mRNA_M-pyrifera_M_contig75698.17854.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75698.17854.1
Unique NamemRNA_M-pyrifera_M_contig75698.17854.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A7X7KF66_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7KF66_9BACT)

HSP 1 Score: 127 bits (319), Expect = 1.850e-34
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   19 RSLELGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPD-PRHLEGFM 465
            RS EL  RFIGFGD QF++G + +A  RYRKA +  P  A+A+FR+G AM A+G+YDLA  +   GL + P WA   F L +L+  +  A   HL+AL++    +PLN DL FLV   L+F G++D +  +F RA  ++ D   HL  F+
Sbjct:    2 RSRELAWRFIGFGDAQFARGEFAEANNRYRKAAQTGPQVADAWFRQGFAMTAIGRYDLAMRSISRGLAIDPNWASSRFDLDELFAHDAVAKQSHLDALVQAAADEPLNADLLFLVGVHLHFDGQQDLAQNYFQRAERIAGDNASHLWKFL 151          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A7C7V1P8_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V1P8_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 6.050e-27
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   19 RSLELGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPDPRHLEGFMATFDHARP 489
            RS+ LG +FIG+GDK F++  Y +A  RY+ A   AP    A+ R+  A++A+G+Y+LAA+A K GL L P W   GFR+  LYGEN  A   HL AL     Q+P N DL  LV   L+  G++  +     RAA ++ + R    F    D A+P
Sbjct:  145 RSVALGWKFIGYGDKHFARQRYREAYQRYKSATGVAPRLGAAWLRQTFALIAMGRYELAAKALKRGLELDPNWPRSGFRVDHLYGENKLAKAAHLNALADAATQEPHNGDLLLLVGLFLFSDGQQQRASLFLKRAAELAGEGR--SAFEPLLDAAQP 299          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A2G2JLB6_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JLB6_9BACT)

HSP 1 Score: 108 bits (271), Expect = 2.720e-25
Identity = 60/155 (38.71%), Postives = 85/155 (54.84%), Query Frame = 1
Query:   10 ANGRSLELGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPDPRHLEGFMATF 474
            +N  SLE G+RFI +GD  F Q    +A  RY+ A  AAPD AEA+FR+  A LA  + D A  + K G+ L P +   GF++ DLY  N  A    L+ L +     P N +  FLV   +YF G+   + ++F RAA++SP   H   ++A F
Sbjct:  192 SNSESLERGKRFIEYGDNLFKQQRIQEALGRYKSAESAAPDLAEAHFRKAIAYLATNRSDYALSSIKRGIFLDPGYVQSGFKIDDLYQNNTLAKSAMLDTLARRALDDPQNAEHMFLVGVVIYFDGQEQTAEKYFARAASLSPGADH--SYIAAF 344          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A831X633_9BACT (Tetratricopeptide repeat protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A831X633_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 6.090e-15
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   37 RRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPDPRHLEGFM 465
            +R +  G++ F+ G+Y  A  +Y++A+  AP     YF   QA LA+G+   A  A + G+ L P W    F+   LYG+       HL AL ++V +   +  L FL+A+QL+F G+R  +   F RA A++ D   ++ F+
Sbjct:  143 QRLLRKGNEAFAAGDYKSALGQYQQAVATAPLEPMGYFHLAQAHLAVGKLAEAGVAIERGMRLHPNWPKAPFQPRALYGDQAGDFQRHLGALAEQVGRNMNDESLLFLLAYQLWFDGQRAEATLLFERAGALAHDTTLIDRFL 285          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: UPI001B31FD3E (tetratricopeptide repeat protein n=1 Tax=Gemmata palustris TaxID=2822762 RepID=UPI001B31FD3E)

