mRNA_M-pyrifera_M_contig75708.17859.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig75708.17859.1
Unique Name	mRNA_M-pyrifera_M_contig75708.17859.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A265DU64_9GAMM (Transcription-repair-coupling factor n=41 Tax=root TaxID=1 RepID=A0A265DU64_9GAMM)

HSP 1 Score: 655 bits (1691), Expect = 1.790e-225
Identity = 340/348 (97.70%), Postives = 343/348 (98.56%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYE+PG+EY+RFAGNFPFEET DQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQS RQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKE TQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHD SIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARV VAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA
Sbjct:  556 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYEAPGDEYLRFAGNFPFEETPDQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSSRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEVTQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDASIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVGVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 903

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: F7SP50_9GAMM (Transcription-repair-coupling factor n=91 Tax=Halomonadaceae TaxID=28256 RepID=F7SP50_9GAMM)

HSP 1 Score: 627 bits (1617), Expect = 2.320e-214
Identity = 319/348 (91.67%), Postives = 338/348 (97.13%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGS+QWEKARRKAAEKIRDTAAELLD+YARREAQ+G +Y++PG+EYVRF  +FPFEET DQ AAIEAVISDM SPQPMDRVVCGDVGFGKTEVAMRAAFLAVQ+GRQVVVLVPTTLLARQHFENFRDRFADTAVNI LISRFTSGKE TQTLESIK+GQTDIVIGTHKLL+KSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAE+DILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ D+S+IKEALLREILRGGQVY LHNEVKTIEN+AE+IREL+PEARVAVAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVPSANTI+IERA
Sbjct:  556 PLHKLGSEQWEKARRKAAEKIRDTAAELLDIYARREAQEGFIYDTPGDEYVRFTASFPFEETPDQQAAIEAVISDMISPQPMDRVVCGDVGFGKTEVAMRAAFLAVQTGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTSGKEMTQTLESIKNGQTDIVIGTHKLLSKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRDSSVIKEALLREILRGGQVYFLHNEVKTIENAAEQIRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERA 903

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A0P8CKR9_9GAMM (Transcription-repair-coupling factor n=12 Tax=Halomonas TaxID=2745 RepID=A0A0P8CKR9_9GAMM)

HSP 1 Score: 627 bits (1617), Expect = 2.450e-214
Identity = 320/348 (91.95%), Postives = 335/348 (96.26%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGSDQWEKAR+KAAEKIRDTAAELLD+YARREAQ+GVVYE+P ++Y RFAGNFPFEET DQ AAIEAVI+DMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFT GKE ++TLE IK+GQTDIVIGTHKLLA SVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQH   +IKEALLREILRGGQVY LHNEVKTIEN+AE+IR L+PEARVAVAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA
Sbjct:  558 PLHKLGSDQWEKARKKAAEKIRDTAAELLDIYARREAQEGVVYEAPSDDYARFAGNFPFEETPDQQAAIEAVINDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTHGKEMSKTLEDIKNGQTDIVIGTHKLLANSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHQDGVIKEALLREILRGGQVYFLHNEVKTIENAAERIRSLVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 905

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A368U133_9GAMM (Transcription-repair-coupling factor n=4 Tax=Halomonas TaxID=2745 RepID=A0A368U133_9GAMM)

HSP 1 Score: 619 bits (1597), Expect = 2.330e-211
Identity = 315/348 (90.52%), Postives = 335/348 (96.26%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLH+LGS+QWEKAR+KAAEKIRDTAAELLDVYARREAQQGVVYE+PGEEYVRFA +FPFEET DQHAAIEAVI DMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVN+ LISRFT GK+  + LE IK+GQTDIVIGTHKLL+KSVELPKMGLLIIDEEHRFGV QKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ D ++IKEALLRE+LRGGQVY LHNEVKTIEN+AEKIR+L+P+ARVAVAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVP+ANTI+IERA
Sbjct:  556 PLHRLGSEQWEKARKKAAEKIRDTAAELLDVYARREAQQGVVYEAPGEEYVRFATSFPFEETPDQHAAIEAVIQDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNLELISRFTGGKDMNKALERIKNGQTDIVIGTHKLLSKSVELPKMGLLIIDEEHRFGVTQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRDDAVIKEALLRELLRGGQVYFLHNEVKTIENAAEKIRDLVPDARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPTANTILIERA 903

