mRNA_M-pyrifera_M_contig75652.17844.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75652.17844.1
Unique NamemRNA_M-pyrifera_M_contig75652.17844.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A3D0S3L0_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A3D0S3L0_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 2.990e-10
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADVNPN--------GDSDPAHLTSVGGVLYFMADDG 162
            +FTA+    GRELW++DGT AGT +V D+NPN        G   P HLT+VGGV+YF ADDG
Sbjct:   53 FFTAADDTHGRELWKSDGTTAGTVMVKDINPNVVPYGGYGGYDGPQHLTAVGGVVYFSADDG 114          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A2E9RLC3_9GAMM (Uncharacterized protein n=2 Tax=unclassified Alcanivorax TaxID=2638842 RepID=A0A2E9RLC3_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 4.760e-10
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADVNPNGDSDPAHLTSVGGVLYFMADD 159
            YF A    +G ELWR+DGT AGT +VAD+NPNGDSDP  +T   G +YF ADD
Sbjct:   65 YFPAMNGMDGVELWRSDGTEAGTAMVADINPNGDSDPREITRFDGRVYFSADD 117          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A2H6KYE5_MICAE (Uncharacterized protein n=2 Tax=Microcystis aeruginosa TaxID=1126 RepID=A0A2H6KYE5_MICAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.790e-10
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADVNP-----NGDSDPAHLTSVGGVLYFMADDGV 165
            YFTA   + GRELW++DGTA GT LV D+ P     + DSDP++LT VG  L+F A+DGV
Sbjct:  130 YFTADDGENGRELWKSDGTATGTVLVRDIRPGSPTSSSDSDPSNLTVVGNTLFFSANDGV 189          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A517SDJ2_9PLAN (Cadherin domain protein n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SDJ2_9PLAN)

HSP 1 Score: 66.6 bits (161), Expect = 1.480e-9
Identity = 74/185 (40.00%), Postives = 93/185 (50.27%), Query Frame = 1
Query:    1 YFTA-STVDEGRELWRTDGTAAGTTLVADVNPNGDSDPAHLTSVGGV-LYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPEGTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGT-------------GQFAQLAVGQSSDPMMLKANAADTLLYFFADDGVHGSDPWVTDGTLVGTKTL 510
            YFTA   V+ GRELWRTDGTAAGT +VA++ PNGD D   +T   G  ++F A+DG XXXXXXXXXXXXXXXXXX        G +                              S GT             G    L V Q+S+P  L     + ++YF A+DG+ G + W TDGT  GT+ +
Sbjct:  275 YFTAVDIVNNGRELWRTDGTAAGTFMVANIKPNGDGDITDITPANGTSVFFSANDGAXXXXXXXXXXXXXXXXXXKDIQGVINGVNQGSNPSSMLWVNGVLYFSADDGIVGKELWKSDGTAAGTVLVRDIAQTGPNGVLDVKQNSNPHNL--TLVNGVVYFSANDGLEGFELWQTDGTTGGTQIV 457          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A7X7IPV1_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7IPV1_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 3.080e-9
Identity = 58/188 (30.85%), Postives = 75/188 (39.89%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADV-----------NPNGDSDPAHLTSVGGVLYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPEGTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGTGQFAQLAVGQSSDPMMLKANAADTLLYFFADDGVHGSDPWVTDGTLVGTKTLGDLDAGS 531
