mRNA_M-pyrifera_M_contig75531.17817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75531.17817.1
Unique NamemRNA_M-pyrifera_M_contig75531.17817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75531.17817.1 vs. uniprot
Match: A0A5A8CHP4_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHP4_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 1.690e-7
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   25 VADVSRGGTGTKKRVTWDFAFGLSEAEVHSVSLTHSVLSGKKVVQVDGGVVLRTDHVEAGDVHLRVRVAAVECVVFISSASEYGLYIAGTDFEKLPK 315
            +AD+S+G   +K RV W F F     E H ++LTHSVLSGKK ++ +G  V  +     G+   R+ +        I+S + Y L++ G  FE+LP+
Sbjct:   13 IADISKGKNQSKWRVVWRFCFEGIPRE-HVITLTHSVLSGKKRIEHNGRPVFSSTGRVVGEFSHRMLLKDHRLGAVITSTNAYELFVDGRRFEELPE 108
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BLAST of mRNA_M-pyrifera_M_contig75531.17817.1 vs. uniprot
Match: A0A5A8C1Z0_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C1Z0_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 1.730e-7
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   25 VADVSRGGTGTKKRVTWDFAFGLSEAEVHSVSLTHSVLSGKKVVQVDGGVVLRTDHVEAGDVHLRVRVAAVECVVFISSASEYGLYIAGTDFEKLPK 315
            +AD+S+G   +K RV W F F     E H ++LTHSVLSGKK ++ +G  V  +     G+   R+ +        I+S + Y L++ G  FE+LP+
Sbjct:   13 IADISKGKNQSKWRVVWRFCFEGIPRE-HVITLTHSVLSGKKRIEHNGRPVFSSTGRVVGEFSHRMLLKDHRLGAVITSTNAYELFVDGRRFEELPE 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig75531.17817.1 vs. uniprot
Match: A0A5A8DIQ3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DIQ3_CAFRO)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-7
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   25 VADVSRGGTGTKKRVTWDFAFGLSEAEVHSVSLTHSVLSGKKVVQVDGGVVLRTDHVEAGDVHLRVRVAAVECVVFISSASEYGLYIAGTDFEKLPK 315
            +AD+S+G   +K RV W F F     E H ++LTHSVLSGKK ++ +G  V  +     G+   R+ +        I+S + Y L++ G  FE+LP+
Sbjct:   13 IADISKGKNQSKWRVVWRFCFEGIPRE-HVITLTHSVLSGKKRIEHNGRPVFSSTGRVVGEFSHRMLLKDHRLGAVITSTNAYELFVDGRRFEELPE 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75531.17817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8CHP4_CAFRO1.690e-736.08Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8C1Z0_CAFRO1.730e-736.08Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A5A8DIQ3_CAFRO1.770e-736.08Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75531contigM-pyrifera_M_contig75531:715..1029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.1318908-CDS-M-pyrifera_M_contig75531:714..10291622816653.1318908-CDS-M-pyrifera_M_contig75531:714..1029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75531 715..1029 +
1692278100.2972033-CDS-M-pyrifera_M_contig75531:714..10291692278100.2972033-CDS-M-pyrifera_M_contig75531:714..1029Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75531 715..1029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75531.17817.1prot_M-pyrifera_M_contig75531.17817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75531 715..1029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75531.17817.1

>prot_M-pyrifera_M_contig75531.17817.1 ID=prot_M-pyrifera_M_contig75531.17817.1|Name=mRNA_M-pyrifera_M_contig75531.17817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
RAVALKVLVADVSRGGTGTKKRVTWDFAFGLSEAEVHSVSLTHSVLSGKK
VVQVDGGVVLRTDHVEAGDVHLRVRVAAVECVVFISSASEYGLYIAGTDF
EKLPK
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mRNA from alignment at M-pyrifera_M_contig75531:715..1029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75531.17817.1 ID=mRNA_M-pyrifera_M_contig75531.17817.1|Name=mRNA_M-pyrifera_M_contig75531.17817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig75531:715..1029+ (Macrocystis pyrifera P11B4 male)
CGTGCGGTGGCGCTCAAGGTGCTGGTGGCTGACGTGTCACGCGGCGGCAC
GGGCACGAAGAAGCGTGTGACGTGGGACTTTGCGTTCGGGCTCTCCGAGG
CGGAGGTGCATTCGGTGTCTCTGACGCACAGCGTTCTGAGCGGGAAGAAG
GTGGTGCAGGTGGACGGCGGGGTGGTGTTACGCACCGACCACGTGGAGGC
GGGGGATGTGCACCTGCGGGTGCGTGTGGCGGCCGTAGAATGCGTCGTCT
TCATCTCCTCCGCCTCAGAATACGGCCTCTACATCGCCGGCACGGATTTC
GAAAAACTCCCGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75531:715..1029+

>mRNA_M-pyrifera_M_contig75531.17817.1 ID=mRNA_M-pyrifera_M_contig75531.17817.1|Name=mRNA_M-pyrifera_M_contig75531.17817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig75531:715..1029+ (Macrocystis pyrifera P11B4 male)
CGTGCGGTGGCGCTCAAGGTGCTGGTGGCTGACGTGTCACGCGGCGGCAC
GGGCACGAAGAAGCGTGTGACGTGGGACTTTGCGTTCGGGCTCTCCGAGG
CGGAGGTGCATTCGGTGTCTCTGACGCACAGCGTTCTGAGCGGGAAGAAG
GTGGTGCAGGTGGACGGCGGGGTGGTGTTACGCACCGACCACGTGGAGGC
GGGGGATGTGCACCTGCGGGTGCGTGTGGCGGCCGTAGAATGCGTCGTCT
TCATCTCCTCCGCCTCAGAATACGGCCTCTACATCGCCGGCACGGATTTC
GAAAAACTCCCGAAACGTGCGGTGGCGCTCAAGGTGCTGGTGGCTGACGT
GTCACGCGGCGGCACGGGCACGAAGAAGCGTGTGACGTGGGACTTTGCGT
TCGGGCTCTCCGAGGCGGAGGTGCATTCGGTGTCTCTGACGCACAGCGTT
CTGAGCGGGAAGAAGGTGGTGCAGGTGGACGGCGGGGTGGTGTTACGCAC
CGACCACGTGGAGGCGGGGGATGTGCACCTGCGGGTGCGTGTGGCGGCCG
TAGAATGCGTCGTCTTCATCTCCTCCGCCTCAGAATACGGCCTCTACATC
GCCGGCACGGATTTCGAAAAACTCCCGAAA
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