78
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BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Match: A0A2N1NX76_9GLOM (Uncharacterized protein n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0A2N1NX76_9GLOM)

HSP 1 Score: 55.1 bits (131), Expect = 5.240e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  190 GEVVAPDEAKREVVEKMVAFVARNGQTFEDRVREREKAKSTFDFLVPSNKYYPYYK 357
            G VV P    + +++KM A+VA+NGQ+ E +VRE+      F FL+P N+++PYYK
Sbjct:  235 GPVVVPPPDLKVIIDKMSAYVAKNGQSLEAKVREKHIDDPRFSFLLPWNEFHPYYK 290
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7580.17878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ62_ECTSI2.050e-1756.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7V8_9PHAE9.770e-1759.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U4LIR6_PYROM5.350e-751.92Similar to Pre-mRNA-splicing factor sap114 acc. no... [more]
A0A8H3L374_9GLOM6.980e-744.83Splicing factor, suppressor of white-apricot homol... [more]
A0A1Y2DMZ0_9PEZI1.360e-652.83Pre-mRNA splicing factor PRP21 like protein-domain... [more]
A0A2V0PF07_9CHLO1.470e-650.00Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
S8A267_DACHA2.480e-640.51Uncharacterized protein n=1 Tax=Dactylellina hapto... [more]
A0A2I0RY51_9PEZI3.390e-649.06Pre-mRNA-splicing factor sap114 n=5 Tax=Cercospora... [more]
A0A3N4KSG9_9PEZI4.610e-649.06Surp module n=3 Tax=Morchella TaxID=5193 RepID=A0A... [more]
A0A2N1NX76_9GLOM5.240e-644.64Uncharacterized protein n=10 Tax=Rhizophagus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7580contigM-pyrifera_M_contig7580:1592..2893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue3.3e-16
Seed eggNOG ortholog2880.D7FJ62
Preferred nameSFSWAP
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000395,GO:0000398,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0033119,GO:0034622,GO:0034641,GO:0043170,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0045292,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048519,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903311,GO:1903312
EggNOG free text desc.mRNA 5'-splice site recognition
EggNOG OGsKOG1847@1,KOG1847@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size462
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.4457226-CDS-M-pyrifera_M_contig7580:1591..18841622816656.4457226-CDS-M-pyrifera_M_contig7580:1591..1884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 1592..1884 +
1692278102.0286732-CDS-M-pyrifera_M_contig7580:1591..18841692278102.0286732-CDS-M-pyrifera_M_contig7580:1591..1884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 1592..1884 +
1622816656.4606593-CDS-M-pyrifera_M_contig7580:2725..28911622816656.4606593-CDS-M-pyrifera_M_contig7580:2725..2891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 2726..2891 +
1692278102.0416408-CDS-M-pyrifera_M_contig7580:2725..28911692278102.0416408-CDS-M-pyrifera_M_contig7580:2725..2891Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7580 2726..2891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7580.17878.1prot_M-pyrifera_M_contig7580.17878.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7580 1592..2891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7580.17878.1