            YF+A     G ELWR+DGTAAGT +V D+            PN  S+PA+L +VGG L+F A D                           +GT++                              TGT          SS P  L     D +LYF ADDG HG + W +DGT  GT  + D+ AG+
Sbjct:   65 YFSAEDNTHGAELWRSDGTAAGTVMVKDIFSGTFTDSYGTYPNS-SNPANLVNVGGTLFFTAYDDDHGWELWTS-----------------DGTESGTRLVKDIF---------------------TGTFTDTDGTYPNSSTPSQL--TDVDGVLYFVADDGTHGLELWKSDGTEAGTTMVEDIRAGT 211          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: UPI0003467469 (hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI0003467469)

HSP 1 Score: 64.7 bits (156), Expect = 6.370e-9
Identity = 59/196 (30.10%), Postives = 74/196 (37.76%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADVNPNGDSD--------PAHLTSVGGVLYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPE------GTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGTGQFAQLAVGQSSDPMMLKANAADTL-----LYFFADDGVHGSDPWVTDGTLVGTKTLGDLDAGS 531
            YFTA   + GRELW +DGT+ GT L+ D+ P G SD        P  LT     LYF A+DG                        G        G+ AR                            S GT     +  G S       + A +       LYF ADDG HG++ WV+DGT  GT+ L D+  GS
Sbjct:  519 YFTADDGENGRELWVSDGTSEGTQLLVDIRP-GSSDYGYNYGSVPDDLTEFNDQLYFTANDGENGRELWVSDGTSEGTQLLVDINPGSSDYGYNYGSYARNLTEFNEQLYFTANDGDNGNELWVSDGTSEGTQLLVDINPGSSDYGYNYGSYARNLTEFNEQLYFTADDGEHGNELWVSDGTTEGTQLLVDIRPGS 713          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A521K640_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K640_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-8
Identity = 92/175 (52.57%), Postives = 103/175 (58.86%), Query Frame = 1
Query:   28 GRELWRTDGTAAGTTLVADVNPNG-DSDPAHLTSVGGVLYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPEGTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGTGQFAQLAV-------GQSSDPMMLKANAADTLLYFFADDGVHGSDPWVTDGTLVGTKTLGDLDAG 528
            G ELWRTDGT AGT LVAD+ P    SDP   T     L F ADDGV   XXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXX      ST  G +AQ A        GQ      ++A      ++F  +DGVHGS+PW +DGT+VGT+   D   G
Sbjct:    3 GVELWRTDGTTAGTQLVADIRPGAAGSDPQRFTRCADELLFTADDGVTGRXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXXXXXXXXXXFAFGASSTQLGVYAQGAAQVLHGFAGQGFGVSSIRA-VGSRRVFFSGNDGVHGSEPWSSDGTVVGTQMYDDFQPG 164          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A7C1KIE9_9BACT (Uncharacterized protein n=1 Tax=Gemmata sp. TaxID=1914242 RepID=A0A7C1KIE9_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 YFTASTVDEGRELWRTDGTAAGTTLVADVNPNGDSDPAHLTSVGGVLY 144
            YF A+     RELWRTDGTAAGT  VAD+NP G S+P +LT+V G L+
Sbjct:    2 YFAATDASGDRELWRTDGTAAGTWRVADINPIGSSNPRYLTNVNGTLF 49          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: A0A0G2ZGC0_9DELT (Flagellar hook-length control protein FliK n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZGC0_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.020e-8
Identity = 89/184 (48.37%), Postives = 107/184 (58.15%), Query Frame = 1
Query:    1 YFTASTVDEGR----ELWRTDGTAAGTTLVADVNPNGDSDPAHLTSVGGVLYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPEGTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGTGQFAQL---AVGQSSDPMMLKANAADTLLYFFADDGVHGSDPWVTDGTLVGTKTLGDLDAGS 531
