mRNA_M-pyrifera_M_contig75526.17816.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75526.17816.1
Unique NamemRNA_M-pyrifera_M_contig75526.17816.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A6C0U2L9_9GAMM (Chaperonin GroEL n=15 Tax=Halieaceae TaxID=1706372 RepID=A0A6C0U2L9_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 3.590e-22
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            MENPLRQIVANAGGE SVVLDKVRQGKGNYGYNA TGEYGDMIE+GILD
Sbjct:  447 MENPLRQIVANAGGEASVVLDKVRQGKGNYGYNATTGEYGDMIELGILD 495
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: C6M1F4_NEISI (Uncharacterized protein n=2 Tax=Neisseria TaxID=482 RepID=C6M1F4_NEISI)

HSP 1 Score: 88.6 bits (218), Expect = 2.320e-21
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            +E+PLRQIVANAGGEPSVV++KV +GKGNYGYNA +GEYGDMIEMG+LD
Sbjct:   37 IESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLD 85
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A522RQG3_9GAMM (Molecular chaperone GroEL (Fragment) n=1 Tax=Rhodanobacteraceae bacterium TaxID=2052182 RepID=A0A522RQG3_9GAMM)

HSP 1 Score: 89.4 bits (220), Expect = 3.460e-21
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            ME PLR+IVANAG EPSVVL+KV +GKGNYGYNAATGEYGDM+EMGILD
Sbjct:   75 MEAPLREIVANAGEEPSVVLNKVAEGKGNYGYNAATGEYGDMVEMGILD 123
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A7V8ZRI5_9BURK (Chaperonin GroEL n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZRI5_9BURK)

HSP 1 Score: 87.4 bits (215), Expect = 4.210e-21
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            +E PLRQIVANAG EPSVVL+KV +GKGN+GYNAATGEYGD++EMG+LD
Sbjct:   13 LEEPLRQIVANAGDEPSVVLNKVAEGKGNFGYNAATGEYGDLVEMGVLD 61
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A2A4MVG1_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A4MVG1_9GAMM)

HSP 1 Score: 87.4 bits (215), Expect = 6.600e-21
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            ME PLRQIV+NAG E SVVL+KV++GKGN+GYNAATGEYGDMIEMGILD
Sbjct:   31 MEEPLRQIVSNAGEEASVVLEKVKEGKGNFGYNAATGEYGDMIEMGILD 79
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A645GKV3_9ZZZZ (60 kDa chaperonin n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645GKV3_9ZZZZ)

HSP 1 Score: 87.4 bits (215), Expect = 1.310e-20
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            +E PLR+IVANAG EPSVV+DKV +GKGNYGYNAATGEYGDM+EMG+LD
Sbjct:   59 IEAPLREIVANAGDEPSVVVDKVVRGKGNYGYNAATGEYGDMVEMGVLD 107
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A4D6BPZ9_PSESP (Heat shock protein 60 (Fragment) n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A4D6BPZ9_PSESP)

HSP 1 Score: 85.5 bits (210), Expect = 1.570e-20
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            +E PLRQIVAN+G EPSVV+DKV+QG GN+GYNAATG YGDMIEMGILD
Sbjct:   30 VEAPLRQIVANSGDEPSVVVDKVKQGSGNFGYNAATGVYGDMIEMGILD 78
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A2E1N8Z7_9GAMM (60 kDa chaperonin (Fragment) n=2 Tax=Cellvibrionales TaxID=1706369 RepID=A0A2E1N8Z7_9GAMM)

HSP 1 Score: 89.0 bits (219), Expect = 1.700e-20
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            ME PLRQIV NAG E SVVLDKVRQG+GN+GYNAATGEYGDMIEMGILD
Sbjct:  140 MEGPLRQIVDNAGDEASVVLDKVRQGEGNFGYNAATGEYGDMIEMGILD 188
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: A0A7Y5D4Y3_9GAMM (Chaperonin GroEL n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A7Y5D4Y3_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 3.250e-20
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            ME PLRQIVANAG EPSVV ++V +GKGN+GYNAATG+YGDMIEMGILD
Sbjct:   13 MEEPLRQIVANAGDEPSVVFNEVFKGKGNFGYNAATGQYGDMIEMGILD 61
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BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Match: UPI0001FBFBFE (chaperonin GroEL n=1 Tax=Neisseria meningitidis TaxID=487 RepID=UPI0001FBFBFE)

