mRNA_M-pyrifera_M_contig75565.17825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75565.17825.1
Unique NamemRNA_M-pyrifera_M_contig75565.17825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A0L0G0V6_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G0V6_9EUKA)

HSP 1 Score: 140 bits (352), Expect = 1.510e-39
Identity = 70/155 (45.16%), Postives = 104/155 (67.10%), Query Frame = 1 
Query:    1 MVSGRKYWLDKLFVGHAVVSLVVGLIGAVRPNAFEFFLVAHDSDSLGAL--HPDGEG-KVANLFVRLYALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQPIAVFQGLGK 456
            MVSG K  LD LF+ HA +S ++G    + P+  E FL+  D++++  L  H  G+  K+ +L +RLY  L+L QG +V  AR + D+ MR+ +++ YA+ F L+A+ALLRAQ TEGG+++  NWINI +F  L+  YAWF +VQPIA+F+ L K
Sbjct:    2 MVSGAKRTLDNLFLLHASISCIIGATLFIFPHFAELFLIHQDNETVIGLTDHTAGDAQKITHLVLRLYGALVLGQGHLVLMARDVADAPMRKVIVRVYAITFGLTAVALLRAQTTEGGSLNGYNWINIVVFAWLSAFYAWFVLVQPIAIFESLDK 156
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A813KVQ1_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KVQ1_POLGL)

HSP 1 Score: 114 bits (285), Expect = 7.350e-29
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = 1 
Query:    4 VSGRKYWLDKLFVGHAVVSLVVGLIGAVRPNAFEFFLVAHDSDSLGALHPDGEGKVANLFVRLYALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQPIAVFQGLGKG 459
            ++G+K  L+ L + H VV+   G +  + P+ F FFL      S      +G+ K+ ++ +R+Y  LI+ Q  IVW+ R+ +D  +RR++++ Y V F+L+ LALLRAQ+T+    H +N +N+ LF  LA  Y WF    P  VF+GLGKG
Sbjct:   55 IAGQKTRLNYLLLAHTVVAATFGTVAFLLPHLFGFFLGEEWHGSWRFNPEEGQVKITHVVIRIYGALIVGQSLIVWEVRKTDDGVVRRAIVRAYFVVFTLTTLALLRAQLTDS-TWHVANLLNLLLFGALAGFYGWFYWFNPPPVFEGLGKG 205
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A813CJV7_9DINO (ML4 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CJV7_9DINO)

HSP 1 Score: 111 bits (277), Expect = 1.280e-28
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   91 PNAFEFFLVAHDSDSLGALHPDGEGKVANLFVRLYALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQPIAVFQGLGK 456
            P+ F FFL      +      DG+ K+ ++ +RLY  LIL Q ++ W A++ +D R+R + ++ YAV F L+ LALLRAQ+T+    H  NW+N+ LF  LA  Y WF++VQP AVF+GLGK
Sbjct:    3 PHLFGFFLGEEWHGTFRWNPDDGQVKITHVVIRLYGALILGQSFLTWAAKQTDDGRVRLAAVRAYAVVFGLTTLALLRAQLTDS-TWHVLNWLNLLLFACLAAFYGWFSLVQPPAVFEGLGK 123
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A813GTW5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GTW5_POLGL)

HSP 1 Score: 75.5 bits (184), Expect = 5.500e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  223 IVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQPIAVFQGLGKG 459
            +VW+ R+ +D  +RR++++ Y V F+L+ LALLRAQ+T+    H +N +N+ LF  LA  Y WF    P  VF+GLGKG
Sbjct:  114 MVWEVRKTDDGVVRRAIVRAYFVVFTLTTLALLRAQLTDS-TWHVANLLNLLLFGALAGFYGWFYWFNPPPVFEGLGKG 191
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A482RQH7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQH7_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 1.120e-10
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  193 YALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYA 408
            Y +   LQ WIVW+AR   D+ MRR L+Q YAV F+L+ALALLRAQ+TE     A    N  +  L  CG A
Sbjct:   27 YPVSARLQAWIVWKARAAADANMRRCLVQAYAVAFALTALALLRAQLTES----ADTDFNSYVCRLRVCGCA 94
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BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Match: A0A536GLU2_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536GLU2_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-5
Identity = 34/123 (27.64%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   61 LVVGLIGAVRPNAFEFFLVAHDSDSLGALHPDGEGKVANLFVRLYALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFSLSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQP 429
            +V  ++GA    AF   +VA  S  L +++     K   L  +L+  L++    + W AR + D   R++++ G  V  ++  + +L  Q+   G  +A  W ++A++LLLA G+A+  ++QP
Sbjct:    8 VVAAIVGAAFGVAF---VVA--SGPLLSVYGITLDKAGTLVAQLFGALLIGLAVLNWFARNVTDPEARQAVVYGNLVGDAIGFVVILIGQLA--GIANAVGWSSVAIYLLLALGFAYVQVMQP 123
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75565.17825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0L0G0V6_9EUKA1.510e-3945.16Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A813KVQ1_POLGL7.350e-2938.16Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813CJV7_9DINO1.280e-2844.26ML4 protein n=1 Tax=Symbiodinium necroappetens Tax... [more]
A0A813GTW5_POLGL5.500e-1445.57Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A482RQH7_9ARCH1.120e-1050.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A536GLU2_9CHLR1.230e-527.64Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75565contigM-pyrifera_M_contig75565:24..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog72019.SARC_05231T0
Hectar predicted targeting categorysignal peptide
EggNOG OGs2AWIT@1,2RZYW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size468
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.4514847-CDS-M-pyrifera_M_contig75565:23..4911622816653.4514847-CDS-M-pyrifera_M_contig75565:23..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75565 24..491 +
1692278100.4245305-CDS-M-pyrifera_M_contig75565:23..4911692278100.4245305-CDS-M-pyrifera_M_contig75565:23..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75565 24..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75565.17825.1prot_M-pyrifera_M_contig75565.17825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75565 24..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75565.17825.1