            YF+A+    G     ELW++DGTAAGT  V ++N  GDS P  LT + G L F ADDG    XXXXXXXXXXXXXXX     G E     +     XXXXXXXXXXXXXXXXXXXXXX         +      +SS P       A + LYF ADD  HG++ W +DGT  GT+ + D+ AG+
Sbjct:   66 YFSANGAPAGESSDIELWKSDGTAAGTMRVENINRLGDSIPDLLTDLNGTLLFTADDGTRGVXXXXXXXXXXXXXXXREIGEGLESGGTSQIVTMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINPTPPPRSSGPAAGTLRVAGSTLYFLADDATHGTELWKSDGTEAGTQLVKDVVAGA 249          
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Match: UPI00093304BE (hyalin n=1 Tax=Microcystis aeruginosa TaxID=1126 RepID=UPI00093304BE)

HSP 1 Score: 62.0 bits (149), Expect = 5.230e-8
Identity = 54/172 (31.40%), Postives = 70/172 (40.70%), Query Frame = 1
Query:   34 ELWRTDGTAAGTTLVADVNPNGD------SDPAHLTSVGGVLYFMADDGVXXXXXXXXXXXXXXXXXXXXXXXGPEGTDAREXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGTGQFAQLAVGQSSDPMMLKANAADTLLYFFADDGVHGSDPWVTDGTLVGTKTLGDLDAGS 531
            ELW++DGTAAGT LV D+NP GD      S P +LT+VG  LYF ADD V                         +GT+A                                 G +   +   SS P  L   A    L+F A D V+G + W ++GT  GT  + D+ AGS
Sbjct:   98 ELWKSDGTAAGTVLVKDINPGGDYMVPFASFPKNLTAVGSTLYFTADDNVNGRELWKS-----------------DGTEAGTVLVKDIRP-----------------------GSYGSYSY--SSSPYNL--TAVGNTLFFTAFDDVNGEELWKSNGTAAGTVLVRDIRAGS 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75652.17844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D0S3L0_9ACTN2.990e-1054.84Uncharacterized protein n=1 Tax=Nocardioides sp. T... [more]
A0A2E9RLC3_9GAMM4.760e-1060.38Uncharacterized protein n=2 Tax=unclassified Alcan... [more]
A0A2H6KYE5_MICAE7.790e-1055.00Uncharacterized protein n=2 Tax=Microcystis aerugi... [more]
A0A517SDJ2_9PLAN1.480e-940.00Cadherin domain protein n=1 Tax=Caulifigura conifo... [more]
A0A7X7IPV1_9BACT3.080e-930.85Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
UPI00034674696.370e-930.10hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7... [more]
A0A521K640_9BACT1.070e-852.57Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7C1KIE9_9BACT1.600e-860.42Uncharacterized protein n=1 Tax=Gemmata sp. TaxID=... [more]
A0A0G2ZGC0_9DELT2.020e-848.37Flagellar hook-length control protein FliK n=1 Tax... [more]
UPI00093304BE5.230e-831.40hyalin n=1 Tax=Microcystis aeruginosa TaxID=1126 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75652contigM-pyrifera_M_contig75652:48..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.3
Seed ortholog evalue2e-09
Seed eggNOG ortholog118161.KB235922_gene1926
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium- and calmodulin-responsive adenylate cyclase activity
EggNOG OGs1GP04@1117,3VMQ4@52604,COG1520@1,COG1520@2,COG2931@1,COG2931@2
COG Functional cat.Q
Best tax levelPleurocapsales
Best eggNOG OGNA|NA|NA
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.4532735-CDS-M-pyrifera_M_contig75652:47..5811622816654.4532735-CDS-M-pyrifera_M_contig75652:47..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75652 48..581 -
