mRNA_M-pyrifera_M_contig7561.17832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7561.17832.1
Unique NamemRNA_M-pyrifera_M_contig7561.17832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7561.17832.1 vs. uniprot
Match: D7G761_ECTSI (Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G761_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 1.470e-133
Identity = 197/218 (90.37%), Postives = 206/218 (94.50%), Query Frame = 2 
Query:    2 QVSREGFQCIDEYLENHRNVDRHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSSLHPDRPGGSRYQTESELDETEFVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYNRFRRVM-GGETVFELSDIVTEAWKLPKLLMIKPDHSVAKGSNFVENLRNQGIEASAAKRAAKEAAKEEVTA 652
            QVSREGFQ IDEYLENHRNV+RHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKS+LHPDRPGGSRYQTE  LDET++VRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKY RFRRVM  GE VFELS+IV EAWKLPKLLMIKPDHSVAKGSNFV+NLRNQGIEA+AAK+AAK A KE+  A
Sbjct:  176 QVSREGFQSIDEYLENHRNVERHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDETDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLMIKPDHSVAKGSNFVDNLRNQGIEAAAAKKAAKAAEKEKAEA 393
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BLAST of mRNA_M-pyrifera_M_contig7561.17832.1 vs. uniprot
Match: A0A0G4HAE1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HAE1_9ALVE)

HSP 1 Score: 254 bits (648), Expect = 1.690e-75
Identity = 121/196 (61.73%), Postives = 155/196 (79.08%), Query Frame = 2 
Query:    2 QVSREGFQCIDEYLENHRNVDRHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSSLHPDRPGGSRYQTESELDE--TEFVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYNRFRRVMGGETVFELSDIVTEAWKLPKLLM----IKPDHSVAK-GSNF 568
            QVSREGFQCIDEYL NHR VD+++W+T+P+ E+ KDYELM NRVEW YP ++REFVALD + RP ++LISKS+LHP+RPGGSRYQ   E+D   + FVRAVQYY SKVEP+   KCLL MVTWGEMCD+Y+A+W+N+FN ++FITPK+ RFR  M G+TV+E S+IV  AW + KL      +KPD ++ K G++F
Sbjct:  228 QVSREGFQCIDEYLVNHRKVDQYKWLTRPELESGKDYELMMNRVEWRYPFKSREFVALDTVHRPERVLISKSALHPERPGGSRYQDALEVDPPGSPFVRAVQYYGSKVEPVGPNKCLLYMVTWGEMCDNYSAWWVNQFNKYLFITPKFRRFREAMSGKTVWEESNIVNNAWDILKLKHNMGGLKPDRTILKNGADF 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7561.17832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G761_ECTSI1.470e-13390.37Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A0G4HAE1_9ALVE1.690e-7561.73Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7561contigM-pyrifera_M_contig7561:1565..3103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue1.6e-89
Seed eggNOG ortholog2880.D7G761
Hectar predicted targeting categoryother localisation
EggNOG OGs2DZK2@1,2S73F@2759
Ec32 ortholog descriptionimm downregulated 15