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A7Z0RVW7_9GAMM (Transcription-repair-coupling factor n=3 Tax=Halomonas TaxID=2745 RepID=A0A7Z0RVW7_9GAMM)

HSP 1 Score: 613 bits (1581), Expect = 3.890e-209
Identity = 313/348 (89.94%), Postives = 330/348 (94.83%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGSDQWEKAR+KAAEKIRDTAAELLD+YARREAQ+GVVY SP EEY RFA +FPFEET DQ AAI+AVI DMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNI L+SRFT GK   +TL+ IKSGQTDIVIGTHKLL+KSVELPKMGLLIIDEEHRFGV+QKEKLKTLRAE+DILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ    +IKEALLREILRGGQVY LHNEVKTIEN+AEK+REL+PEARVAVAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVPSANT+IIERA
Sbjct:  541 PLHKLGSDQWEKARKKAAEKIRDTAAELLDIYARREAQEGVVYTSPDEEYDRFAASFPFEETPDQEAAIDAVIDDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLVSRFTQGKAMKETLDHIKSGQTDIVIGTHKLLSKSVELPKMGLLIIDEEHRFGVSQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRADGVIKEALLREILRGGQVYFLHNEVKTIENAAEKVRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTVIIERA 888

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: UPI001D09C0CB (transcription-repair coupling factor n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D09C0CB)

HSP 1 Score: 611 bits (1576), Expect = 2.250e-208
Identity = 311/348 (89.37%), Postives = 331/348 (95.11%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PL+KLGSDQWEKARRKAAEKIRDTAAELLD+YARREA++G VY++P EEY RFA +FPFEET DQ AAIEAVI DM SPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNI LISRFT GKE T+TLE+IK G  DIVIGTHKLL+KSVELPKMGLLIIDEEHRFGVAQKEKLK+LRAE+DILTLTATPIPRTLNMAMSGIRDLSIIATPPA+RLSVKTFVQQH+ S+IKEALLRE+LRGGQVY LHNEVKTIEN+AEKIREL+PEARV VAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVPSANTI+IERA
Sbjct:  542 PLNKLGSDQWEKARRKAAEKIRDTAAELLDIYARREAREGTVYQAPDEEYARFAASFPFEETPDQKAAIEAVIDDMVSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTGGKEMTKTLENIKEGHADIVIGTHKLLSKSVELPKMGLLIIDEEHRFGVAQKEKLKSLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPPAKRLSVKTFVQQHNESLIKEALLRELLRGGQVYFLHNEVKTIENAAEKIRELVPEARVGVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERA 889

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A1M7E9L3_9GAMM (Transcription-repair-coupling factor n=1 Tax=Halomonas subglaciescola TaxID=29571 RepID=A0A1M7E9L3_9GAMM)

HSP 1 Score: 607 bits (1566), Expect = 6.920e-207
Identity = 306/348 (87.93%), Postives = 331/348 (95.11%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGSDQWEKAR+KAAEKIRDTAAELLD+YARREAQQGVVY++PG++Y RF+ +FPFEET DQ AAI AV+ D+T+PQPMDRV+CGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGL+SRFT GK ++  LE IK+GQTDIVIGTHKLL+KSVELPKMGLLIIDEEHRFGV QKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ +  +IKEALLREILRGGQVY LHNEVKTIEN+AEKIREL+P+ARV VAHGQLPERSLER+MSDFYHRRFNVLVCSTIIE+GIDVPSANTI+IERA
Sbjct:  541 PLHKLGSDQWEKARKKAAEKIRDTAAELLDIYARREAQQGVVYDTPGDDYQRFSASFPFEETPDQEAAINAVVRDLTAPQPMDRVICGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLLSRFTGGKGSSDALEKIKNGQTDIVIGTHKLLSKSVELPKMGLLIIDEEHRFGVTQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNDGVIKEALLREILRGGQVYFLHNEVKTIENAAEKIRELVPDARVVVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIESGIDVPSANTILIERA 888

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A556W0M3_HALSX (Transcription-repair-coupling factor n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A556W0M3_HALSX)

HSP 1 Score: 605 bits (1560), Expect = 5.490e-206
Identity = 309/348 (88.79%), Postives = 327/348 (93.97%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGSDQWEKAR+KAAEKIRDTAAELLD+YARREAQ+GVVY +P +EY RFA +FPFEET DQ AAIEAVI DMTSPQPMDRVVCGDVGFGKTEVAMRAAFLA QS RQVVVLVPTTLLARQH+ENFRDRFADTAVNI LISRFT GK   +TL  I+ GQTDIVIGTHKLL+KSVELP+MGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQ+H+   IKEALLREILRGGQVY LHNEVKTIEN+AEKIREL+P+ARVAVAHGQLPERSLER+MSDFYHRRFNVLVCSTIIETGIDVP+ANTIIIERA
Sbjct:  541 PLHKLGSDQWEKARKKAAEKIRDTAAELLDIYARREAQEGVVYAAPDDEYQRFAASFPFEETPDQQAAIEAVIKDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAAQSNRQVVVLVPTTLLARQHYENFRDRFADTAVNISLISRFTQGKTMNETLSRIREGQTDIVIGTHKLLSKSVELPRMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQRHEDGTIKEALLREILRGGQVYFLHNEVKTIENTAEKIRELVPDARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPNANTIIIERA 888

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: UPI0003488B9F (transcription-repair coupling factor n=1 Tax=Halomonas jeotgali TaxID=553386 RepID=UPI0003488B9F)

HSP 1 Score: 600 bits (1546), Expect = 6.900e-204
Identity = 301/348 (86.49%), Postives = 331/348 (95.11%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PLHKLGS+QWEKAR+KAAEK+RDTAAELLD+YARREA+QGV++++PG++Y RFA +FPFEET DQ AAI+AV+ D+T+PQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVN+ L+SR T GK AT+ L  +K+GQTDIVIGTHKLL+KSVELP+MGLL+IDEEHRFGVAQKEKLKTLRAE+DILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ     IKEALLREILRGGQVYVLHNEVKTI+N+AEKIREL+P+ARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTI+IERA
Sbjct:  541 PLHKLGSEQWEKARKKAAEKVRDTAAELLDIYARREARQGVIHDAPGDDYQRFAASFPFEETPDQKAAIDAVVDDLTAPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNVSLLSRATGGKGATEALNRVKNGQTDIVIGTHKLLSKSVELPQMGLLVIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRADGTIKEALLREILRGGQVYVLHNEVKTIDNAAEKIRELVPDARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTILIERA 888

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BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Match: A0A2N7UFP7_9GAMM (Transcription-repair-coupling factor n=1 Tax=Halomonas urumqiensis TaxID=1684789 RepID=A0A2N7UFP7_9GAMM)

HSP 1 Score: 580 bits (1494), Expect = 4.480e-196
Identity = 297/348 (85.34%), Postives = 321/348 (92.24%), Query Frame = 1