HSP 1 Score: 88.6 bits (218), Expect = 3.360e-20
Identity = 40/49 (81.63%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD 147
            +E+PLRQIVANAGGEPSVV++KV +GKGNYGYNA +GEYGDMIEMG+LD
Sbjct:  159 VESPLRQIVANAGGEPSVVVNKVLEGKGNYGYNAGSGEYGDMIEMGVLD 207
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75526.17816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0U2L9_9GAMM3.590e-2293.88Chaperonin GroEL n=15 Tax=Halieaceae TaxID=1706372... [more]
C6M1F4_NEISI2.320e-2181.63Uncharacterized protein n=2 Tax=Neisseria TaxID=48... [more]
A0A522RQG3_9GAMM3.460e-2185.71Molecular chaperone GroEL (Fragment) n=1 Tax=Rhoda... [more]
A0A7V8ZRI5_9BURK4.210e-2179.59Chaperonin GroEL n=1 Tax=Burkholderiales bacterium... [more]
A0A2A4MVG1_9GAMM6.600e-2183.67Uncharacterized protein (Fragment) n=1 Tax=SAR86 c... [more]
A0A645GKV3_9ZZZZ1.310e-2081.6360 kDa chaperonin n=1 Tax=bioreactor metagenome Ta... [more]
A0A4D6BPZ9_PSESP1.570e-2081.63Heat shock protein 60 (Fragment) n=1 Tax=Pseudomon... [more]
A0A2E1N8Z7_9GAMM1.700e-2087.7660 kDa chaperonin (Fragment) n=2 Tax=Cellvibrional... [more]
A0A7Y5D4Y3_9GAMM3.250e-2081.63Chaperonin GroEL n=1 Tax=Methylococcaceae bacteriu... [more]
UPI0001FBFBFE3.360e-2081.63chaperonin GroEL n=1 Tax=Neisseria meningitidis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75526contigM-pyrifera_M_contig75526:815..961 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.1
Seed ortholog evalue7.8e-20
Seed eggNOG ortholog1121937.AUHJ01000006_gene2540
Preferred namegroL
KEGG koko:K04077
KEGG Pathwayko03018,ko04212,ko04940,ko05134,ko05152,map03018,map04212,map04940,map05134,map05152
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009628,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0010646,GO:0010647,GO:0016032,GO:0016462,GO:0016465,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018995,GO:0019058,GO:0019068,GO:0020003,GO:0023051,GO:0023056,GO:0030430,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033643,GO:0033646,GO:0033655,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043230,GO:0043656,GO:0043657,GO:0043900,GO:0043903,GO:0044183,GO:0044215,GO:0044216,GO:0044217,GO:0044403,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051704,GO:0061077,GO:0065007,GO:0065010,GO:0097159,GO:0097367,GO:0101031,GO:1901222,GO:1901224,GO:1901265,GO:1901363,GO:1902531,GO:1902533,GO:1990220,GO:2000535
EggNOG free text desc.Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions
EggNOG OGs1MURR@1224,1RMTB@1236,4647Z@72275,COG0459@1,COG0459@2
COG Functional cat.O
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03110,ko04147
Exons1
Model size147
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.1009455-CDS-M-pyrifera_M_contig75526:814..9611622816653.1009455-CDS-M-pyrifera_M_contig75526:814..961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75526 815..961 -
1692278100.2868245-CDS-M-pyrifera_M_contig75526:814..9611692278100.2868245-CDS-M-pyrifera_M_contig75526:814..961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75526 815..961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75526.17816.1prot_M-pyrifera_M_contig75526.17816.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75526 815..961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75526.17816.1

>prot_M-pyrifera_M_contig75526.17816.1 ID=prot_M-pyrifera_M_contig75526.17816.1|Name=mRNA_M-pyrifera_M_contig75526.17816.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MENPLRQIVANAGGEPSVVLDKVRQGKGNYGYNAATGEYGDMIEMGILD
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mRNA from alignment at M-pyrifera_M_contig75526:815..961-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75526.17816.1 ID=mRNA_M-pyrifera_M_contig75526.17816.1|Name=mRNA_M-pyrifera_M_contig75526.17816.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig75526:815..961- (Macrocystis pyrifera P11B4 male)
ATGGAAAACCCCCTGCGCCAGATCGTAGCAAACGCCGGTGGCGAACCTTC
GGTAGTGCTGGACAAAGTGCGCCAGGGCAAGGGCAACTACGGCTACAACG
CAGCGACCGGTGAATACGGCGACATGATCGAGATGGGTATTCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75526:815..961-

>mRNA_M-pyrifera_M_contig75526.17816.1 ID=mRNA_M-pyrifera_M_contig75526.17816.1|Name=mRNA_M-pyrifera_M_contig75526.17816.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig75526:815..961- (Macrocystis pyrifera P11B4 male)
ATGGAAAACCCCCTGCGCCAGATCGTAGCAAACGCCGGTGGCGAACCTTC
GGTAGTGCTGGACAAAGTGCGCCAGGGCAAGGGCAACTACGGCTACAACG
CAGCGACCGGTGAATACGGCGACATGATCGAGATGGGTATTCTCGACATG
GAAAACCCCCTGCGCCAGATCGTAGCAAACGCCGGTGGCGAACCTTCGGT
AGTGCTGGACAAAGTGCGCCAGGGCAAGGGCAACTACGGCTACAACGCAG
CGACCGGTGAATACGGCGACATGATCGAGATGGGTATTCTCGAC
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