Ec32 orthologEc-01_010920.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1539
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7561.17832.1prot_M-pyrifera_M_contig7561.17832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7561 1665..2219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.8949294-UTR-M-pyrifera_M_contig7561:1564..16641622816653.8949294-UTR-M-pyrifera_M_contig7561:1564..1664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 1565..1664 +
1692278100.677761-UTR-M-pyrifera_M_contig7561:1564..16641692278100.677761-UTR-M-pyrifera_M_contig7561:1564..1664Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 1565..1664 +
1622816653.9207923-UTR-M-pyrifera_M_contig7561:2219..31031622816653.9207923-UTR-M-pyrifera_M_contig7561:2219..3103Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 2220..3103 +
1692278100.703865-UTR-M-pyrifera_M_contig7561:2219..31031692278100.703865-UTR-M-pyrifera_M_contig7561:2219..3103Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7561 2220..3103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.9059865-CDS-M-pyrifera_M_contig7561:1664..22191622816653.9059865-CDS-M-pyrifera_M_contig7561:1664..2219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 1665..2219 +
1692278100.6904154-CDS-M-pyrifera_M_contig7561:1664..22191692278100.6904154-CDS-M-pyrifera_M_contig7561:1664..2219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7561 1665..2219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7561.17832.1

>prot_M-pyrifera_M_contig7561.17832.1 ID=prot_M-pyrifera_M_contig7561.17832.1|Name=mRNA_M-pyrifera_M_contig7561.17832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSSLHPDRPGGSR
YQTESELDETEFVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWI
NKFNAHVFITPKYNRFRRVMGGETVFELSDIVTEAWKLPKLLMIKPDHSV
AKGSNFVENLRNQGIEASAAKRAAKEAAKEEVTA*
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mRNA from alignment at M-pyrifera_M_contig7561:1565..3103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7561.17832.1 ID=mRNA_M-pyrifera_M_contig7561.17832.1|Name=mRNA_M-pyrifera_M_contig7561.17832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at M-pyrifera_M_contig7561:1565..3103+ (Macrocystis pyrifera P11B4 male)
CCAGGTGTCCCGCGAGGGCTTCCAGTGCATTGATGAGTACCTGGAGAACC
ACCGCAACGTCGACCGCCACGAGTGGGTCACCCAGCCCCAGTACGAGAAC
ATGAAAGACTACGAGCTCATGACCAACCGCGTAGAGTGGGCCTACCCTAC
CCAGACGCGCGAGTTCGTAGCCCTCGACATCATCGACCGACCCCGCAAGA
TCCTCATCTCCAAGAGCTCGCTGCACCCCGACCGCCCGGGAGGCAGCCGG
TACCAGACGGAGAGCGAGCTGGACGAGACTGAGTTCGTGCGCGCGGTACA
GTACTACGCGTCGAAGGTCGAGCCCCTCCCCGACGGCAAGTGTCTGCTGC
GGATGGTGACGTGGGGAGAGATGTGCGACAGTTACACGGCGTTCTGGATC
