mRNA_M-pyrifera_M_contig7547.17804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7547.17804.1
Unique NamemRNA_M-pyrifera_M_contig7547.17804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: D7G4D2_ECTSI (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.400e-30
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPM TLPD KLMALFATG+ +MR
Sbjct:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 58
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: A0A6H5JSZ9_9PHAE (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.300e-29
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPM TLPD KLMALFATG+ +MR
Sbjct:  138 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMGTLPDAKLMALFATGSVLMR 195
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: D7G4D3_ECTSI (4-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.090e-27
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            MLGP WSPYGRLARIDKPAGTLLL+FPCWW +ALAAP+ TLPD KLM  FA G+ ++R
Sbjct:    1 MLGPNWSPYGRLARIDKPAGTLLLMFPCWWDLALAAPIGTLPDAKLMTKFAMGSFLLR 58
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: A0A835ZKZ5_9STRA (4-hydroxybenzoate polyprenyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKZ5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.130e-22
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            +LG R++PYGRLAR+DKP GT+LLL+PCWWS ALAAP   LPD KL+ALF TGA VMR
Sbjct:    4 LLGTRFAPYGRLARVDKPIGTMLLLWPCWWSTALAAPAGALPDFKLLALFGTGAFVMR 61
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: UPI001EFE17F9 (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI001EFE17F9)

HSP 1 Score: 86.3 bits (212), Expect = 1.260e-18
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            W PY  LAR+D+P GT LLLFPCWWSIALAAP    PDL+LMALFA GA VMR
Sbjct:   32 WRPYALLARLDRPIGTWLLLFPCWWSIALAAPAGHWPDLRLMALFALGAVVMR 84
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: UPI001CEC92D4 (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI001CEC92D4)

HSP 1 Score: 82.8 bits (203), Expect = 2.560e-17
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   19 SPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            +PY RLAR+D+P GT LLLFPCWWSIALA P    PDL LMALFA GA VMR
Sbjct:   38 TPYARLARLDRPIGTWLLLFPCWWSIALATPAGQWPDLYLMALFAIGAVVMR 89
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: B6IXF0_RHOCS (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IXF0_RHOCS)

HSP 1 Score: 80.1 bits (196), Expect = 2.450e-16
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            W PY RLAR+D+P GT LLLFP WW+IA+AAP    PDL LMALFA GA VMR
Sbjct:   35 WRPYARLARLDRPIGTWLLLFPGWWAIAMAAPPGHWPDLWLMALFAIGAVVMR 87
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: A0A255YUS9_9PROT (4-hydroxybenzoate octaprenyltransferase n=1 Tax=Niveispirillum lacus TaxID=1981099 RepID=A0A255YUS9_9PROT)

