mRNA_M-pyrifera_M_contig75605.17831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75605.17831.1
Unique NamemRNA_M-pyrifera_M_contig75605.17831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: UPI00159C4F1E (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 n=3 Tax=Hippoglossus TaxID=8266 RepID=UPI00159C4F1E)

HSP 1 Score: 86.7 bits (213), Expect = 3.660e-17
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    1 LVRSRRGKPLF------GGDWGRRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRI--VGSRCKESGEFYWNWVVKESFLKCIGIGTGIDLKEVE 336
            L RS +GKP        G D G  W  N+SH G++ V    +G  VG+D+ +   P G K+  E+FR+M   F+  EWG I   GS  ++    Y +W +KESF+K IG G G+DL+ VE
Sbjct:   71 LERSPKGKPYLATPLKVGSDSGGVWSFNLSHQGDYAVLAADQGVQVGVDIMKTTMP-GSKSVPEFFRIMTRQFTAYEWGIIQSAGSEHQQLAAVYRHWALKESFIKAIGTGLGLDLQRVE 189          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: A0A1B3PEJ0_9STRA (Phosphopantetheinyl transferase n=1 Tax=Thraustochytrium sp. ATCC 26185 TaxID=672127 RepID=A0A1B3PEJ0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.090e-16
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 LVRSRRGKPLFGGDWGRRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRI-VGSRCKESG-----EFYWNWVVKESFLKCIGIGTGIDLKEVECWRGEEEG 360
            L R+  GKP         +  N+SHHG+WVV +      VG+D+ +++ P+G ++ EE+F  M + F+  EWGRI +G+     G      FY  W +KE++LK IGIG G  L+       EE G
Sbjct:   97 LKRTEMGKPFVARPDPGTFSFNLSHHGDWVVLMGHPSRAVGVDIMKYEQPKGTQSLEEFFTTMRNSFTPDEWGRIRLGATGNAVGAPHLRRFYKYWSLKEAYLKAIGIGIGFGLQRASFTLDEESG 222          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: A0A2R5GJL9_9STRA (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJL9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.140e-15
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    1 LVRSRRGKPLFGGDWGRRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRI-VGSRCKESGE-----FYWNWVVKESFLKCIGIGTGIDLKEVECWRGEEEG 360
            L R+  GKP         +  N+SHHG+WVV +     CVG+D+ +++ P+G ++ E++F  M   F+  EW RI +G +    G      FY  W +KE++LK IGIG G  L+    +  E  G
Sbjct:   96 LQRTEMGKPFVAQPDPGSFSFNLSHHGDWVVLMAHPSRCVGVDIMKYEDPKGSRSIEDFFTTMRSSFTPGEWERIRLGDKDDALGSAHLQRFYKYWSLKEAYLKAIGIGIGFGLQRASFFLDETSG 221          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: A0A7H0ZVK3_9STRA (Phosphopantetheinyl transferase n=3 Tax=Aurantiochytrium TaxID=420535 RepID=A0A7H0ZVK3_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.550e-15
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 LVRSRRGKPLFGGDWGRRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIVGSRCKESGE---------FYWNWVVKESFLKCIGIGTGIDLK 327
            L RS +GKP        ++  N+SHHG+WVV V  +   +G+DV +++ PRG ++ E++F  M+  F+ +EW  I      E+G+         FY  W +KE+++K IG+G G  L+
Sbjct:   82 LARSDKGKPELVKPNPGKFSFNLSHHGSWVVLVSHKSRVIGVDVVKYEHPRGSRSLEDFFTTMSKSFTPEEWAYIRNG--DETGDLLGDEHLKRFYKEWSLKEAYIKAIGVGIGFGLQ 197          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: S4RRV4_PETMA (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase n=3 Tax=Petromyzon marinus TaxID=7757 RepID=S4RRV4_PETMA)

