mRNA_M-pyrifera_M_contig7573.17865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7573.17865.1
Unique NamemRNA_M-pyrifera_M_contig7573.17865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7573.17865.1 vs. uniprot
Match: D7FJ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ96_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 5.910e-28
Identity = 85/183 (46.45%), Postives = 102/183 (55.74%), Query Frame = 1 
Query:    1 MACTRSALLERRSDLPLCSLRQVRQLCAGN------RAVFS-STGLDNAARDTRSLLQTPLKVAS---LPRRDQIAIGKAIVGRLGKDDNWVTDSTAGWTFAAATREIPEDFYARHGLCVKFDIFSRHNTTVCPQSALLCRSKCWYLLRALQAQADAISGLIGARDLALLDARYRLATSESRA 519
            +A TRS +LERR DLPL  LR VR L AG       R + S STG     RDT SLLQTP K  S   +PRRD+IAIGKAIV R  +DD+WVT  TA  +FAAAT+E P +                              +KC+      +AQA A SGLIG R+LALL++ YRLA +E RA
Sbjct:    2 VASTRSIVLERRPDLPLYGLRTVRHLRAGKSNDHDIRLLLSTSTGRHQKTRDTESLLQTPTKCCSSQGMPRRDRIAIGKAIVNRPRRDDHWVTTDTAPLSFAAATKEFPAN------------------------------NKCF------KAQAKAESGLIGNRELALLESYYRLAAAECRA 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7573.17865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ96_ECTSI5.910e-2846.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7573contigM-pyrifera_M_contig7573:8573..12419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size519
Cds size519
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7573.17865.1prot_M-pyrifera_M_contig7573.17865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7573 8573..12419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.6668434-CDS-M-pyrifera_M_contig7573:8572..87901622816655.6668434-CDS-M-pyrifera_M_contig7573:8572..8790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 8573..8790 -
1692278101.5672543-CDS-M-pyrifera_M_contig7573:8572..87901692278101.5672543-CDS-M-pyrifera_M_contig7573:8572..8790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 8573..8790 -
1622816655.6785276-CDS-M-pyrifera_M_contig7573:10468..106041622816655.6785276-CDS-M-pyrifera_M_contig7573:10468..10604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 10469..10604 -
1692278101.5783417-CDS-M-pyrifera_M_contig7573:10468..106041692278101.5783417-CDS-M-pyrifera_M_contig7573:10468..10604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 10469..10604 -
1622816655.6937914-CDS-M-pyrifera_M_contig7573:12254..124191622816655.6937914-CDS-M-pyrifera_M_contig7573:12254..12419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 12255..12419 -
1692278101.5906935-CDS-M-pyrifera_M_contig7573:12254..124191692278101.5906935-CDS-M-pyrifera_M_contig7573:12254..12419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7573 12255..12419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7573.17865.1

>prot_M-pyrifera_M_contig7573.17865.1 ID=prot_M-pyrifera_M_contig7573.17865.1|Name=mRNA_M-pyrifera_M_contig7573.17865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
MACTRSALLERRSDLPLCSLRQVRQLCAGNRAVFSSTGLDNAARDTRSLL
