mRNA_M-pyrifera_M_contig75495.17814.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75495.17814.1
Unique NamemRNA_M-pyrifera_M_contig75495.17814.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A5B7AX54_DAVIN (Putative Heat shock factor (HSF)-type, DNA-binding (Fragment) n=2 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7AX54_DAVIN)

HSP 1 Score: 67.4 bits (163), Expect = 6.980e-12
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +++ + +  DV  W++DG   I ++ T FAK +LP+YFKHD ++SF RQL++
Sbjct:   25 PFLTKTYQLVDDQKIDDVISWNEDGSTFIVWNPTEFAKDLLPKYFKHDNFSSFVRQLNT 83          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A5K1GYC2_9MAGN (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1GYC2_9MAGN)

HSP 1 Score: 63.9 bits (154), Expect = 8.600e-12
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +++ +    DV  W+DDG A + +    FA+ VLP+YFKH+ ++SF RQL++
Sbjct:   38 PFLTKTYQLVDDPSVDDVISWNDDGSAFVVWRPAEFARDVLPKYFKHNNFSSFVRQLNT 96          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A485KXS3_9STRA (Aste57867_12522 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXS3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.000e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 VAPFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLH 183
            VAPFL    EIL  ++ A V GW DDGKA   YD     + +LP YF+H+K+ASFQRQL+
Sbjct:   39 VAPFLSSLFEILSKEDAA-VIGWCDDGKAFAVYDYDTMERHILPTYFRHNKYASFQRQLN 97          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A7C8YWW2_OPUST (HSF_DOMAIN domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YWW2_OPUST)

HSP 1 Score: 63.9 bits (154), Expect = 1.020e-11
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +I+ +    DV  W++DG   + ++ T FA+ +LPRYFKH+ ++SF RQL++
Sbjct:   26 PFLTKTYQIVDDPSIDDVISWNEDGSTFVVWNPTVFARDLLPRYFKHNNFSSFVRQLNT 84          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A6J0N1C7_RAPSA (heat stress transcription factor B-1-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0N1C7_RAPSA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 27/60 (45.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    7 APFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            APFL KT +++ +    DV  W++DG A + ++T  FAK +LP+YFKH+ ++SF RQL++
Sbjct:   10 APFLSKTYQLVDDQSTDDVVSWNEDGTAFVVWETAEFAKHLLPKYFKHNNFSSFIRQLNT 69          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A7N0UC77_KALFE (HSF_DOMAIN domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UC77_KALFE)

HSP 1 Score: 67.0 bits (162), Expect = 1.320e-11
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    7 APFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            APFL KT +++ +    DV  WSDDG   + + T  FAK +LP+YFKH+ ++SF RQL++
Sbjct:    8 APFLTKTFQLVDDRSTDDVVSWSDDGSTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNT 67          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: T0QMC6_SAPDV (HSF_DOMAIN domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QMC6_SAPDV)

HSP 1 Score: 66.6 bits (161), Expect = 2.240e-11
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 MVAPFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLH 183
            +VAPFL    EIL  ++ A + GW DDGK+ I +D     + +LP YF+H+K+ASFQRQL+
Sbjct:   32 VVAPFLASLYEILSKED-ASIVGWCDDGKSFIVHDYDAMERDILPTYFRHNKFASFQRQLN 91          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A5A7PR65_STRAF (Heat shock transcription factor n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PR65_STRAF)

HSP 1 Score: 65.9 bits (159), Expect = 2.520e-11
Identity = 26/59 (44.07%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +++ +    D+  W+DDG A I ++ T FA+ +LP+YFKH+ ++SF RQL++
Sbjct:   27 PFLTKTYQLVDDRSIDDIISWNDDGSAFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNT 85          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A5A7P2H2_STRAF (Heat shock transcription factor n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P2H2_STRAF)

HSP 1 Score: 65.5 bits (158), Expect = 2.680e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +++ + E  DV  W+ DG   I +DT  FA+ +LP+YFKH+ ++SF RQL++
Sbjct:   22 PFLTKTYQLVDDREIDDVISWNADGSTFIVWDTAEFAREMLPKYFKHNNFSSFIRQLNT 80          
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Match: A0A6P5YDB2_DURZI (heat stress transcription factor B-2a-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YDB2_DURZI)