HSP 1 Score: 74.3 bits (181), Expect = 1.310e-12
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   61 LNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIV--GSRCKESGEFYWNWVVKESFLKCIGIGTGIDLKEVE 336
             NVSH G++ V     G  +G+D+ + Q  RG +T EE+FR+M+  F+  EW  I   GS  ++ G FY +W +KES++K +G+G G++L+ +E
Sbjct:  121 FNVSHQGDFTVLAAELGHTIGVDIMKHQL-RGRQTTEEFFRLMSRQFTPLEWRTIRSGGSDWEKLGLFYRHWCLKESYVKGVGVGLGLNLQRIE 213          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: UPI0013F25C0E (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F25C0E)

HSP 1 Score: 73.6 bits (179), Expect = 1.980e-12
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = 1
Query:    1 LVRSRRGKPLFGGDWGRRWFLNVSHHGNW-VVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIVGS-----RCKESGEFYWNWVVKESFLKCIGIGTGIDLKEVECWRGEEEGGGECGKEWRVTQNALP----SPSTIVRSFLLDSQHPCSITL 471
             +R    KPL   + G   F NVSH G++ V+   +R   +G+DV   ++  G K+  E+FR+MN  FS  EWG I GS       ++   F  +W +KES++K +G+G  +DL+ ++     E       K+   T   L       + +    LLDS+H  ++ L
Sbjct:   82 FIRDEHNKPLLKDNAGAISF-NVSHQGSYAVLAGEIRDVKLGVDVMALEYTGG-KSISEFFRIMNRNFSAAEWGEIKGSAPGKSEMEQISMFCRHWALKESYVKALGVGIVVDLRNIDFRTNSE-----LSKDSVTTDTVLYVDDIKQNWLFEETLLDSRHCVAVAL 241          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: UPI001CF1EF4B (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like isoform X1 n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1EF4B)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-11
Identity = 49/153 (32.03%), Postives = 70/153 (45.75%), Query Frame = 1
Query:    1 LVRSRRGKPLFGGDWG----RRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIVGSR--CKESGEFYWNWVVKESFLKCIGIGTGIDLKEVECWRGEEEGGGECGKEWRVTQNALPSPSTIVRSFLL 441
            L R+ +GKP    +      R +  N+SH G++ V        VG+DV +  +P G  T   +F  M   F+  EW  I       K+   FY +W +KES++K IG G GIDL+ VE               ++V    +P P TIVR   L
Sbjct:   76 LKRTTKGKPYLANEDIESPLRNFSFNISHQGDFTVLAAQPHVAVGVDVMKTVYPSGSSTVTSFFHTMRKQFTPDEWQTIKSQEGEWKQLEIFYRHWCLKESYVKAIGTGIGIDLQAVE---------------FKVNTIEIP-PQTIVRDTQL 212          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: UPI00077AFD0B (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AFD0B)

HSP 1 Score: 68.6 bits (166), Expect = 4.990e-11
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   49 RRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIVGSR--CKESGEFYWNWVVKESFLKCIGIGTGIDLKEVE 336
            R +  N+SH G++ V        VG+DV +  +P G  T   +F  M   F+  EW  I       K+   FY +W +KES++K IG G GIDL+ VE
Sbjct:   77 RNFSFNISHQGDFTVLAAQPHVAVGVDVMKTVYPSGSSTVTSFFHTMRKQFTPDEWQTIKSQEGEWKQLEIFYRHWCLKESYVKAIGTGIGIDLQAVE 174          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: A0A7S4IBY9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IBY9_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 3.320e-10
Identity = 41/123 (33.33%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 LVRSRRGKP-LFGGDWGRRWFL---NVSHHGNWVVGVVVRGA------CVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWG--RIVGSRCKESGEFYWNWVVKESFLKCIGIGTGIDLKEV 333
            L R+ + KP L   +  R+ F    NVS  G++VV   + G       C+G+DV + +     K +E++F  +++ F+  EW   R   S+ K+  +FY  W +KES++K IGIG G+DL+ +
Sbjct:   76 LKRTSKWKPYLSRSEESRKQFFIDFNVSTAGDYVVLAGIAGETSLPQYCIGVDVMKIEIRGKDKDQEKFFESLSNGFTSAEWEDIRSPDSKAKQLQKFYERWTLKESYIKAIGIGLGLDLQTI 198          
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Match: A0A7R9HJW8_9NEOP (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase n=2 Tax=Timema TaxID=61471 RepID=A0A7R9HJW8_9NEOP)