AACAAGTTCAACGCGCACGTGTTCATCACCCCCAAGTACAACCGCTTCCG
CCGCGTGATGGGTGGCGAGACCGTCTTCGAGCTGAGCGACATCGTCACGG
AGGCCTGGAAGCTGCCCAAGCTTCTCATGATCAAGCCCGACCACTCCGTA
GCCAAGGGCTCGAACTTTGTCGAGAACCTTCGCAATCAGGGCATCGAGGC
CTCGGCTGCTAAACGCGCGGCCAAGGAGGCCGCCAAGGAGGAAGTGACTG
CGTAAATGTACGGGTTCGCATTTACAATCGTTTCGTGCGGAATTGCGGTT
TAATTTCCTTTTACCGTCGGGTGTACACTTATCGAGACACGGTCGGGCGG
GTTGGGAAGGCTATAGGGCGTATTGGGCGTTCGATCGCTCTTTTAAGGGG
AGACATCGGGGTGGCAGGCTTCTCGGGTGCTTGTGAGGCGCCTGCCTATA
CTGAACGTGTTATCATTGTCTTTTTTTTTCACCCGTCTAAAGGTAGGTTG
GGAAGTGGTGTTGTAGGCCAAAACCGTTTTCTCTTTTTTCGTTCCCGACG
TTTTCCAACTTGCTTTGTCGTTGCCTTGTCGTTTTAAAGGCCACCTGTCT
AGGGTGGGATCGGAGGTGGGAGAAAGAGAGCTCGGCACTATATGATGGGA
GAGGTTGGGCGGTGTGTATAGGTTTTGCGCCAGTTAGAGTCCAGAAGAAG
GAGGTGTCGACGAAATGATTTGTTGCCTGCAGGTTGGGCTTGGCCAGCCT
GAAGAGAAGATCCTCTGTCGTAAGCGAAGGCTTGGACAACTATTAATACT
GCTACGGTACGGTCTCTTCTGGAGGGTGCTGGAAGGCGATGCAGCAGGCA
AAATTCTAATTCTACCGTCTGGTGTTTCTGTACTTGGATATTTTGCTTGT
TGCCTCGCGGTAGCGGCGGCAATATTGTATGTATATACTCTGTTGACGAT
ATTGCGCCATTTTCTCGATAAAATGCATGTTTCGACTGTGTAGTGTCTGC
GGACACCAGACACCTTTAATGGTTCCTCGCCGTATGTAACCTTCGAGCAG
TATTATTTTCGAAATGTGTGGTCTACATGGACACGACTTGGTGCTTGCTT
GCAATAGAAAGGGAAGGGCACTCTAAAGTATTACGTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7561:1565..3103+

>mRNA_M-pyrifera_M_contig7561.17832.1 ID=mRNA_M-pyrifera_M_contig7561.17832.1|Name=mRNA_M-pyrifera_M_contig7561.17832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig7561:1565..3103+ (Macrocystis pyrifera P11B4 male)
ATGAAAGACTACGAGCTCATGACCAACCGCGTAGAGTGGGCCTACCCTAC
CCAGACGCGCGAGTTCGTAGCCCTCGACATCATCGACCGACCCCGCAAGA
TCCTCATCTCCAAGAGCTCGCTGCACCCCGACCGCCCGGGAGGCAGCCGG
TACCAGACGGAGAGCGAGCTGGACGAGACTGAGTTCGTGCGCGCGGTACA
GTACTACGCGTCGAAGGTCGAGCCCCTCCCCGACGGCAAGTGTCTGCTGC
GGATGGTGACGTGGGGAGAGATGTGCGACAGTTACACGGCGTTCTGGATC
AACAAGTTCAACGCGCACGTGTTCATCACCCCCAAGTACAACCGCTTCCG
CCGCGTGATGGGTGGCGAGACCGTCTTCGAGCTGAGCGACATCGTCACGG
AGGCCTGGAAGCTGCCCAAGCTTCTCATGATCAAGCCCGACCACTCCGTA
GCCAAGGGCTCGAACTTTGTCGAGAACCTTCGCAATCAGGGCATCGAGGC
CTCGGCTGCTAAACGCGCGGCCAAGGAGGCCGCCAAGGAGGAAGTGACTG
CGTAAATGAAAGACTACGAGCTCATGACCAACCGCGTAGAGTGGGCCTAC
CCTACCCAGACGCGCGAGTTCGTAGCCCTCGACATCATCGACCGACCCCG
CAAGATCCTCATCTCCAAGAGCTCGCTGCACCCCGACCGCCCGGGAGGCA
GCCGGTACCAGACGGAGAGCGAGCTGGACGAGACTGAGTTCGTGCGCGCG
GTACAGTACTACGCGTCGAAGGTCGAGCCCCTCCCCGACGGCAAGTGTCT
GCTGCGGATGGTGACGTGGGGAGAGATGTGCGACAGTTACACGGCGTTCT
GGATCAACAAGTTCAACGCGCACGTGTTCATCACCCCCAAGTACAACCGC
TTCCGCCGCGTGATGGGTGGCGAGACCGTCTTCGAGCTGAGCGACATCGT
CACGGAGGCCTGGAAGCTGCCCAAGCTTCTCATGATCAAGCCCGACCACT
CCGTAGCCAAGGGCTCGAACTTTGTCGAGAACCTTCGCAATCAGGGCATC
GAGGCCTCGGCTGCTAAACGCGCGGCCAAGGAGGCCGCCAAGGAGGAAGT
GACTGCGTAA
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