1692278100.9834092-CDS-M-pyrifera_M_contig75652:47..5811692278100.9834092-CDS-M-pyrifera_M_contig75652:47..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75652 48..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75652.17844.1prot_M-pyrifera_M_contig75652.17844.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75652 48..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75652.17844.1

>prot_M-pyrifera_M_contig75652.17844.1 ID=prot_M-pyrifera_M_contig75652.17844.1|Name=mRNA_M-pyrifera_M_contig75652.17844.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
YFTASTVDEGRELWRTDGTAAGTTLVADVNPNGDSDPAHLTSVGGVLYFM
ADDGVHGRELWKTAGTPATTFLVKDIHPGPEGTDARELTAFQGALFFSSD
GPTTDRHLWRSDGTSTGTGQFAQLAVGQSSDPMMLKANAADTLLYFFADD
GVHGSDPWVTDGTLVGTKTLGDLDAGSP
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mRNA from alignment at M-pyrifera_M_contig75652:48..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75652.17844.1 ID=mRNA_M-pyrifera_M_contig75652.17844.1|Name=mRNA_M-pyrifera_M_contig75652.17844.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig75652:48..581- (Macrocystis pyrifera P11B4 male)
TACTTCACCGCGTCGACCGTGGACGAAGGCCGTGAGCTGTGGCGTACCGA CGGCACCGCCGCGGGCACGACGCTGGTCGCGGACGTGAACCCGAACGGCG ACAGCGACCCCGCGCACCTGACCTCGGTGGGCGGGGTGCTGTACTTCATG GCCGACGACGGCGTGCACGGGCGCGAGTTGTGGAAGACCGCCGGCACGCC GGCGACGACGTTCCTGGTCAAGGACATCCACCCGGGACCCGAGGGCACCG ACGCGCGCGAGCTGACCGCGTTCCAGGGTGCGCTGTTCTTCTCGTCGGAC GGGCCGACGACCGATCGGCACTTGTGGCGGTCGGACGGCACGAGCACCGG CACCGGGCAGTTCGCGCAGCTCGCCGTCGGCCAGAGCAGCGACCCGATGA TGCTCAAGGCGAATGCGGCGGACACGCTGCTGTACTTCTTCGCCGACGAT GGCGTGCACGGAAGCGACCCGTGGGTGACCGACGGGACGCTCGTGGGGAC GAAGACGTTGGGCGACCTCGACGCCGGCAGCCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75652:48..581-

>mRNA_M-pyrifera_M_contig75652.17844.1 ID=mRNA_M-pyrifera_M_contig75652.17844.1|Name=mRNA_M-pyrifera_M_contig75652.17844.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig75652:48..581- (Macrocystis pyrifera P11B4 male)
TACTTCACCGCGTCGACCGTGGACGAAGGCCGTGAGCTGTGGCGTACCGA
CGGCACCGCCGCGGGCACGACGCTGGTCGCGGACGTGAACCCGAACGGCG
ACAGCGACCCCGCGCACCTGACCTCGGTGGGCGGGGTGCTGTACTTCATG
GCCGACGACGGCGTGCACGGGCGCGAGTTGTGGAAGACCGCCGGCACGCC
GGCGACGACGTTCCTGGTCAAGGACATCCACCCGGGACCCGAGGGCACCG
ACGCGCGCGAGCTGACCGCGTTCCAGGGTGCGCTGTTCTTCTCGTCGGAC
GGGCCGACGACCGATCGGCACTTGTGGCGGTCGGACGGCACGAGCACCGG
CACCGGGCAGTTCGCGCAGCTCGCCGTCGGCCAGAGCAGCGACCCGATGA
TGCTCAAGGCGAATGCGGCGGACACGCTGCTGTACTTCTTCGCCGACGAT
GGCGTGCACGGAAGCGACCCGTGGGTGACCGACGGGACGCTCGTGGGGAC
GAAGACGTTGGGCGACCTCGACGCCGGCAGCCCGTACTTCACCGCGTCGA
CCGTGGACGAAGGCCGTGAGCTGTGGCGTACCGACGGCACCGCCGCGGGC
ACGACGCTGGTCGCGGACGTGAACCCGAACGGCGACAGCGACCCCGCGCA
CCTGACCTCGGTGGGCGGGGTGCTGTACTTCATGGCCGACGACGGCGTGC
ACGGGCGCGAGTTGTGGAAGACCGCCGGCACGCCGGCGACGACGTTCCTG
GTCAAGGACATCCACCCGGGACCCGAGGGCACCGACGCGCGCGAGCTGAC
CGCGTTCCAGGGTGCGCTGTTCTTCTCGTCGGACGGGCCGACGACCGATC
GGCACTTGTGGCGGTCGGACGGCACGAGCACCGGCACCGGGCAGTTCGCG
CAGCTCGCCGTCGGCCAGAGCAGCGACCCGATGATGCTCAAGGCGAATGC
GGCGGACACGCTGCTGTACTTCTTCGCCGACGATGGCGTGCACGGAAGCG
ACCCGTGGGTGACCGACGGGACGCTCGTGGGGACGAAGACGTTGGGCGAC
CTCGACGCCGGCAGCCCG
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