HSP 1 Score: 66.2 bits (160), Expect = 5.980e-10
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   61 LNVSHHGNW-VVGVVVRGACVGIDVGRFQWPRGVKTEEEYFRMMNHCFSGKEWGRIVG----SRCKESGEFYWNWVVKESFLKCIGIGTGIDLKEV 333
             NVSHHG++ V+   V    +GIDV + ++  G K+  E+FR+M   FS +EW  I G    S  K+   F  +W +KES++K +G+G  +DL+ +
Sbjct:   88 FNVSHHGDYAVLAGEVGNVQLGIDVMKIEYTGG-KSLSEFFRLMTRHFSMQEWNTIRGVHGTSESKQLVMFIRHWCLKESYVKALGVGITVDLRNI 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75605.17831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00159C4F1E3.660e-1740.00L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
A0A1B3PEJ0_9STRA1.090e-1636.51Phosphopantetheinyl transferase n=1 Tax=Thraustoch... [more]
A0A2R5GJL9_9STRA1.140e-1534.92L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
A0A7H0ZVK3_9STRA4.550e-1534.75Phosphopantetheinyl transferase n=3 Tax=Aurantioch... [more]
S4RRV4_PETMA1.310e-1239.36L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
UPI0013F25C0E1.980e-1230.54L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
UPI001CF1EF4B1.420e-1132.03L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
UPI00077AFD0B4.990e-1136.73L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
A0A7S4IBY9_9EUKA3.320e-1033.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7R9HJW8_9NEOP5.980e-1037.50L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75605contigM-pyrifera_M_contig75605:106..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score86.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog144197.XP_008299882.1
Preferred nameAASDHPPT
KEGG rclassRC00002
KEGG koko:K06133
KEGG ReactionR01625
KEGG Pathwayko00770,map00770
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0015939,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0032787,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0051186,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.dehydrogenase-phosphopantetheinyl transferase
EggNOG OGs39R6M@33154,3BIEE@33208,3CWER@33213,482C8@7711,495DW@7742,49WNC@7898,COG2091@1,KOG0945@2759
COG Functional cat.EH
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.7798326-CDS-M-pyrifera_M_contig75605:105..3581622816653.7798326-CDS-M-pyrifera_M_contig75605:105..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75605 106..358 +
1692278100.60565-CDS-M-pyrifera_M_contig75605:105..3581692278100.60565-CDS-M-pyrifera_M_contig75605:105..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75605 106..358 +
1622816653.7901857-CDS-M-pyrifera_M_contig75605:448..7231622816653.7901857-CDS-M-pyrifera_M_contig75605:448..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75605 449..723 +
1692278100.61802-CDS-M-pyrifera_M_contig75605:448..7231692278100.61802-CDS-M-pyrifera_M_contig75605:448..723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75605 449..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75605.17831.1prot_M-pyrifera_M_contig75605.17831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75605 106..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75605.17831.1

