mRNA_M-pyrifera_M_contig75448.17799.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75448.17799.1
Unique NamemRNA_M-pyrifera_M_contig75448.17799.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A1Y1I2K8_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I2K8_KLENI)

HSP 1 Score: 68.6 bits (166), Expect = 4.940e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   10 LLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEIESM 171
            LLA HN +FKAKPAYEPR HS+R  + WE  SGK Y +L+  ERE ANEEI  M
Sbjct:  549 LLAQHNRRFKAKPAYEPRMHSVRDTKQWEAVSGKTYYQLAPEEREAANEEITRM 602          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A329RJ34_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RJ34_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.740e-10
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:    1 IEELLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEI 162
            ++ELL  HN KFKA   YEP +HS+RQV+ WE+ +GK Y  LS AER  AN+EI
Sbjct:  176 LQELLKKHNKKFKATHTYEPPQHSVRQVKQWERETGKSYYALSAAERVQANQEI 229          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A8J5XQL1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQL1_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 5.330e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 ELLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEIESM 171
            +LL  HN+KF  KPAYEPR+HS++ V+ WEK  G++Y EL F  R  AN +I +M
Sbjct:  415 DLLRQHNAKFAPKPAYEPRQHSVKAVKEWEKAHGRRYHELGFEARAEANRQIAAM 469          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A833WXK1_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WXK1_PHYIN)

HSP 1 Score: 57.0 bits (136), Expect = 3.920e-8
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 IEELLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEI 162
            + ELL  HN KFKA   YEP +HS+R+V+ WE+ +GK Y  LS  ER  AN++I
Sbjct:  179 LHELLKKHNKKFKAIHTYEPPQHSVREVKQWERDTGKSYYALSAEERVQANQDI 232          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: D8RLL5_SELML (Uncharacterized protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RLL5_SELML)

HSP 1 Score: 53.1 bits (126), Expect = 1.330e-6
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   10 LLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEI 162
            L+A HNSKF  KP YEPR HS R +R WE+ +G+ Y  L   ER   N++I
Sbjct:  373 LIAKHNSKFLLKPKYEPRLHSTRDIREWERRTGQLYYSLQPIERVKVNQDI 423          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A836CC55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC55_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.770e-6
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 IEELLAAHN-SKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEIESMTKK 180
            +E L++ HN S  K K  YEP +H+++  +AWE  +GK+Y ELS  +R  AN  I+ M ++
Sbjct:    4 LEALISKHNKSVMKGKATYEPSRHTLKDYKAWETKTGKRYHELSVDQRAEANTAIDDMKRQ 64          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A024GSS4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSS4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.230e-6
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 IEELLAAHNSKFK-AKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEIESM 171
            +++LL  HN   K  K  YEPR HS+R VR WEK S KKY +LS + R  AN EI  +
Sbjct:  185 LQQLLDKHNRGIKRTKHTYEPRHHSVRDVRLWEKHSKKKYYDLSPSSRVTANAEISKL 242          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A2K1IJF0_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IJF0_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 8.810e-6
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   10 LLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEI 162
            L A HN KF+ K  YEPR HS++ +R WE  +G+ +  L  AERE AN EI
Sbjct:  701 LQAEHNRKFRPKTKYEPRIHSVKDIREWEARTGQLFYNLPPAEREKANVEI 751          
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Match: A0A2D4BT78_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT78_PYTIN)

HSP 1 Score: 49.7 bits (117), Expect = 1.540e-5
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 IEELLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIANEEIESMTKK 180
            ++ LLA HN KFK+   YEPR+HS+R VR     + K Y  LS  ER  ANEEI ++ ++
Sbjct:  147 LQALLAKHNKKFKSAHTYEPRQHSVRDVRT---QNNKSYYTLSSDERLQANEEIAALVRQ 203          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75448.17799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1Y1I2K8_KLENI4.940e-1262.96Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A329RJ34_9STRA2.740e-1057.41Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A8J5XQL1_DIALT5.330e-1052.73Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A833WXK1_PHYIN3.920e-851.85Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
D8RLL5_SELML1.330e-650.98Uncharacterized protein n=5 Tax=Selaginella moelle... [more]
A0A836CC55_9STRA1.770e-640.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A024GSS4_9STRA5.230e-650.00Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2K1IJF0_PHYPA8.810e-650.98Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
A0A2D4BT78_PYTIN1.540e-546.67Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75448contigM-pyrifera_M_contig75448:3..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_000060.1
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.2499516-CDS-M-pyrifera_M_contig75448:2..1851622816652.2499516-CDS-M-pyrifera_M_contig75448:2..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75448 3..185 +
1692278099.8259661-CDS-M-pyrifera_M_contig75448:2..1851692278099.8259661-CDS-M-pyrifera_M_contig75448:2..185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75448 3..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75448.17799.1prot_M-pyrifera_M_contig75448.17799.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75448 3..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75448.17799.1

>prot_M-pyrifera_M_contig75448.17799.1 ID=prot_M-pyrifera_M_contig75448.17799.1|Name=mRNA_M-pyrifera_M_contig75448.17799.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
IEELLAAHNSKFKAKPAYEPRKHSIRQVRAWEKTSGKKYAELSFAEREIA
NEEIESMTKK*
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mRNA from alignment at M-pyrifera_M_contig75448:3..185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75448.17799.1 ID=mRNA_M-pyrifera_M_contig75448.17799.1|Name=mRNA_M-pyrifera_M_contig75448.17799.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig75448:3..185+ (Macrocystis pyrifera P11B4 male)
ATTGAAGAGCTATTGGCAGCACATAACAGTAAGTTCAAGGCAAAACCAGC ATATGAGCCTAGAAAGCACTCGATTCGGCAAGTCAGAGCGTGGGAAAAGA CGTCTGGGAAAAAGTACGCCGAGTTGTCGTTTGCAGAGAGGGAAATTGCC AATGAAGAAATCGAATCCATGACCAAGAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75448:3..185+

>mRNA_M-pyrifera_M_contig75448.17799.1 ID=mRNA_M-pyrifera_M_contig75448.17799.1|Name=mRNA_M-pyrifera_M_contig75448.17799.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig75448:3..185+ (Macrocystis pyrifera P11B4 male)
ATTGAAGAGCTATTGGCAGCACATAACAGTAAGTTCAAGGCAAAACCAGC
ATATGAGCCTAGAAAGCACTCGATTCGGCAAGTCAGAGCGTGGGAAAAGA
CGTCTGGGAAAAAGTACGCCGAGTTGTCGTTTGCAGAGAGGGAAATTGCC
AATGAAGAAATCGAATCCATGACCAAGAAGTGAATTGAAGAGCTATTGGC
AGCACATAACAGTAAGTTCAAGGCAAAACCAGCATATGAGCCTAGAAAGC
ACTCGATTCGGCAAGTCAGAGCGTGGGAAAAGACGTCTGGGAAAAAGTAC
GCCGAGTTGTCGTTTGCAGAGAGGGAAATTGCCAATGAAGAAATCGAATC
CATGACCAAGAAGTGA
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