Query:    1 PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEYVRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGKEATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAVAHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA 1044
            PL++LGS+QWEKARR+AAEKIRDTAAELLD+YARREA+QG     P  EY RFA NFPFEET DQHAAI AVI DMT+ +PMDRVVCGDVGFGKTEVAMRAAFLAV SGRQVVVLVPTTLLARQHFENFRDRFADTAVNI LISRFT GK     L+ I++GQ DIVIGTHKLL+KS++LP MGLLIIDEEHRFGVAQKE+LK+LRAEVDILT+TATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQ D +IIKEALLREILRGGQVY+LHNEVKTIE++AEKIREL+PEARV VAHGQLPERSLER+MSDFYH+RFNVLVCSTIIETGIDVPSANTIIIERA
Sbjct:  543 PLNRLGSEQWEKARRRAAEKIRDTAAELLDIYARREARQGFACAEPDAEYARFAANFPFEETPDQHAAITAVIEDMTAQRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIELISRFTEGKGQAAALKRIENGQADIVIGTHKLLSKSMKLPNMGLLIIDEEHRFGVAQKERLKSLRAEVDILTMTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRDEAIIKEALLREILRGGQVYLLHNEVKTIESAAEKIRELVPEARVGVAHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIIIERA 890

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig75708.17859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A265DU64_9GAMM	1.790e-225	97.70	Transcription-repair-coupling factor n=41 Tax=root...	[more]
F7SP50_9GAMM	2.320e-214	91.67	Transcription-repair-coupling factor n=91 Tax=Halo...	[more]
A0A0P8CKR9_9GAMM	2.450e-214	91.95	Transcription-repair-coupling factor n=12 Tax=Halo...	[more]
A0A368U133_9GAMM	2.330e-211	90.52	Transcription-repair-coupling factor n=4 Tax=Halom...	[more]
A0A7Z0RVW7_9GAMM	3.890e-209	89.94	Transcription-repair-coupling factor n=3 Tax=Halom...	[more]
UPI001D09C0CB	2.250e-208	89.37	transcription-repair coupling factor n=1 Tax=Halom...	[more]
A0A1M7E9L3_9GAMM	6.920e-207	87.93	Transcription-repair-coupling factor n=1 Tax=Halom...	[more]
A0A556W0M3_HALSX	5.490e-206	88.79	Transcription-repair-coupling factor n=1 Tax=Halom...	[more]
UPI0003488B9F	6.900e-204	86.49	transcription-repair coupling factor n=1 Tax=Halom...	[more]
A0A2N7UFP7_9GAMM	4.480e-196	85.34	Transcription-repair-coupling factor n=1 Tax=Halom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig75708	contig	M-pyrifera_M_contig75708:2..1045 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	667.2
Seed ortholog evalue	4.3e-189
Seed eggNOG ortholog	1380358.JADJ01000011_gene169
Preferred name	mfd
KEGG ko	ko:K03723
KEGG Pathway	ko03420,map03420
Hectar predicted targeting category	other localisation
GOs	GO:0000715,GO:0000716,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008094,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0031323,GO:0031326,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0043175,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070063,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
EggNOG OGs	1MUXG@1224,1RNCU@1236,1XI5I@135619,COG1197@1,COG1197@2
COG Functional cat.	L
Best tax level	Oceanospirillales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03400
Exons	1
Model size	1044
Cds size	1044
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816655.404522-CDS-M-pyrifera_M_contig75708:1..1045	1622816655.404522-CDS-M-pyrifera_M_contig75708:1..1045	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig75708 2..1045 +
1692278101.4177148-CDS-M-pyrifera_M_contig75708:1..1045	1692278101.4177148-CDS-M-pyrifera_M_contig75708:1..1045	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig75708 2..1045 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig75708.17859.1	prot_M-pyrifera_M_contig75708.17859.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig75708 2..1045 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig75708:2..1045+
coding sequence from alignment at M-pyrifera_M_contig75708:2..1045+

protein sequence of mRNA_M-pyrifera_M_contig75708.17859.1

>prot_M-pyrifera_M_contig75708.17859.1 ID=prot_M-pyrifera_M_contig75708.17859.1|Name=mRNA_M-pyrifera_M_contig75708.17859.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=348bp
PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYESPGEEY
VRFAGNFPFEETADQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMR
AAFLAVQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNIGLISRFTSGK
EATQTLESIKSGQTDIVIGTHKLLAKSVELPKMGLLIIDEEHRFGVAQKE
KLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFV
QQHDTSIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAV
AHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERA

mRNA from alignment at M-pyrifera_M_contig75708:2..1045+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig75708.17859.1 ID=mRNA_M-pyrifera_M_contig75708.17859.1|Name=mRNA_M-pyrifera_M_contig75708.17859.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig75708:2..1045+ (Macrocystis pyrifera P11B4 male)
CCGCTGCATAAACTCGGTTCGGATCAGTGGGAGAAAGCCCGCCGTAAAGC
GGCCGAGAAGATTCGCGATACCGCCGCGGAGCTGCTGGATGTGTACGCCC
GGCGGGAAGCCCAGCAAGGGGTGGTCTACGAATCCCCTGGCGAAGAGTAT
GTTCGCTTTGCGGGCAACTTCCCGTTTGAGGAGACCGCCGATCAGCACGC
GGCGATTGAAGCAGTCATCAGCGACATGACCTCGCCGCAGCCCATGGATC
GTGTGGTATGTGGCGACGTCGGCTTCGGCAAAACCGAAGTAGCCATGCGC
GCTGCATTTCTGGCCGTGCAGTCTGGGCGCCAAGTGGTGGTGCTTGTACC
CACCACCCTATTGGCCCGCCAGCACTTCGAGAATTTCCGTGACCGTTTTG
CTGACACTGCCGTCAATATTGGCCTGATCTCCCGCTTCACCAGTGGCAAA
GAGGCCACCCAGACGCTGGAGAGCATTAAGAGCGGCCAAACGGATATCGT
CATCGGCACCCACAAGCTACTCGCCAAGAGTGTTGAGCTGCCCAAAATGG
GGCTGCTGATTATCGATGAGGAGCACCGCTTTGGTGTCGCGCAAAAAGAG
AAGCTCAAAACGCTACGCGCCGAAGTCGATATTTTGACCCTAACCGCTAC
TCCGATCCCGCGCACGCTCAATATGGCCATGAGCGGCATCCGCGATCTGT
CGATCATTGCCACGCCACCCGCTCGGCGCCTATCAGTCAAAACCTTTGTC
CAGCAGCACGACACCAGCATCATCAAGGAAGCTCTGCTGCGCGAGATACT
GCGCGGGGGGCAGGTGTATGTGCTGCACAACGAAGTCAAAACCATTGAGA
ACAGCGCCGAAAAGATCCGCGAACTGATCCCCGAAGCACGGGTCGCGGTC
GCCCACGGACAGCTCCCCGAGCGCAGCCTGGAGCGGATCATGTCGGACTT
CTATCACCGGCGCTTTAACGTGTTGGTATGCTCGACTATTATTGAAACCG
GCATTGATGTGCCCAGCGCCAATACCATTATTATCGAACGCGCT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig75708:2..1045+