>prot_M-pyrifera_M_contig75565.17825.1 ID=prot_M-pyrifera_M_contig75565.17825.1|Name=mRNA_M-pyrifera_M_contig75565.17825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MVSGRKYWLDKLFVGHAVVSLVVGLIGAVRPNAFEFFLVAHDSDSLGALH
PDGEGKVANLFVRLYALLILLQGWIVWQARRIEDSRMRRSLIQGYAVFFS
LSALALLRAQVTEGGAMHASNWINIALFLLLACGYAWFAIVQPIAVFQGL
GKGGA*
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mRNA from alignment at M-pyrifera_M_contig75565:24..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75565.17825.1 ID=mRNA_M-pyrifera_M_contig75565.17825.1|Name=mRNA_M-pyrifera_M_contig75565.17825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig75565:24..491+ (Macrocystis pyrifera P11B4 male)
ATGGTGAGTGGTCGGAAGTACTGGCTGGACAAGCTGTTTGTGGGACATGC
TGTGGTGTCGTTGGTGGTGGGATTGATTGGCGCGGTGCGTCCGAATGCGT
TCGAGTTCTTTTTGGTGGCGCATGATTCCGATTCTCTGGGAGCACTGCAT
CCAGACGGGGAAGGGAAGGTGGCCAACTTGTTCGTGCGTCTGTACGCGCT
CTTGATCCTGCTGCAGGGTTGGATCGTGTGGCAAGCGAGGCGCATTGAAG
ACTCTCGCATGCGTCGATCTCTCATCCAAGGATACGCTGTCTTCTTCTCC
CTCTCGGCACTCGCTCTGCTCCGGGCCCAGGTCACAGAGGGAGGCGCCAT
GCACGCCTCCAACTGGATCAACATCGCCCTCTTCCTCCTCCTCGCATGCG
GATACGCCTGGTTCGCGATAGTCCAACCCATCGCCGTTTTCCAGGGTCTA
GGCAAAGGAGGCGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75565:24..491+

>mRNA_M-pyrifera_M_contig75565.17825.1 ID=mRNA_M-pyrifera_M_contig75565.17825.1|Name=mRNA_M-pyrifera_M_contig75565.17825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig75565:24..491+ (Macrocystis pyrifera P11B4 male)
ATGGTGAGTGGTCGGAAGTACTGGCTGGACAAGCTGTTTGTGGGACATGC
TGTGGTGTCGTTGGTGGTGGGATTGATTGGCGCGGTGCGTCCGAATGCGT
TCGAGTTCTTTTTGGTGGCGCATGATTCCGATTCTCTGGGAGCACTGCAT
CCAGACGGGGAAGGGAAGGTGGCCAACTTGTTCGTGCGTCTGTACGCGCT
CTTGATCCTGCTGCAGGGTTGGATCGTGTGGCAAGCGAGGCGCATTGAAG
ACTCTCGCATGCGTCGATCTCTCATCCAAGGATACGCTGTCTTCTTCTCC
CTCTCGGCACTCGCTCTGCTCCGGGCCCAGGTCACAGAGGGAGGCGCCAT
GCACGCCTCCAACTGGATCAACATCGCCCTCTTCCTCCTCCTCGCATGCG
GATACGCCTGGTTCGCGATAGTCCAACCCATCGCCGTTTTCCAGGGTCTA
GGCAAAGGAGGCGCGTGAATGGTGAGTGGTCGGAAGTACTGGCTGGACAA
GCTGTTTGTGGGACATGCTGTGGTGTCGTTGGTGGTGGGATTGATTGGCG
CGGTGCGTCCGAATGCGTTCGAGTTCTTTTTGGTGGCGCATGATTCCGAT
TCTCTGGGAGCACTGCATCCAGACGGGGAAGGGAAGGTGGCCAACTTGTT
CGTGCGTCTGTACGCGCTCTTGATCCTGCTGCAGGGTTGGATCGTGTGGC
AAGCGAGGCGCATTGAAGACTCTCGCATGCGTCGATCTCTCATCCAAGGA
TACGCTGTCTTCTTCTCCCTCTCGGCACTCGCTCTGCTCCGGGCCCAGGT
CACAGAGGGAGGCGCCATGCACGCCTCCAACTGGATCAACATCGCCCTCT
TCCTCCTCCTCGCATGCGGATACGCCTGGTTCGCGATAGTCCAACCCATC
GCCGTTTTCCAGGGTCTAGGCAAAGGAGGCGCGTGA
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