mRNA_M-pyrifera_M_contig75689.17851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75689.17851.1
Unique NamemRNA_M-pyrifera_M_contig75689.17851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A1E3HLF6_9TREE (Conserved oligomeric Golgi complex subunit 6 n=4 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3HLF6_9TREE)

HSP 1 Score: 58.2 bits (139), Expect = 3.930e-8
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+LAWVHQ  A E E    +FG   G  + GQ+   G+ +G E G      A EVL K L+G++RPL++R
Sbjct:  331 RYVGDMLAWVHQTTASEGEFLDGVFGVSRGKRMVGQERTRGERDGEEKGE--EKMAREVLDKNLEGLSRPLKLR 402          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A5J4Y8M6_9CHLO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8M6_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 8.920e-7
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RY+GD+LAWVHQA+A E+EL  +LFG    S  +G    S            + S+  +L KVL+G+ RPL++R
Sbjct:  280 RYLGDMLAWVHQALASERELLISLFGQDNQSRTSGSHADSPSD---------VPSSSALLDKVLEGVCRPLKIR 344          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A427YUY4_9TREE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YUY4_9TREE)

HSP 1 Score: 54.3 bits (129), Expect = 8.990e-7
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+LAWVHQ  A E E   +LFG GPG  + GQ   + +         GL+  ++ L K L+G++RPL++R
Sbjct:  359 RYVGDMLAWVHQTTASEHEFLQSLFGVGPGRRMVGQPRSAEE---------GLV--KDALDKDLEGLSRPLKLR 421          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A7S3BC43_9VIRI (Conserved oligomeric Golgi complex subunit 6 (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BC43_9VIRI)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-6
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGG---LMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+  W+HQA+A E ELATALFG      VA ++  +G + G      G    +SA EVL +V +G+ RP + R
Sbjct:  302 RYVGDMCGWLHQAMAEEHELATALFGE-----VAEREADTGASNGNGAAAEGDEEEVSAAEVLDRVFEGVCRPFKAR 373          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A5C3EZF5_9BASI (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Pseudozyma flocculosa TaxID=84751 RepID=A0A5C3EZF5_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 1.680e-6
Identity = 36/88 (40.91%), Postives = 46/88 (52.27%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSG----------VAGQDLVSGQAEGGEGG----GGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+LAW+HQ +A E+E  TALFG   G G          + G   +S    GG G     G G     EVL + L+G  RPL++R
Sbjct:  350 RYVGDMLAWIHQTLASEREFLTALFGEKEGEGGRRIGQRRRGLEGSVDLSASLSGGAGDAAAMGPGEALVREVLNRNLEGCCRPLKIR 437          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A1E3IA47_9TREE (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3IA47_9TREE)

HSP 1 Score: 53.1 bits (126), Expect = 2.290e-6
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+LAWVHQA A E E   +LFG G      GQ+      E           A+E L K+L+G++RPL+ R
Sbjct:  339 RYVGDMLAWVHQATASENEFLESLFGLGQKGRWVGQERKEAVGEEEN-------LAKEALDKILEGLSRPLKSR 405          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A8H3YDD6_9TREE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3YDD6_9TREE)

HSP 1 Score: 52.8 bits (125), Expect = 3.150e-6
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVS------GQAEGGEGGGGGLMSAEEVLG-----KVLQGIARPLQVR 222
            RYVGD+LAWVHQA A E+E   ALF           D+ S      G+A G +GG     S EEVL      K L+G+ARPL+VR
Sbjct:  494 RYVGDMLAWVHQATAGEREFLDALF-----------DVTSYRRRMVGEARGTQGG---EASEEEVLARTCLDKALEGLARPLKVR 564          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: A0A2V0P5U2_9CHLO (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P5U2_9CHLO)

HSP 1 Score: 52.4 bits (124), Expect = 4.280e-6
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAE-------GGEGGGGG---LMSAEEVLGKVLQGIARPLQVR 222
            RYV D++AW HQA+A E+E   ALFG G   G  GQ               GG G G G    +S+  +L ++ +GI RPL+VR
Sbjct:  277 RYVADMMAWAHQALAGEREFVAALFGEGDPDGERGQGXXXXXXXXXXXXXXGGAGAGVGPADALSSAALLDRIFEGICRPLRVR 360          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: Q00T18_OSTTA (Conserved oligomeric Golgi complex subunit 6 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q00T18_OSTTA)

HSP 1 Score: 51.6 bits (122), Expect = 8.020e-6
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+L+WVH AVA E+E   A+FG       + +D+  G+             A+E+LGKV   + RPL+VR
Sbjct:  344 RYVGDMLSWVHAAVASEREFCDAVFGDD--GQASDRDVSEGELA--------FDPAKELLGKVFDAVCRPLKVR 407          
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Match: COG6_CRYNJ (Conserved oligomeric Golgi complex subunit 6 n=8 Tax=Cryptococcus TaxID=5206 RepID=COG6_CRYNJ)

