mRNA_M-pyrifera_M_contig75722.17862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75722.17862.1
Unique NamemRNA_M-pyrifera_M_contig75722.17862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 7.680e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 GTSTGSILITDYHGNESRRLRPHTMAVTDLSLDIRGDFLA 120
            G ++G IL+TDYHGNE+RRLRPHT AVTDLS+DI GDFLA
Sbjct:   65 GMASGMILLTDYHGNEARRLRPHTKAVTDLSMDITGDFLA 104
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BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Match: A0A5E4MAS1_9HEMI (Armadillo-type fold,Protein kinase, ATP binding site,WD40-repeat-containing domain,Protein kinase n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MAS1_9HEMI)

HSP 1 Score: 48.1 bits (113), Expect = 3.110e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 GTSTGSILITDYHGN--ESRRLRPHTMAVTDLSLDIRGDFLA 120
            GT+ GSI + D+ GN   +R+LRPHT+AV  +S+D RG+F+A
Sbjct:   52 GTNWGSIHLLDFEGNIVNNRQLRPHTVAVNQISIDSRGEFIA 93
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BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Match: A0A6G0U4F6_APHGL (Uncharacterized protein n=10 Tax=Aphididae TaxID=27482 RepID=A0A6G0U4F6_APHGL)

HSP 1 Score: 48.1 bits (113), Expect = 3.120e-5
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 GTSTGSILITDYHGN--ESRRLRPHTMAVTDLSLDIRGDFLA 120
            GT+ GSI + D+ GN   +R+LRPHT+AV  +S+D RG+F+A
Sbjct:  111 GTNWGSIHLLDFEGNIVNNRQLRPHTVAVNQISIDSRGEFIA 152
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BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Match: A0A7S4F0N8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F0N8_CHRCT)

HSP 1 Score: 47.0 bits (110), Expect = 6.830e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 GTSTGSILITDYHGNESRRLRPHTMAVTDLSLDIRGDFL 117
            GT+ G++ I D HGNE RRL+PH+ A++ L +D  G+F+
Sbjct:   40 GTTAGAVHILDLHGNELRRLQPHSAAISALCVDTSGEFV 78
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BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 7.980e-5
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   25 ITDYHGNESRRLRPHTMAVTDLSLDIRGDFLA 120
            +TD+HGN SRRLRPH  A+ D+S+D  G+F+A
Sbjct:   35 LTDFHGNLSRRLRPHRGAIHDISIDASGEFVA 66
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75722.17862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FS06_ECTSI7.680e-1377.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5E4MAS1_9HEMI3.110e-552.38Armadillo-type fold,Protein kinase, ATP binding si... [more]
A0A6G0U4F6_APHGL3.120e-552.38Uncharacterized protein n=10 Tax=Aphididae TaxID=2... [more]
A0A7S4F0N8_CHRCT6.830e-548.72Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A836CBT2_9STRA7.980e-559.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75722contigM-pyrifera_M_contig75722:172..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog2880.D7FS06
Preferred nameVPS41
KEGG koko:K20184
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2066@1,KOG2066@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.569044-CDS-M-pyrifera_M_contig75722:171..2911622816655.569044-CDS-M-pyrifera_M_contig75722:171..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75722 172..291 -
1692278101.528219-CDS-M-pyrifera_M_contig75722:171..2911692278101.528219-CDS-M-pyrifera_M_contig75722:171..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75722 172..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75722.17862.1prot_M-pyrifera_M_contig75722.17862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75722 172..291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75722.17862.1

>prot_M-pyrifera_M_contig75722.17862.1 ID=prot_M-pyrifera_M_contig75722.17862.1|Name=mRNA_M-pyrifera_M_contig75722.17862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
GTSTGSILITDYHGNESRRLRPHTMAVTDLSLDIRGDFLA
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mRNA from alignment at M-pyrifera_M_contig75722:172..291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75722.17862.1 ID=mRNA_M-pyrifera_M_contig75722.17862.1|Name=mRNA_M-pyrifera_M_contig75722.17862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig75722:172..291- (Macrocystis pyrifera P11B4 male)
GGAACTTCAACCGGATCGATCCTGATAACAGACTACCACGGAAACGAAAG
TCGACGCCTTCGGCCGCACACGATGGCTGTCACCGACCTCAGCCTGGACA
TCAGGGGTGACTTCTTAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75722:172..291-

>mRNA_M-pyrifera_M_contig75722.17862.1 ID=mRNA_M-pyrifera_M_contig75722.17862.1|Name=mRNA_M-pyrifera_M_contig75722.17862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig75722:172..291- (Macrocystis pyrifera P11B4 male)
GGAACTTCAACCGGATCGATCCTGATAACAGACTACCACGGAAACGAAAG
TCGACGCCTTCGGCCGCACACGATGGCTGTCACCGACCTCAGCCTGGACA
TCAGGGGTGACTTCTTAGCGGGAACTTCAACCGGATCGATCCTGATAACA
GACTACCACGGAAACGAAAGTCGACGCCTTCGGCCGCACACGATGGCTGT
CACCGACCTCAGCCTGGACATCAGGGGTGACTTCTTAGCG
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