>mRNA_M-pyrifera_M_contig75708.17859.1 ID=mRNA_M-pyrifera_M_contig75708.17859.1|Name=mRNA_M-pyrifera_M_contig75708.17859.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2088bp|location=Sequence derived from alignment at M-pyrifera_M_contig75708:2..1045+ (Macrocystis pyrifera P11B4 male)
CCGCTGCATAAACTCGGTTCGGATCAGTGGGAGAAAGCCCGCCGTAAAGC
GGCCGAGAAGATTCGCGATACCGCCGCGGAGCTGCTGGATGTGTACGCCC
GGCGGGAAGCCCAGCAAGGGGTGGTCTACGAATCCCCTGGCGAAGAGTAT
GTTCGCTTTGCGGGCAACTTCCCGTTTGAGGAGACCGCCGATCAGCACGC
GGCGATTGAAGCAGTCATCAGCGACATGACCTCGCCGCAGCCCATGGATC
GTGTGGTATGTGGCGACGTCGGCTTCGGCAAAACCGAAGTAGCCATGCGC
GCTGCATTTCTGGCCGTGCAGTCTGGGCGCCAAGTGGTGGTGCTTGTACC
CACCACCCTATTGGCCCGCCAGCACTTCGAGAATTTCCGTGACCGTTTTG
CTGACACTGCCGTCAATATTGGCCTGATCTCCCGCTTCACCAGTGGCAAA
GAGGCCACCCAGACGCTGGAGAGCATTAAGAGCGGCCAAACGGATATCGT
CATCGGCACCCACAAGCTACTCGCCAAGAGTGTTGAGCTGCCCAAAATGG
GGCTGCTGATTATCGATGAGGAGCACCGCTTTGGTGTCGCGCAAAAAGAG
AAGCTCAAAACGCTACGCGCCGAAGTCGATATTTTGACCCTAACCGCTAC
TCCGATCCCGCGCACGCTCAATATGGCCATGAGCGGCATCCGCGATCTGT
CGATCATTGCCACGCCACCCGCTCGGCGCCTATCAGTCAAAACCTTTGTC
CAGCAGCACGACACCAGCATCATCAAGGAAGCTCTGCTGCGCGAGATACT
GCGCGGGGGGCAGGTGTATGTGCTGCACAACGAAGTCAAAACCATTGAGA
ACAGCGCCGAAAAGATCCGCGAACTGATCCCCGAAGCACGGGTCGCGGTC
GCCCACGGACAGCTCCCCGAGCGCAGCCTGGAGCGGATCATGTCGGACTT
CTATCACCGGCGCTTTAACGTGTTGGTATGCTCGACTATTATTGAAACCG
GCATTGATGTGCCCAGCGCCAATACCATTATTATCGAACGCGCTCCGCTG
CATAAACTCGGTTCGGATCAGTGGGAGAAAGCCCGCCGTAAAGCGGCCGA
GAAGATTCGCGATACCGCCGCGGAGCTGCTGGATGTGTACGCCCGGCGGG
AAGCCCAGCAAGGGGTGGTCTACGAATCCCCTGGCGAAGAGTATGTTCGC
TTTGCGGGCAACTTCCCGTTTGAGGAGACCGCCGATCAGCACGCGGCGAT
TGAAGCAGTCATCAGCGACATGACCTCGCCGCAGCCCATGGATCGTGTGG
TATGTGGCGACGTCGGCTTCGGCAAAACCGAAGTAGCCATGCGCGCTGCA
TTTCTGGCCGTGCAGTCTGGGCGCCAAGTGGTGGTGCTTGTACCCACCAC
CCTATTGGCCCGCCAGCACTTCGAGAATTTCCGTGACCGTTTTGCTGACA
CTGCCGTCAATATTGGCCTGATCTCCCGCTTCACCAGTGGCAAAGAGGCC
ACCCAGACGCTGGAGAGCATTAAGAGCGGCCAAACGGATATCGTCATCGG
CACCCACAAGCTACTCGCCAAGAGTGTTGAGCTGCCCAAAATGGGGCTGC
TGATTATCGATGAGGAGCACCGCTTTGGTGTCGCGCAAAAAGAGAAGCTC
AAAACGCTACGCGCCGAAGTCGATATTTTGACCCTAACCGCTACTCCGAT
CCCGCGCACGCTCAATATGGCCATGAGCGGCATCCGCGATCTGTCGATCA
TTGCCACGCCACCCGCTCGGCGCCTATCAGTCAAAACCTTTGTCCAGCAG
CACGACACCAGCATCATCAAGGAAGCTCTGCTGCGCGAGATACTGCGCGG
GGGGCAGGTGTATGTGCTGCACAACGAAGTCAAAACCATTGAGAACAGCG
CCGAAAAGATCCGCGAACTGATCCCCGAAGCACGGGTCGCGGTCGCCCAC
GGACAGCTCCCCGAGCGCAGCCTGGAGCGGATCATGTCGGACTTCTATCA
CCGGCGCTTTAACGTGTTGGTATGCTCGACTATTATTGAAACCGGCATTG
ATGTGCCCAGCGCCAATACCATTATTATCGAACGCGCT