mRNA_M-pyrifera_M_contig75770.17871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75770.17871.1
Unique NamemRNA_M-pyrifera_M_contig75770.17871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A812UL81_9DINO (Trehalase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UL81_9DINO)

HSP 1 Score: 111 bits (278), Expect = 8.400e-26
Identity = 61/132 (46.21%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    7 GKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRY---HGKGK 393
            GKW QFSFLH+YHH SI   Y+VNA+  + G   + + AN  +H VMY YYL T  G +    + +T++QLLQFV+MMSQ + +  R    +  C FP  +   Y  YI SLF+LF  FF+RRY     KGK
Sbjct:  794 GKWAQFSFLHIYHHFSIFFVYWVNANVGYDGDIYYTIIANGFIHCVMYFYYLQTTFGAKPWWAKHLTSLQLLQFVTMMSQAVYMLTRP---NVGCGFPRNVITFYFFYILSLFLLFAQFFVRRYMQGDSKGK 922          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A2A9MEJ8_9APIC (Elongation of fatty acids protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MEJ8_9APIC)

HSP 1 Score: 104 bits (259), Expect = 4.700e-24
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 CSGKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLP--PQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHG--KGKKD 399
            C GKW QFSFLH+YHH SIL   ++NA   + G   + VFAN  +H +MY YYLM +L + V     Q +T +Q+ QF+ M+ QG       +    SC++P RIA  Y++YI S++VLF D F +R +G  KGK++
Sbjct:  197 CRGKWAQFSFLHIYHHASILYMMWINASVGYDGDIYFAVFANGSIHVMMYTYYLMASLNIGVARYIKQFITRMQMTQFLGMLGQGFYHMCFYK----SCEYPLRIAVGYMIYIVSMYVLF-DRFAKRTYGNKKGKEN 328          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A0F7U7Z5_NEOCL (Elongation of fatty acids protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=A0A0F7U7Z5_NEOCL)

HSP 1 Score: 100 bits (250), Expect = 1.020e-22
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    7 GKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRV---LPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAE 405
            GKW QFSFLH+YHH SIL   +VNA   + G   + V AN  +H VMY YYLM +L + V   + P  +T +Q+ QF+ M+ QG       QD    C++P RIA  Y+VYI S++VLF D F +R +G  K   E
Sbjct:  199 GKWAQFSFLHIYHHASILYMMWVNASVGYDGDIYFAVIANGSIHVVMYTYYLMASLNIGVARHIKP-FITRLQMTQFLGMLGQGFYHMCFYQD----CEYPIRIAVVYMVYIVSMYVLF-DRFAKRTYGHKKAGKE 328          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A7S0PF91_CAFRO (Elongation of fatty acids protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PF91_CAFRO)

HSP 1 Score: 99.0 bits (245), Expect = 3.610e-22
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 GKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAED 408
            GKW QF+FLHV+HH SI + Y+VN +  + G   + + AN  +H +MY YY +T LG R     ++T  Q+ QF++MM QG  +      ++  C FP  IA AY  YI  LFVLF  F    Y  K  +  +D
Sbjct:  191 GKWQQFTFLHVFHHFSIFSVYWVNIYTGYDGDIWFTIVANGTIHAIMYYYYTLTTLGARPWWKSLLTYAQMAQFIAMMVQGAYLY-----SNPDCGFPKPIAAAYFFYIMLLFVLFARFAAGAYCSKPSRKVKD 319          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: M4BSZ1_HYAAE (Elongation of fatty acids protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSZ1_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.860e-21
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 1
Query:   10 KWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAEDKK 414
            KW Q SFLHVYHH++I   YF+N   A+ G     +  N  +H +MY YY ++A    +   + +T +QL+QFV+M  QG ++  RS +     +FP ++   Y+VYI SLF LF++FF+R Y  K +K +  +K
Sbjct:  165 KWKQLSFLHVYHHLTIFAIYFMNFRVAYDGDIYATIILNGFIHTIMYMYYFVSAHTRDIWWKKYLTAMQLIQFVTMNVQGYLMVSRSCE-----NFPHKVPVIYLVYIQSLFWLFMNFFVRSYCSKPRKSSNKRK 294          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A9VDA7_MONBE (Elongation of fatty acids protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VDA7_MONBE)

HSP 1 Score: 96.3 bits (238), Expect = 2.820e-21
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 1
Query:   10 KWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPP--QIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAEDKKRK 420
            KW Q SFLHVYHH SI   Y++NA+ A+ G   + V  NS +HF+MY YY +T++G+RV     +++T  Q +QFV+M  Q  ++       S  C FP  +   Y+ YI SL  LF +F  + Y   GKKD + K++K
Sbjct:  170 KWTQLSFLHVYHHSSIFMIYWLNANVAYDGDIYYTVILNSFIHFIMYFYYGVTSIGLRVPTALKRLITHSQRIQFVAMNIQAAILL------SQGCAFPKNVTIMYLFYIISLLALFTNFDRKTY---GKKDGQKKQKK 299          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: S8F9W9_TOXGM (Elongation of fatty acids protein n=16 Tax=Toxoplasma gondii TaxID=5811 RepID=S8F9W9_TOXGM)