QTPLKVASLPRRDQIAIGKAIVGRLGKDDNWVTDSTAGWTFAAATREIPE
DFYARHGLCVKFDIFSRHNTTVCPQSALLCRSKCWYLLRALQAQADAISG
LIGARDLALLDARYRLATSESRA
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mRNA from alignment at M-pyrifera_M_contig7573:8573..12419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7573.17865.1 ID=mRNA_M-pyrifera_M_contig7573.17865.1|Name=mRNA_M-pyrifera_M_contig7573.17865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3847bp|location=Sequence derived from alignment at M-pyrifera_M_contig7573:8573..12419- (Macrocystis pyrifera P11B4 male)
ATGGCGTGTACGCGAAGTGCGCTGCTGGAACGAAGGTCCGACCTGCCGCT
GTGTAGCCTGAGGCAAGTGCGCCAACTCTGTGCTGGTAACAGGGCAGTGT
TTTCTTCGACGGGTCTCGACAATGCTGCGCGAGACACGCGCTCCTTGCTC
CAGACACCACTCAAGGTCGGTACCTGTACCCGTAGCTTGCAGCAACCGGA
CGCTAACGGGACGAAAAAAACGTCGTCGGTTCCGACACATCGCGGGGGGA
GCCCATTCTACCGTAAGGGCTGGCAGCTAGAGCGGCCGGGTTGTTGCTGA
CCACCGTGCGCTATGTGCTGTCCTGTATCATATGTATGCTGCTGTGTGTG
GTTCTGTTCACGACAACGCTGTCTTTTCGTCTTCTCTTGATGTCGATAAG
TGGACTTCCTTCCGTCATACGGTGTCCCAAAGCCCAGCGTTCCGCCGCAT
CTTCACTCTACATCGCTTGCGGGTAGATGTGATTCTCGCTAAGGGCACCA
ACCCGGCATGCGGTGTGCTTTGGTTCAGGCTAGCGGTATGGGCCCAGCAC
ACCGCCAACCCACTTTCAGCTACGTTCTGTTTTACTTGACTGGAAGTTTA
CTCTGTGCGCGTCCGTGTAATAGCTTGGGTGAGACTACCGGAATTTATAG
GTGCATCACACAGCATCAGCACTCGTGTATCTATTATTATGCCCCTCTCC
GTCTCCGCTCGCGACAAAAAAAACTTGGAAACAAGGTATGAACGATCCTT
CTCGTTGAGCATCACAAATTCGCCAACGATTACTTAAACAATAAATACTC
CAACGTACGAAGGCGTATCTAAAGTATTCCGCAAACACTACCTACTTGCC
TGCCTGCCTGCCTGCCTGCTAGCCACTCTCCTCCGGATACCGAATACTCA
ACGTTCTGTAAGCATGTGTATTATTAATATTAATAACTGTAGAATGGTGA
CCACACACACTGCACGCTCGCTCGTGCTCAAAATATATTCAATAAACGTA
TTTCTGTGGGGAGGACCCCGGATTCGACTCGATGTTTTTTGCACTTTCCC
TTTCTTAGAGGGTAGCGTTTAGGGCACACCAAGTTTTGGTATAGGATCGT
GCGGATGATTCCACGAACGACCATCAACGATGGTGGAGAGGAAAGATTGT
TTGTGCGAGGCACGGGTCTCGCATTCCTATTTGTAGTGCGTACTTGTCAC
GGCACGTTACTATACTGACGACAATAATCCAGGAATATGGGTGACCACAA
TCGTAAAGTAAGATGCGGATATCCACGACCTCGGCGAACGATAGACCTTC
GCGGGACAAAATCCATTCGACGGTTTGGTCGAGAACCTGGAACCCACATC
GCCCCCCAATGTTTGAACGCGTAATACTGGAGAACCCAGTACCGATTTTG
AACATTTAATTAGGAAGGGCGACAAGTTTCGGGATTTTTACCATTCAAAC
GCATTGTACATCAGTATACCAGGTATGACGTGCAGGCTTCGCACTTACTC
ATCTAGCCATGTCAACCCCTGCACAGTGAAAAACAGGGGCTGGTATGATG
ATTTGATTCACTATCTTGTGTCAGTCACACACTACAAAGTGTCAACAACT
AGTGGAATGTATTATTGTCCTTTGCAAGCACGCTTGCATGTTTCAGGATT
ATCATACACAGCGAAAACGAAAAAAGTTATGACGATGGTATTCGAAACCA
CGTATCACGAGAACCTGGAACCCGCATTTCACAATTTCACTACTGTATTT
CAGTATTTCACAACAACAATGAGTAAGAAACATCCACTACAATACCCCCG
CATCACATAAATAAGGTGGCAAGCCTACCCCGGCGTGACCAAATCGCGAT
CGGGAAGGCGATCGTGGGTCGCTTGGGTAAGGACGACAACTGGGTGACGG
ATAGCACTGCAGGGTGGACGTTTGCCGCTGCCACAAGAGAAATCCCGGAG
GGTTGCCGCTGGCCCGTGAGTGTGGAGAAACTGCGCCAGGTGAGTACGTA
CTGTACGGCGAAATATCGTAGCAGTGCGTACTATACGGTGATCGCCGTAT
GGTGCGACTTTTTGTGTCAGTCAGTACTGCTGCGCGGAATCCTTTACATG
GAGCACCACCACCGTACGTCGCCTGATCGGTTTATCTCTCAGCGAGAATT
GAAATGAAATGAAACCTTGAAGGTTTTGTTTGGCTATGTATTTTGACTAT
AGTGGCTATACGCACGAGTGTACTGCAGCATTTTACGAGTGAGAAATTCG
TGGATAGCAGGTAACTGATACCCCACAGGACGCCCGTTAATAGAATGAAA
CACGAATGCTGGCTCGGGGTGGGTTTCTTGTTCGGGCAAGGATGTGTTCT