>prot_M-pyrifera_M_contig75605.17831.1 ID=prot_M-pyrifera_M_contig75605.17831.1|Name=mRNA_M-pyrifera_M_contig75605.17831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
LVRSRRGKPLFGGDWGRRWFLNVSHHGNWVVGVVVRGACVGIDVGRFQWP
RGVKTEEEYFRMMNHCFSGKEWGRIVGSRCKESGEFYWNWVVKESFLKCI
GIGTGIDLKEVECWRGEEEGGGECGKEWRVTQNALPSPSTIVRSFLLDSQ
HPCSITLSPPSLSIDCPHSIPSPPPS
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mRNA from alignment at M-pyrifera_M_contig75605:106..723+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75605.17831.1 ID=mRNA_M-pyrifera_M_contig75605.17831.1|Name=mRNA_M-pyrifera_M_contig75605.17831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig75605:106..723+ (Macrocystis pyrifera P11B4 male)
TTGGTGCGATCACGCAGAGGGAAGCCATTGTTTGGTGGGGATTGGGGAAG GAGGTGGTTTTTGAATGTTTCGCATCATGGAAATTGGGTAGTTGGTGTTG TAGTACGTGGTGCTTGTGTTGGGATAGATGTGGGGAGGTTTCAATGGCCG AGAGGGGTGAAAACGGAGGAGGAATACTTTCGCATGATGAACCATTGTTT TAGTGGCAAGGAATGGGGAAGGATTGTGGGGAGTAGATGTAAAGAGAGTG GAGGTGGTGAGAGGAGGGATTTGTCGTCATCACCTCCACCCCCTCATCCT GGTATGCCATTTACACCCCCCTCTCGGTTTCCCAAGATGGAAGAGTTTTA TTGGAATTGGGTTGTGAAGGAGAGTTTCCTAAAGTGTATTGGGATTGGAA CTGGGATTGATTTAAAGGAAGTAGAATGTTGGAGAGGGGAGGAAGAAGGT GGGGGTGAGTGTGGGAAGGAATGGAGGGTGACTCAAAACGCCCTTCCGTC TCCTTCCACAATTGTGCGATCGTTTTTGCTTGATTCGCAACATCCATGTT CCATCACCCTTTCCCCACCTTCTTTATCCATTGATTGTCCTCATTCGATC CCTTCCCCTCCGCCATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75605:106..723+

>mRNA_M-pyrifera_M_contig75605.17831.1 ID=mRNA_M-pyrifera_M_contig75605.17831.1|Name=mRNA_M-pyrifera_M_contig75605.17831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig75605:106..723+ (Macrocystis pyrifera P11B4 male)
TTGGTGCGATCACGCAGAGGGAAGCCATTGTTTGGTGGGGATTGGGGAAG
GAGGTGGTTTTTGAATGTTTCGCATCATGGAAATTGGGTAGTTGGTGTTG
TAGTACGTGGTGCTTGTGTTGGGATAGATGTGGGGAGGTTTCAATGGCCG
AGAGGGGTGAAAACGGAGGAGGAATACTTTCGCATGATGAACCATTGTTT
TAGTGGCAAGGAATGGGGAAGGATTGTGGGGAGTAGATGTAAAGAGAGTG
GAGTTGGTGCGATCACGCAGAGGGAAGCCATTGTTTGGTGGGGATTGGGG
AAGGAGGTGGTTTTTGAATGTTTCGCATCATGGAAATTGGGTAGTTGGTG
TTGTAGTACGTGGTGCTTGTGTTGGGATAGATGTGGGGAGGTTTCAATGG
CCGAGAGGGGTGAAAACGGAGGAGGAATACTTTCGCATGATGAACCATTG
TTTTAGTGGCAAGGAATGGGGAAGGATTGTGGGGAGTAGATGTAAAGAGA
GTGGAGAGTTTTATTGGAATTGGGTTGTGAAGGAGAGTTTCCTAAAGTGT
ATTGGGATTGGAACTGGGATTGATTTAAAGGAAGTAGAATGTTGGAGAGG
GGAGGAAGAAGGTGGGGGTGAGTGTGGGAAGGAATGGAGGGTGACTCAAA
ACGCCCTTCCGTCTCCTTCCACAATTGTGCGATCGTTTTTGCTTGATTCG
CAACATCCATGTTCCATCACCCTTTCCCCACCTTCTTTATCCATTGATTG
TCCTCATTCGATCCCTTCCCCTCCGCCATCTAGTTTTATTGGAATTGGGT
TGTGAAGGAGAGTTTCCTAAAGTGTATTGGGATTGGAACTGGGATTGATT
TAAAGGAAGTAGAATGTTGGAGAGGGGAGGAAGAAGGTGGGGGTGAGTGT
GGGAAGGAATGGAGGGTGACTCAAAACGCCCTTCCGTCTCCTTCCACAAT
TGTGCGATCGTTTTTGCTTGATTCGCAACATCCATGTTCCATCACCCTTT
CCCCACCTTCTTTATCCATTGATTGTCCTCATTCGATCCCTTCCCCTCCG
CCATCT
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