HSP 1 Score: 97.1 bits (240), Expect = 2.840e-21
Identity = 60/139 (43.17%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 CSGKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGV---RVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGK--GKKDA 402
            C GKW QFSFLH+YHH SIL   +VNA   + G   + V AN  +H VMY YYLM +L +   R + P  +T +Q+ QF+ M+ QG       QD    C +P RI   Y+ YI S++ LF  F  R Y  K  GK +A
Sbjct:  197 CRGKWAQFSFLHIYHHASILYMMWVNASVGYDGDIYFAVAANGAIHVVMYAYYLMASLNIGAARYIKP-FITRMQMTQFLGMLGQGFYHICFYQD----CQYPIRIGVVYLGYIVSMYALFDRFAKRTYGTKNAGKGNA 330          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A7S1TK56_9RHOD (Elongation of fatty acids protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TK56_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 6.950e-21
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    7 GKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFL-RRYHGKGKKDAEDKK 414
            G+W Q SFLHVYHH+SIL +++     A G    + +  NS +H +MYGYYL+ + G        +T +Q+LQF S + Q I V     D    CDFP  +AK  + Y+F+L  LFL+F +  +Y  + KK    KK
Sbjct:  140 GRWRQLSFLHVYHHVSILAYWYAILWMAPGSDAYFSLAINSYIHVIMYGYYLLASFGYSPWWKFYITRMQILQFCSFVGQSIYVGYIRND----CDFPPLLAKGLMWYMFTLIALFLNFLIVNQYSKRSKKSGAVKK 272          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: A0A024U227_9STRA (Elongation of fatty acids protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U227_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-20
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   10 KWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAEDKKR 417
            KW Q SFLHVYHH++I + Y++N  A + G     +  N  +H +MY YY ++A    +   + +TT+QL+QFV+M  Q +M   +    +     P  IA  Y+VYI SLF LF+ FF+  Y    +K+  DKKR
Sbjct:  145 KWKQLSFLHVYHHLTIFSIYWLNFRALYDGDIYLTIILNGFIHTIMYTYYFVSAHTKTIWWKKYLTTMQLIQFVTMNVQAVMTISKECKGT-----PQNIAIMYLVYIQSLFWLFMHFFITSYCSSPRKEGTDKKR 275          
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Match: F2UJU3_SALR5 (Elongation of fatty acids protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJU3_SALR5)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-20
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   10 KWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMYGYYLMTALGVRVLPPQI---VTTVQLLQFVSMMSQGIMVALRSQDASDSCDFPTRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKK 396
            KW+Q SFLHVYHH SIL  Y+VN +  + G   + V  NS +H +MY YY +TA+GV V P  I   +T  Q +QFV M++QG++        +  C FP R+   Y++YI S+  LF DF  + Y  K  K
Sbjct:  148 KWNQISFLHVYHHASILMVYWVNVNTGYDGDIYFTVVLNSFIHAIMYSYYGLTAVGVTV-PRNIKRLITHSQRIQFVLMIAQGVV------SLAIDCPFPHRVLYMYLIYIASMLFLFTDFDRKTYAKKDDK 272          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75770.17871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812UL81_9DINO8.400e-2646.21Trehalase n=1 Tax=Symbiodinium sp. KB8 TaxID=23098... [more]
A0A2A9MEJ8_9APIC4.700e-2443.80Elongation of fatty acids protein n=1 Tax=Besnoiti... [more]
A0A0F7U7Z5_NEOCL1.020e-2244.85Elongation of fatty acids protein n=2 Tax=Neospora... [more]
A0A7S0PF91_CAFRO3.610e-2240.30Elongation of fatty acids protein n=2 Tax=Cafeteri... [more]
M4BSZ1_HYAAE1.860e-2139.26Elongation of fatty acids protein n=1 Tax=Hyaloper... [more]
A9VDA7_MONBE2.820e-2141.01Elongation of fatty acids protein n=1 Tax=Monosiga... [more]
S8F9W9_TOXGM2.840e-2143.17Elongation of fatty acids protein n=16 Tax=Toxopla... [more]
A0A7S1TK56_9RHOD6.950e-2139.42Elongation of fatty acids protein n=1 Tax=Erythrol... [more]
A0A024U227_9STRA1.010e-2038.97Elongation of fatty acids protein n=1 Tax=Aphanomy... [more]
F2UJU3_SALR51.440e-2042.42Elongation of fatty acids protein n=1 Tax=Salpingo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75770contigM-pyrifera_M_contig75770:119..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue6.5e-19
Seed eggNOG ortholog4787.PITG_13178T0
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K10249
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GNS1/SUR4 family
EggNOG OGs3QC26@4776,KOG3071@1,KOG3071@2759
EC2.3.1.199
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.9305813-CDS-M-pyrifera_M_contig75770:118..5411622816655.9305813-CDS-M-pyrifera_M_contig75770:118..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75770 119..541 +
1692278101.69554-CDS-M-pyrifera_M_contig75770:118..5411692278101.69554-CDS-M-pyrifera_M_contig75770:118..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75770 119..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75770.17871.1prot_M-pyrifera_M_contig75770.17871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75770 119..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75770.17871.1