HSP 1 Score: 79.7 bits (195), Expect = 3.320e-16
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            W PY RLAR+D+P GT LLL PCWWSIALAAP    PDL LM LF  GA ++R
Sbjct:   28 WRPYARLARLDRPIGTWLLLLPCWWSIALAAPAGGWPDLWLMLLFGIGAVILR 80
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BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: A0A431VNX2_9PROT (4-hydroxybenzoate octaprenyltransferase n=2 Tax=Azospirillum TaxID=191 RepID=A0A431VNX2_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 4.470e-16
Identity = 37/53 (69.81%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            W PY  LAR+D+P GT LLLFPCWWS+ALAAP    PDL LMALF  GA VMR
Sbjct:   29 WRPYATLARLDRPIGTWLLLFPCWWSLALAAPRW--PDLWLMALFGLGALVMR 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Match: A0A0N0K9R7_9PROT (4-hydroxybenzoate octaprenyltransferase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0K9R7_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 4.590e-16
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   16 WSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALFATGAAVMR 174
            W PY RLAR+D+P GT LLL PCWWSIALAAP    P+L LM LF  GA VMR
Sbjct:   28 WRPYARLARLDRPIGTWLLLLPCWWSIALAAPAGGWPNLWLMFLFGVGAVVMR 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7547.17804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D2_ECTSI1.400e-3091.384-hydroxybenzoate polyprenyltransferase, mitochond... [more]
A0A6H5JSZ9_9PHAE1.300e-2991.384-hydroxybenzoate polyprenyltransferase, mitochond... [more]
D7G4D3_ECTSI2.090e-2775.864-hydroxybenzoate nonaprenyltransferase n=1 Tax=Ec... [more]
A0A835ZKZ5_9STRA2.130e-2272.414-hydroxybenzoate polyprenyltransferase, mitochond... [more]
UPI001EFE17F91.260e-1873.584-hydroxybenzoate octaprenyltransferase n=1 Tax=Ol... [more]
UPI001CEC92D42.560e-1773.084-hydroxybenzoate octaprenyltransferase n=1 Tax=In... [more]
B6IXF0_RHOCS2.450e-1669.814-hydroxybenzoate octaprenyltransferase n=1 Tax=Rh... [more]
A0A255YUS9_9PROT3.320e-1666.044-hydroxybenzoate octaprenyltransferase n=1 Tax=Ni... [more]
A0A431VNX2_9PROT4.470e-1669.814-hydroxybenzoate octaprenyltransferase n=2 Tax=Az... [more]
A0A0N0K9R7_9PROT4.590e-1667.924-hydroxybenzoate octaprenyltransferase n=2 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7547contigM-pyrifera_M_contig7547:247..423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.3e-24
Seed eggNOG ortholog2880.D7G4D2
Preferred nameCOQ2
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K07964,ko:K13412
KEGG ReactionR05000,R05616,R07273,R07811
KEGG Pathwayko00130,ko00531,ko01100,ko01110,ko04626,ko05145,ko05205,map00130,map00531,map01100,map01110,map04626,map05145,map05205
KEGG ModuleM00078,M00128
Hectar predicted targeting categorysignal peptide
GOsGO:0000428,GO:0002083,GO:0002094,GO:0003674,GO:0003824,GO:0004659,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005975,GO:0006066,GO:0006071,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008412,GO:0009058,GO:0009059,GO:0009108,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009987,GO:0010259,GO:0010467,GO:0016020,GO:0016021,GO:0016070,GO:0016740,GO:0016765,GO:0018130,GO:0019400,GO:0019438,GO:0019748,GO:0019751,GO:0019866,GO:0030880,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032592,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042180,GO:0042181,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044455,GO:0044464,GO:0044550,GO:0046483,GO:0048856,GO:0050829,GO:0050830,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098542,GO:0098573,GO:1900558,GO:1900560,GO:1900561,GO:1900563,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901661,GO:1901663,GO:1902494,GO:1990234
EggNOG free text desc.4-hydroxybenzoate decaprenyltransferase activity
EggNOG OGsCOG0382@1,KOG1381@2759
Ec32 ortholog description4-hydroxybenzoate nonaprenyltransferase
Ec32 orthologEc-00_007360.1
EC2.5.1.39,2.7.11.1,3.2.1.166
COG Functional cat.H
CAZyGH79
BiGG ReactioniMM904.YNR041C,iND750.YNR041C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01006
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.5539906-CDS-M-pyrifera_M_contig7547:246..4231622816652.5539906-CDS-M-pyrifera_M_contig7547:246..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7547 247..423 -
1692278100.0026245-CDS-M-pyrifera_M_contig7547:246..4231692278100.0026245-CDS-M-pyrifera_M_contig7547:246..423Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7547 247..423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7547.17804.1prot_M-pyrifera_M_contig7547.17804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7547 247..423 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7547.17804.1

>prot_M-pyrifera_M_contig7547.17804.1 ID=prot_M-pyrifera_M_contig7547.17804.1|Name=mRNA_M-pyrifera_M_contig7547.17804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MLGPRWSPYGRLARIDKPAGTLLLLFPCWWSIALAAPMHTLPDLKLMALF
ATGAAVMR*
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mRNA from alignment at M-pyrifera_M_contig7547:247..423-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7547.17804.1 ID=mRNA_M-pyrifera_M_contig7547.17804.1|Name=mRNA_M-pyrifera_M_contig7547.17804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig7547:247..423- (Macrocystis pyrifera P11B4 male)
ATGCTTGGCCCGCGCTGGAGCCCTTACGGGCGCTTGGCCAGAATTGACAA
GCCGGCTGGAACCCTGCTTCTCCTCTTTCCTTGCTGGTGGAGCATTGCGC
TGGCTGCGCCGATGCACACCCTGCCGGATTTGAAGCTGATGGCCTTGTTT
GCCACCGGTGCTGCTGTGATGAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7547:247..423-

>mRNA_M-pyrifera_M_contig7547.17804.1 ID=mRNA_M-pyrifera_M_contig7547.17804.1|Name=mRNA_M-pyrifera_M_contig7547.17804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig7547:247..423- (Macrocystis pyrifera P11B4 male)
ATGCTTGGCCCGCGCTGGAGCCCTTACGGGCGCTTGGCCAGAATTGACAA
GCCGGCTGGAACCCTGCTTCTCCTCTTTCCTTGCTGGTGGAGCATTGCGC
TGGCTGCGCCGATGCACACCCTGCCGGATTTGAAGCTGATGGCCTTGTTT
GCCACCGGTGCTGCTGTGATGAGGTGAATGCTTGGCCCGCGCTGGAGCCC
TTACGGGCGCTTGGCCAGAATTGACAAGCCGGCTGGAACCCTGCTTCTCC
TCTTTCCTTGCTGGTGGAGCATTGCGCTGGCTGCGCCGATGCACACCCTG
CCGGATTTGAAGCTGATGGCCTTGTTTGCCACCGGTGCTGCTGTGATGAG
GTGA
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