HSP 1 Score: 66.2 bits (160), Expect = 2.910e-11
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 PFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKHDKWASFQRQLHS 186
            PFL KT +++ +    DV  W+DDG   I ++TT FA+ +LP+YFKH+ ++SF RQL++
Sbjct:   26 PFLTKTYQLVDDHRIDDVISWNDDGSTFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNT 84          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75495.17814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B7AX54_DAVIN6.980e-1245.76Putative Heat shock factor (HSF)-type, DNA-binding... [more]
A0A5K1GYC2_9MAGN8.600e-1244.07HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A485KXS3_9STRA1.000e-1153.33Aste57867_12522 protein n=1 Tax=Aphanomyces stella... [more]
A0A7C8YWW2_OPUST1.020e-1144.07HSF_DOMAIN domain-containing protein n=1 Tax=Opunt... [more]
A0A6J0N1C7_RAPSA1.080e-1145.00heat stress transcription factor B-1-like n=1 Tax=... [more]
A0A7N0UC77_KALFE1.320e-1146.67HSF_DOMAIN domain-containing protein n=1 Tax=Kalan... [more]
T0QMC6_SAPDV2.240e-1149.18HSF_DOMAIN domain-containing protein n=2 Tax=Sapro... [more]
A0A5A7PR65_STRAF2.520e-1144.07Heat shock transcription factor n=1 Tax=Striga asi... [more]
A0A5A7P2H2_STRAF2.680e-1145.76Heat shock transcription factor n=1 Tax=Striga asi... [more]
A0A6P5YDB2_DURZI2.910e-1145.76heat stress transcription factor B-2a-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75495contigM-pyrifera_M_contig75495:678..869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog112098.XP_008607310.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.0101686-CDS-M-pyrifera_M_contig75495:677..8691622816653.0101686-CDS-M-pyrifera_M_contig75495:677..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75495 678..869 +
1692278100.2534797-CDS-M-pyrifera_M_contig75495:677..8691692278100.2534797-CDS-M-pyrifera_M_contig75495:677..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75495 678..869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75495.17814.1prot_M-pyrifera_M_contig75495.17814.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75495 678..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75495.17814.1

>prot_M-pyrifera_M_contig75495.17814.1 ID=prot_M-pyrifera_M_contig75495.17814.1|Name=mRNA_M-pyrifera_M_contig75495.17814.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MVAPFLQKTVEILGNDEFADVCGWSDDGKAVIFYDTTRFAKTVLPRYFKH
DKWASFQRQLHST*
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mRNA from alignment at M-pyrifera_M_contig75495:678..869+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75495.17814.1 ID=mRNA_M-pyrifera_M_contig75495.17814.1|Name=mRNA_M-pyrifera_M_contig75495.17814.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig75495:678..869+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCACCTTTCTTGCAAAAAACGGTGGAGATTCTTGGAAACGATGA GTTTGCCGATGTGTGCGGCTGGTCCGATGATGGAAAGGCCGTGATCTTCT ACGATACAACGCGGTTTGCCAAAACTGTCCTCCCTCGCTACTTCAAGCAC GACAAATGGGCCAGTTTTCAACGCCAGTTGCACAGTACGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75495:678..869+

>mRNA_M-pyrifera_M_contig75495.17814.1 ID=mRNA_M-pyrifera_M_contig75495.17814.1|Name=mRNA_M-pyrifera_M_contig75495.17814.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig75495:678..869+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCACCTTTCTTGCAAAAAACGGTGGAGATTCTTGGAAACGATGA
GTTTGCCGATGTGTGCGGCTGGTCCGATGATGGAAAGGCCGTGATCTTCT
ACGATACAACGCGGTTTGCCAAAACTGTCCTCCCTCGCTACTTCAAGCAC
GACAAATGGGCCAGTTTTCAACGCCAGTTGCACAGTACGTGAATGGTGGC
ACCTTTCTTGCAAAAAACGGTGGAGATTCTTGGAAACGATGAGTTTGCCG
ATGTGTGCGGCTGGTCCGATGATGGAAAGGCCGTGATCTTCTACGATACA
ACGCGGTTTGCCAAAACTGTCCTCCCTCGCTACTTCAAGCACGACAAATG
GGCCAGTTTTCAACGCCAGTTGCACAGTACGTGA
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