HSP 1 Score: 74.7 bits (182), Expect = 8.550e-13
Identity = 47/129 (36.43%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   40 RFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAA 426
            R +      F+ G+Y  A   + +AI A P  A AYF   QA  A GQ+  A    ++GL     W    F  A++Y         HL AL K V   P    LEFL+ +QL+FGGE+  S + F RAA
Sbjct:  208 RLVKLARAAFALGDYGRAAEHFERAIAADPTDARAYFLHAQARFAAGQFAEAVARIRDGLARDAKWPAAAFDPAEMYDGRADRFAAHLAALKKAVADNPGQATLEFLLGYQLWFGGEKAESEKLF-RAA 335          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A2D6A876_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6A876_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.710e-10
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   31 LGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGG 387
            L R ++  GD  F    YL A   Y +A +  PD A   F    A  A+GQYD AA A ++GL L P  A         YG      D+H++AL K +D++PL+     + A+ L F G
Sbjct:   23 LARYYVELGDLYFQTRRYLRATETYARAAQLVPDDAALRFVIADAWFAVGQYDKAAYAIRQGLHLDPELAASETDKRGFYG-FAEDFDKHMKALAKHLDERPLDAQALLVEAYNLRFSG 140          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A2Z3HFX3_9BACT (Uncharacterized protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3HFX3_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.400e-10
Identity = 42/128 (32.81%), Postives = 57/128 (44.53%), Query Frame = 1
Query:   40 RFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRA 423
            R IG     F+  +Y  A   + +A  + P  A  YF   QA  A G++  A    ++GL   P W    F   +LY         HL AL       P  P LEFL+ +QL+FGGER  + + F  A
Sbjct:  196 RQIGLARAAFAAADYGRAADHFTRASASDPGDARTYFLHAQAKFAAGEFVEAVARVRDGLARDPKWPAAPFDPTELYDGRADRYAAHLAALKNATADNPGQPALEFLLGYQLWFGGERAEAEKLFRTA 323          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A6C2YSZ9_9BACT (Tetratricopeptide tpr_2 repeat protein:: TPR_19 n=1 Tax=Tuwongella immobilis TaxID=692036 RepID=A0A6C2YSZ9_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 3.670e-8
Identity = 42/149 (28.19%), Postives = 67/149 (44.97%), Query Frame = 1
Query:   19 RSLELGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPDPRHLEGFM 465
            R L+L R         F +  Y  A  R  +A++  P+ AEA F  GQA  ALG +  A     +G      W      LA L+      ++  +  L  ++++   NP L FL+A Q +F G+R+A+   F R   +  D   ++ F+
Sbjct:  194 RQLQLARA-------AFQEQMYGRAAERANRALQLDPELAEAQFLVGQAQFALGDFTEATRTLADGATRFANWPNRAESLAKLFQAAPDRLEVRMRDLRTDLERDLANPALNFLLAHQQWFQGDREAATARFRRLMPLVDDSTGIQRFL 335          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A7V8VFU5_9BACT (Uncharacterized protein n=1 Tax=Thermogemmata fonticola TaxID=2755323 RepID=A0A7V8VFU5_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 9.240e-7
Identity = 40/132 (30.30%), Postives = 62/132 (46.97%), Query Frame = 1
Query:   37 RRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEHLEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAM 432
            +R +  G   F+ G Y  A   +  A +  PD     + + QA +A G+Y  A  A + GL   P  A   F   + YG       +HL AL + V  QP  P L +L+AWQL+  GE+  + + + R+  +
Sbjct:  327 QRLVQQGRAAFAAGEYGRAARLFAGAAEKDPDLPFPRYWQAQAEIAAGRYADAFAALRLGLQRHPQ-AGPHFDPKEPYGSQPRKYADHLAALRRAVADQPQEPALAYLLAWQLWLAGEKAEARRWWERSQTL 457          
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Match: A0A532AUV2_9BACT (Secretin_N domain-containing protein n=3 Tax=Nitrospirae TaxID=40117 RepID=A0A532AUV2_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 4.010e-5
Identity = 42/122 (34.43%), Postives = 55/122 (45.08%), Query Frame = 1
Query:   55 GDKQFSQGNYLDAQLRYRKAIKAAP--------------DFAEAYFRRGQAMLALGQYDLAAEAFKEGLILKPMWA------LEGFRLADLYGENLPA--------IDEHLEALLKEVDQQP 336
            GD+Q + GN+ +A L Y++A+K  P                A AY  RG+  L   Q DLA E FK  L ++P  A      LE  RL D  G+N  A         DE +EA  K V+  P
Sbjct:   37 GDQQLASGNWEEASLAYKQALKDDPFNSTLLSKYTMARERAAAAYEERGRGYLKDHQPDLAMEQFKRALTMEPSSAEHQSGLLEALRLKDARGQNREADRLAQLGRTDEAMEAYAKAVELDP 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75698.17854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7X7KF66_9BACT1.850e-3444.00Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A7C7V1P8_9PLAN6.050e-2740.76Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
A0A2G2JLB6_9BACT2.720e-2538.71Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
A0A831X633_9BACT6.090e-1532.87Tetratricopeptide repeat protein n=1 Tax=Gemmatace... [more]
UPI001B31FD3E8.550e-1336.43tetratricopeptide repeat protein n=1 Tax=Gemmata p... [more]
A0A2D6A876_9BACT1.710e-1035.29Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2Z3HFX3_9BACT2.400e-1032.81Uncharacterized protein n=1 Tax=Gemmata obscuriglo... [more]
A0A6C2YSZ9_9BACT3.670e-828.19Tetratricopeptide tpr_2 repeat protein:: TPR_19 n=... [more]
A0A7V8VFU5_9BACT9.240e-730.30Uncharacterized protein n=1 Tax=Thermogemmata font... [more]
A0A532AUV2_9BACT4.010e-534.43Secretin_N domain-containing protein n=3 Tax=Nitro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75698contigM-pyrifera_M_contig75698:152..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.5
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog314230.DSM3645_22309
KEGG koko:K02200,ko:K04018,ko:K19225,ko:K21007
KEGG Pathwayko02025,map02025
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TPR repeat
EggNOG OGs2J0SU@203682,COG4235@1,COG4235@2
EC3.4.21.105
COG Functional cat.O
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.0184574-CDS-M-pyrifera_M_contig75698:151..6401622816655.0184574-CDS-M-pyrifera_M_contig75698:151..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75698 152..640 -
1692278101.2315848-CDS-M-pyrifera_M_contig75698:151..6401692278101.2315848-CDS-M-pyrifera_M_contig75698:151..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75698 152..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75698.17854.1prot_M-pyrifera_M_contig75698.17854.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75698 152..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75698.17854.1