ATGCTAAAATCAGTTTAGTCGCGCGGCTCCCGAATATCATATTTTCCAGT
AAATTTCAGCCTGCCTTTCTTAGGGCTGGTTTCGTTAGTGTCACGGGGTA
GAATAGTAATAAGAACCGAGCATAACTTGTAAACATAGGGGATATTACGA
TATTTAGGTGCATCGTGGGTTCTGATTACTTTGCCCTCCCGTACTGTAAT
AGGTGTCCTGTACGTTTGATTTACGACACGAAGATCAAACGGTACTTATA
ATGTGCGTATAACCATGGACTGCAAAGGGCTGGGCTAGGTGAAGGGCGTG
CAAGTGCAAGAAAACGTCGTAGCTCGCGACAAGATCCAGAACGGTGGTAT
GATAAACGTCCACGCCACGTGTGGGATCGGGGGTTACGTTTGGACCGTCA
GCGTCAAGGTATCGCAGCGAACCCGAGAAAATGCAGGGTAGTTCAACACT
GACTGGGACCGAGGAGTACCGGGTATGTTCGACACCTAAGCCACGGGGAC
TAGATTAAGAAGCAACACGCGACCAAATAACTAGCAAAACTGCGCTGCCC
TGCAGGGAAATGGGGTTCACGGAACAGTGGCGTTATGGGGTCATTCCTTC
CCCCAATGCCTCCTCGCCTTGGTTCTTCGTCCGCTGCCCCAGAGCTGCAT
GGGTGTGACGTCTTGACATTTGTCCGACCAACCAAATACGTGGCCCAATC
CTCTTCTCTCTTCTTGCGATTACGAGTGTTTTGCTGGTGCAAGGCTTTAA
GTCACCCACCCGTGTTGTCTTTTGCTGCCTATGTTTTATTTTTTATTTTT
CCAAAGGTCAGCAGGAGAGTACACCGAGGAGGCCGGGGAGCTCGGCAAGG
GAGATCCGCCGCTGACAGGCGGAAATACTCCCAGCAGGTGATGTTTATCG
TACCAATAGCAATGAAATGTTGCGCGATAAAAAGCAAGTCAAAGGCGAGT
ACTGTACCGGGGGGGGAGGGCAGGTACTTATGACCACGGCTTGTCCAGGA
GTTCGCTGAGCGTAAAAATCCCGTGAGTTGAGCTGGAGAGCAAAAGCGAC
CAATATAACAACAACGACAACAACAACAAAAGCGCTTGTTTTTCGGGCAG
CGGTTGCAATGTTGCACTTCCGTTTGATCTTATCAATGCCACGGGAAAGC
ATCGGATAGCTTCCCGCTGAAACTGTTGACGTGAACACTTGATGAAAATG
ACCGACCGTTGTCTGAAAGTGACTGCGGATGAGGGTAGTAAGGGTCACGG
ATGTGAGCTGGGTTCTAGTTGCTCTACAGACTTTTACGCAAGACATGGCC
TTTGCGTCAAATTTGACATTTTCTCTCGCCATAATACCACTGTCTGCCCT
CAATCAGCCCTCCTTTGCCGTTCGAAATGCTGGTATCTCCTCCGGGCATT
GCAGGCGCAAGCCGACGCTATTTCAGGATTAATTGGGGCTCGCGATTTGG
CGTTGCTGGATGCACGCTACCGTCTAGCCACCTCGGAGTCCCGAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7573:8573..12419-

>mRNA_M-pyrifera_M_contig7573.17865.1 ID=mRNA_M-pyrifera_M_contig7573.17865.1|Name=mRNA_M-pyrifera_M_contig7573.17865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig7573:8573..12419- (Macrocystis pyrifera P11B4 male)
ATGGCGTGTACGCGAAGTGCGCTGCTGGAACGAAGGTCCGACCTGCCGCT
GTGTAGCCTGAGGCAAGTGCGCCAACTCTGTGCTGGTAACAGGGCAGTGT
TTTCTTCGACGGGTCTCGACAATGCTGCGCGAGACACGCGCTCCTTGCTC
CAGACACCACTCAAGATGGCGTGTACGCGAAGTGCGCTGCTGGAACGAAG
GTCCGACCTGCCGCTGTGTAGCCTGAGGCAAGTGCGCCAACTCTGTGCTG
GTAACAGGGCAGTGTTTTCTTCGACGGGTCTCGACAATGCTGCGCGAGAC
ACGCGCTCCTTGCTCCAGACACCACTCAAGGTGGCAAGCCTACCCCGGCG
TGACCAAATCGCGATCGGGAAGGCGATCGTGGGTCGCTTGGGTAAGGACG
ACAACTGGGTGACGGATAGCACTGCAGGGTGGACGTTTGCCGCTGCCACA
AGAGAAATCCCGGAGGGTGGCAAGCCTACCCCGGCGTGACCAAATCGCGA
TCGGGAAGGCGATCGTGGGTCGCTTGGGTAAGGACGACAACTGGGTGACG
GATAGCACTGCAGGGTGGACGTTTGCCGCTGCCACAAGAGAAATCCCGGA
GGACTTTTACGCAAGACATGGCCTTTGCGTCAAATTTGACATTTTCTCTC
GCCATAATACCACTGTCTGCCCTCAATCAGCCCTCCTTTGCCGTTCGAAA
TGCTGGTATCTCCTCCGGGCATTGCAGGCGCAAGCCGACGCTATTTCAGG
ATTAATTGGGGCTCGCGATTTGGCGTTGCTGGATGCACGCTACCGTCTAG
CCACCTCGGAGTCCCGAGCAACTTTTACGCAAGACATGGCCTTTGCGTCA
AATTTGACATTTTCTCTCGCCATAATACCACTGTCTGCCCTCAATCAGCC
CTCCTTTGCCGTTCGAAATGCTGGTATCTCCTCCGGGCATTGCAGGCGCA
AGCCGACGCTATTTCAGGATTAATTGGGGCTCGCGATTTGGCGTTGCTGG
ATGCACGCTACCGTCTAGCCACCTCGGAGTCCCGAGCA
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