HSP 1 Score: 51.6 bits (122), Expect = 8.020e-6
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGGGGLMSAEEVLGKVLQGIARPLQVR 222
            RYVGD+LAWVHQ  A E E    +FG      V  +    GQ  GGE G    M A EVL K L+G++RPL++R
Sbjct:  322 RYVGDMLAWVHQTTATEHEFLEGMFG------VKEKKRWVGQERGGEEGEEERM-ASEVLDKDLEGLSRPLKLR 388          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75689.17851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A1E3HLF6_9TREE3.930e-845.95Conserved oligomeric Golgi complex subunit 6 n=4 T... [more]
A0A5J4Y8M6_9CHLO8.920e-741.89Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A427YUY4_9TREE8.990e-743.24Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A7S3BC43_9VIRI1.200e-644.16Conserved oligomeric Golgi complex subunit 6 (Frag... [more]
A0A5C3EZF5_9BASI1.680e-640.91Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
A0A1E3IA47_9TREE2.290e-643.24Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
A0A8H3YDD6_9TREE3.150e-645.88Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A2V0P5U2_9CHLO4.280e-640.48Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
Q00T18_OSTTA8.020e-640.54Conserved oligomeric Golgi complex subunit 6 n=2 T... [more]
COG6_CRYNJ8.020e-647.30Conserved oligomeric Golgi complex subunit 6 n=8 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75689contigM-pyrifera_M_contig75689:412..681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.9006414-CDS-M-pyrifera_M_contig75689:411..5581622816654.9006414-CDS-M-pyrifera_M_contig75689:411..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75689 412..558 +
1692278101.192309-CDS-M-pyrifera_M_contig75689:411..5581692278101.192309-CDS-M-pyrifera_M_contig75689:411..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75689 412..558 +
1622816654.9152768-CDS-M-pyrifera_M_contig75689:606..6811622816654.9152768-CDS-M-pyrifera_M_contig75689:606..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75689 607..681 +
1692278101.201629-CDS-M-pyrifera_M_contig75689:606..6811692278101.201629-CDS-M-pyrifera_M_contig75689:606..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75689 607..681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75689.17851.1prot_M-pyrifera_M_contig75689.17851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75689 412..681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75689.17851.1

>prot_M-pyrifera_M_contig75689.17851.1 ID=prot_M-pyrifera_M_contig75689.17851.1|Name=mRNA_M-pyrifera_M_contig75689.17851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
RYVGDILAWVHQAVAMEKELATALFGSGPGSGVAGQDLVSGQAEGGEGGG
GGLMSAEEVLGKVLQGIARPLQVR
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mRNA from alignment at M-pyrifera_M_contig75689:412..681+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75689.17851.1 ID=mRNA_M-pyrifera_M_contig75689.17851.1|Name=mRNA_M-pyrifera_M_contig75689.17851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig75689:412..681+ (Macrocystis pyrifera P11B4 male)
AGGTATGTCGGTGACATCCTGGCGTGGGTCCACCAGGCCGTGGCCATGGA GAAAGAGCTGGCCACAGCTTTATTCGGCTCAGGCCCGGGCTCGGGCGTAG CAGGCCAAGACTTGGTCTCGGGCCAAGCGGAGGGCGGGGAAGGAGGCGTT ACTCTGCCGGAAAGCCACGAAGAAGGCGTCGTGGGAGGGGGGGAGGGGGG GGGGTTGATGTCGGCGGAGGAGGTGCTGGGCAAGGTTCTCCAGGGCATCG CTAGGCCTTTGCAGGTAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75689:412..681+

>mRNA_M-pyrifera_M_contig75689.17851.1 ID=mRNA_M-pyrifera_M_contig75689.17851.1|Name=mRNA_M-pyrifera_M_contig75689.17851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig75689:412..681+ (Macrocystis pyrifera P11B4 male)
AGGTATGTCGGTGACATCCTGGCGTGGGTCCACCAGGCCGTGGCCATGGA
GAAAGAGCTGGCCACAGCTTTATTCGGCTCAGGCCCGGGCTCGGGCGTAG
CAGGCCAAGACTTGGTCTCGGGCCAAGCGGAGGGCGGGGAAGGAGGCAGG
TATGTCGGTGACATCCTGGCGTGGGTCCACCAGGCCGTGGCCATGGAGAA
AGAGCTGGCCACAGCTTTATTCGGCTCAGGCCCGGGCTCGGGCGTAGCAG
GCCAAGACTTGGTCTCGGGCCAAGCGGAGGGCGGGGAAGGAGGCGGGGGG
GGGTTGATGTCGGCGGAGGAGGTGCTGGGCAAGGTTCTCCAGGGCATCGC
TAGGCCTTTGCAGGTAAGGGGGGGGGGGTTGATGTCGGCGGAGGAGGTGC
TGGGCAAGGTTCTCCAGGGCATCGCTAGGCCTTTGCAGGTAAGG
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