>prot_M-pyrifera_M_contig75698.17854.1 ID=prot_M-pyrifera_M_contig75698.17854.1|Name=mRNA_M-pyrifera_M_contig75698.17854.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
VGQANGRSLELGRRFIGFGDKQFSQGNYLDAQLRYRKAIKAAPDFAEAYF
RRGQAMLALGQYDLAAEAFKEGLILKPMWALEGFRLADLYGENLPAIDEH
LEALLKEVDQQPLNPDLEFLVAWQLYFGGERDASHQHFVRAAAMSPDPRH
LEGFMATFDHARP
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mRNA from alignment at M-pyrifera_M_contig75698:152..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75698.17854.1 ID=mRNA_M-pyrifera_M_contig75698.17854.1|Name=mRNA_M-pyrifera_M_contig75698.17854.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig75698:152..640- (Macrocystis pyrifera P11B4 male)
GTAGGGCAGGCGAACGGGCGAAGCCTTGAGTTAGGTCGCCGGTTCATTGG TTTCGGTGATAAGCAATTCTCGCAAGGGAATTATCTCGACGCCCAGTTGC GATACCGTAAGGCCATCAAAGCGGCACCCGATTTCGCGGAGGCCTATTTC CGTCGTGGACAGGCGATGCTCGCCTTGGGCCAATACGATCTGGCCGCCGA GGCATTCAAAGAAGGTCTCATTCTCAAACCAATGTGGGCGTTAGAAGGTT TCAGGCTTGCCGATCTGTATGGCGAAAATCTGCCAGCCATCGACGAACAC CTAGAGGCCTTACTAAAAGAAGTGGACCAGCAGCCGTTGAACCCCGACCT GGAATTCCTGGTTGCTTGGCAGTTGTACTTCGGTGGCGAGCGCGATGCAT CGCATCAGCACTTCGTTCGGGCCGCGGCCATGTCTCCCGATCCACGCCAC CTCGAAGGCTTCATGGCCACCTTCGACCACGCCAGGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75698:152..640-

>mRNA_M-pyrifera_M_contig75698.17854.1 ID=mRNA_M-pyrifera_M_contig75698.17854.1|Name=mRNA_M-pyrifera_M_contig75698.17854.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig75698:152..640- (Macrocystis pyrifera P11B4 male)
GTAGGGCAGGCGAACGGGCGAAGCCTTGAGTTAGGTCGCCGGTTCATTGG
TTTCGGTGATAAGCAATTCTCGCAAGGGAATTATCTCGACGCCCAGTTGC
GATACCGTAAGGCCATCAAAGCGGCACCCGATTTCGCGGAGGCCTATTTC
CGTCGTGGACAGGCGATGCTCGCCTTGGGCCAATACGATCTGGCCGCCGA
GGCATTCAAAGAAGGTCTCATTCTCAAACCAATGTGGGCGTTAGAAGGTT
TCAGGCTTGCCGATCTGTATGGCGAAAATCTGCCAGCCATCGACGAACAC
CTAGAGGCCTTACTAAAAGAAGTGGACCAGCAGCCGTTGAACCCCGACCT
GGAATTCCTGGTTGCTTGGCAGTTGTACTTCGGTGGCGAGCGCGATGCAT
CGCATCAGCACTTCGTTCGGGCCGCGGCCATGTCTCCCGATCCACGCCAC
CTCGAAGGCTTCATGGCCACCTTCGACCACGCCAGGCCTGTAGGGCAGGC
GAACGGGCGAAGCCTTGAGTTAGGTCGCCGGTTCATTGGTTTCGGTGATA
AGCAATTCTCGCAAGGGAATTATCTCGACGCCCAGTTGCGATACCGTAAG
GCCATCAAAGCGGCACCCGATTTCGCGGAGGCCTATTTCCGTCGTGGACA
GGCGATGCTCGCCTTGGGCCAATACGATCTGGCCGCCGAGGCATTCAAAG
AAGGTCTCATTCTCAAACCAATGTGGGCGTTAGAAGGTTTCAGGCTTGCC
GATCTGTATGGCGAAAATCTGCCAGCCATCGACGAACACCTAGAGGCCTT
ACTAAAAGAAGTGGACCAGCAGCCGTTGAACCCCGACCTGGAATTCCTGG
TTGCTTGGCAGTTGTACTTCGGTGGCGAGCGCGATGCATCGCATCAGCAC
TTCGTTCGGGCCGCGGCCATGTCTCCCGATCCACGCCACCTCGAAGGCTT
CATGGCCACCTTCGACCACGCCAGGCCT
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