>prot_M-pyrifera_M_contig75770.17871.1 ID=prot_M-pyrifera_M_contig75770.17871.1|Name=mRNA_M-pyrifera_M_contig75770.17871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
CSGKWDQFSFLHVYHHISILTFYFVNAHAAWGGPQVWPVFANSLVHFVMY
GYYLMTALGVRVLPPQIVTTVQLLQFVSMMSQGIMVALRSQDASDSCDFP
TRIAKAYVVYIFSLFVLFLDFFLRRYHGKGKKDAEDKKRK*
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mRNA from alignment at M-pyrifera_M_contig75770:119..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75770.17871.1 ID=mRNA_M-pyrifera_M_contig75770.17871.1|Name=mRNA_M-pyrifera_M_contig75770.17871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig75770:119..541+ (Macrocystis pyrifera P11B4 male)
TGCAGTGGCAAGTGGGATCAATTCTCATTTTTGCATGTGTACCACCACAT TTCGATCTTGACCTTTTATTTCGTGAACGCGCATGCGGCGTGGGGTGGTC CTCAAGTGTGGCCTGTGTTCGCAAACTCGTTGGTGCACTTTGTGATGTAC GGTTACTACTTGATGACCGCGTTGGGAGTGCGTGTGTTGCCTCCACAAAT TGTGACAACTGTGCAATTGCTCCAGTTCGTTTCTATGATGTCTCAGGGCA TCATGGTTGCGCTCCGATCTCAAGATGCTTCCGATTCATGTGATTTCCCA ACTAGGATCGCAAAAGCATACGTCGTCTACATCTTTTCTCTCTTCGTTCT CTTCCTCGACTTTTTCCTCAGGCGTTACCATGGAAAAGGAAAGAAAGATG CTGAAGACAAGAAGCGCAAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75770:119..541+

>mRNA_M-pyrifera_M_contig75770.17871.1 ID=mRNA_M-pyrifera_M_contig75770.17871.1|Name=mRNA_M-pyrifera_M_contig75770.17871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig75770:119..541+ (Macrocystis pyrifera P11B4 male)
TGCAGTGGCAAGTGGGATCAATTCTCATTTTTGCATGTGTACCACCACAT
TTCGATCTTGACCTTTTATTTCGTGAACGCGCATGCGGCGTGGGGTGGTC
CTCAAGTGTGGCCTGTGTTCGCAAACTCGTTGGTGCACTTTGTGATGTAC
GGTTACTACTTGATGACCGCGTTGGGAGTGCGTGTGTTGCCTCCACAAAT
TGTGACAACTGTGCAATTGCTCCAGTTCGTTTCTATGATGTCTCAGGGCA
TCATGGTTGCGCTCCGATCTCAAGATGCTTCCGATTCATGTGATTTCCCA
ACTAGGATCGCAAAAGCATACGTCGTCTACATCTTTTCTCTCTTCGTTCT
CTTCCTCGACTTTTTCCTCAGGCGTTACCATGGAAAAGGAAAGAAAGATG
CTGAAGACAAGAAGCGCAAATAGTGCAGTGGCAAGTGGGATCAATTCTCA
TTTTTGCATGTGTACCACCACATTTCGATCTTGACCTTTTATTTCGTGAA
CGCGCATGCGGCGTGGGGTGGTCCTCAAGTGTGGCCTGTGTTCGCAAACT
CGTTGGTGCACTTTGTGATGTACGGTTACTACTTGATGACCGCGTTGGGA
GTGCGTGTGTTGCCTCCACAAATTGTGACAACTGTGCAATTGCTCCAGTT
CGTTTCTATGATGTCTCAGGGCATCATGGTTGCGCTCCGATCTCAAGATG
CTTCCGATTCATGTGATTTCCCAACTAGGATCGCAAAAGCATACGTCGTC
TACATCTTTTCTCTCTTCGTTCTCTTCCTCGACTTTTTCCTCAGGCGTTA
CCATGGAAAAGGAAAGAAAGATGCTGAAGACAAGAAGCGCAAATAG
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