>prot_M-pyrifera_M_contig7580.17878.1 ID=prot_M-pyrifera_M_contig7580.17878.1|Name=mRNA_M-pyrifera_M_contig7580.17878.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
EDAPTRSTPSSAAITAAATATGASASSAAVRSGAAAAKPGSVTAPRATGS
ASLGAGAGGGGHVGEVVAPDEAKREVVEKMVAFVARNGQTFEDRVREREK
AKSTFDFLVPSNKYYPYYKAMLALARGETPASSVPSARAAATSASNSSTG
RHS
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mRNA from alignment at M-pyrifera_M_contig7580:1592..2893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7580.17878.1 ID=mRNA_M-pyrifera_M_contig7580.17878.1|Name=mRNA_M-pyrifera_M_contig7580.17878.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:1592..2893+ (Macrocystis pyrifera P11B4 male)
GAGGACGCGCCTACGCGTTCCACCCCCTCATCCGCCGCCATCACTGCTGC
CGCTACCGCCACTGGCGCGTCCGCTTCGTCTGCTGCCGTAAGAAGCGGCG
CTGCAGCGGCAAAACCGGGGTCTGTGACGGCTCCGCGTGCAACAGGTTCC
GCAAGTTTGGGAGCTGGCGCTGGAGGAGGAGGGCATGTGGGAGAAGTAGT
CGCGCCGGACGAGGCGAAGCGGGAAGTGGTGGAGAAGATGGTGGCCTTTG
TGGCGAGAAACGGTCAGACCTTTGAAGACCGTGTCAGGGAGAGGTGGGCC
TCAATGTGTTGTGGATGTGCTACTCGGTCTGGGCCGCGGGGGAGGGCGGG
CTGTCTTCCATGGTCGACTTCGTTGTTTTCACACCTCGGACAGACAGATC
GTGATCTATCTATCTGATCTATGTACACTAGATGATCTACTGTTGATCTA
CTGTAGTTCCTCACCCGCCGTTGTGACAGGTTGTGCACGATCTATCTGTG
CAGTACAGCTCCAACCCAGGAAACATGTCCTATTAATAGGTCGTGCAGGT
TAATATACGGCTCCCAACCGGCAACATGAGCTGCAGTAGATTGTACAAGA
TCGGCAACAGACCTGCCTTGGAGGATCTAGATCATTGGCTGTGCGAGGTG
TGTTTGTTTTGTATCGATTGTCCCCGTCTTGTCGGTCGGTTGGTAGTGGA
AGCGGTGTCGACTCGCTCTTTCGTTGCACCCAAGCGCTTGCCGCGATGTT
GTGCTTCGAGACGTCCTGTTCGATACTTCGTTGTGCGAATGCCGTCCACG
AGTGAGTTTGTCTTTTTGTGGCAAAATAGTGCATGCTCGGCACTCGTCTC
ATTGTTTCGGCTGGGCACTATTAGTAGGCATGAACTCTACGGTTGGGTTG
ACTCCCCACACACCTACGCAATACACCGAAAACCTCTTTTTACAATATAA
GAGCGATGCATTGGCTCAGCATCTCATAGTTGTTTCCCCCACCCGCGGTC
TGTTAGGGTATGCCCTATGAAACTGTCATGTAACACATCGGCAGAATCCG
CTTCTATGTTGCCGAACCCGCCCTCTCCCTTTTTTCCCTCCCGCCCGCCC
TTTCTCCCCCCCGTCCCCACACCCTTGATATCAGGGAAAAAGCCAAATCG
ACGTTCGACTTCTTGGTCCCGTCGAACAAATACTACCCTTACTACAAGGC
GATGCTGGCTCTGGCCAGGGGGGAGACGCCGGCGTCTTCTGTTCCGAGCG
CGCGGGCCGCCGCCACCAGCGCGAGCAACTCAAGCACCGGACGACACAGC
AC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7580:1592..2893+

>mRNA_M-pyrifera_M_contig7580.17878.1 ID=mRNA_M-pyrifera_M_contig7580.17878.1|Name=mRNA_M-pyrifera_M_contig7580.17878.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig7580:1592..2893+ (Macrocystis pyrifera P11B4 male)
GAGGACGCGCCTACGCGTTCCACCCCCTCATCCGCCGCCATCACTGCTGC
CGCTACCGCCACTGGCGCGTCCGCTTCGTCTGCTGCCGTAAGAAGCGGCG
CTGCAGCGGCAAAACCGGGGTCTGTGACGGCTCCGCGTGCAACAGGTTCC
GCAAGTTTGGGAGCTGGCGCTGGAGGAGGAGGGCATGTGGGAGAAGTAGT
CGCGCCGGACGAGGCGAAGCGGGAAGTGGTGGAGAAGATGGTGGCCTTTG
TGGCGAGAAACGGTCAGACCTTTGAAGACCGTGTCAGGGAGAGGAGGACG
CGCCTACGCGTTCCACCCCCTCATCCGCCGCCATCACTGCTGCCGCTACC
GCCACTGGCGCGTCCGCTTCGTCTGCTGCCGTAAGAAGCGGCGCTGCAGC
GGCAAAACCGGGGTCTGTGACGGCTCCGCGTGCAACAGGTTCCGCAAGTT
TGGGAGCTGGCGCTGGAGGAGGAGGGCATGTGGGAGAAGTAGTCGCGCCG
GACGAGGCGAAGCGGGAAGTGGTGGAGAAGATGGTGGCCTTTGTGGCGAG
AAACGGTCAGACCTTTGAAGACCGTGTCAGGGAGAGGGAAAAAGCCAAAT
CGACGTTCGACTTCTTGGTCCCGTCGAACAAATACTACCCTTACTACAAG
GCGATGCTGGCTCTGGCCAGGGGGGAGACGCCGGCGTCTTCTGTTCCGAG
CGCGCGGGCCGCCGCCACCAGCGCGAGCAACTCAAGCACCGGACGACACA
GCGGAAAAAGCCAAATCGACGTTCGACTTCTTGGTCCCGTCGAACAAATA
CTACCCTTACTACAAGGCGATGCTGGCTCTGGCCAGGGGGGAGACGCCGG
CGTCTTCTGTTCCGAGCGCGCGGGCCGCCGCCACCAGCGCGAGCAACTCA
AGCACCGGACGACACAGC
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