mRNA_M-pyrifera_M_contig75379.17792.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75379.17792.1
Unique NamemRNA_M-pyrifera_M_contig75379.17792.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: A0A7S3AXK5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXK5_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-20
Identity = 72/200 (36.00%), Postives = 98/200 (49.00%), Query Frame = 1
Query:    1 LIGTQSRGLSMARTLGSASPNQVTVSGRRVLIGW----------LSGATAVQSLPRDLTISKHGELLQAFVPELGVLRASPTPLPPSGSPANASLAAEIIADFALNLDQGFPQT-PFGINLQVGDGGATGLLLDLPNEHILIGDRAAPYIED----PDNPTHI----------HVHVFVDHGIIEVIVNNRTAATIYDQP 525
            L GT SRGLSMARTLGS   +QV + GR+VLIGW          +    + QSLPR+L+++    LLQ FVPEL  LR SP    P G+ ++  L AE+ A       +        G+++  GDG     +  +P   +++ +      ED    P  P              +H  +DH IIEVIVNN TA  +Y  P
Sbjct:   46 LSGTASRGLSMARTLGSEEADQVNLPGRKVLIGWTGPAPGSMPQIGNGASAQSLPRELSLAPDRSLLQRFVPELKSLRTSPLTTTP-GASSSPGLQAEVYATLPAECGEVVGAVGACGVSV-FGDGANATTISLMPYIGLVVINGTLQGNEDVRGGPLPPPCTLATCGVEGGWRIHAILDHSIIEVIVNNATAFVVYASP 243          
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: A0A7S2JF22_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JF22_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-18
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   31 MARTLGSASPNQVTVSGRRVLIGWLSGATAVQSLPRDLTISKHGELLQAFVPELGVLRA----SPTPLPPSGSP------ANASLAAEIIADFALNLDQGFPQTPFGINLQVGDGGATGLLLD 369
            MARTLGS  PNQV VSGRRVL+GW+ G  A QSL RDL++S   ELLQAFVPEL  LR     + T + PS +        + SL  E++  F+       P +PFG+++    GG+T + +D
Sbjct:    1 MARTLGS-DPNQVAVSGRRVLLGWIGGTPASQSLARDLSLSNQHELLQAFVPELKTLRQPSSFAVTRVAPSANDERSVVHCSGSLQLELVGHFSW-AGHDHPISPFGVSVL---GGSTSITID 118          
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: A0A0M0JVQ2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVQ2_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 5.880e-18
Identity = 72/202 (35.64%), Postives = 96/202 (47.52%), Query Frame = 1
Query:    1 LIGTQSRGLSMARTLGSASPNQVTVSGRRVLIGW----------LSGATAVQSLPRDLTISKHGELLQAFVPELGVLRASPTPLPPSGSPANASLAAEIIADFALNL-DQGFPQTPFGINLQVGDGGATGLLLDLPNEHILIGD---------RAAPYIEDPDNPT-------HIHVHVFVDHGIIEVIVNNRTAATIYDQP 525
            L G  SRG SMARTLGS   +QVTV GRRVLIGW          L+   + QS+ RDL ++    LLQ FVPEL   R +        +PA+A + AE+ A    +  D   P    GI++  GDG     +  LP+  ++  +         RA P        T          +H  +DH I+E+IVNN TA  +Y  P
Sbjct:  340 LSGKASRGFSMARTLGSEQVDQVTVPGRRVLIGWTGPAPSDMPFLANLGSAQSISRDLALAPDRSLLQRFVPELTTARLTAV------APADAGMRAEVYATLPASCADAAGPTDACGISV-FGDGVNATTIKLLPSVGLVAVNATLQGNTLVRAGPLPPQCTAATCGEGAEDGWRIHAILDHSILELIVNNATAFVVYVAP 534          
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: A0A7S2GR64_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GR64_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 4.960e-14
Identity = 57/128 (44.53%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    1 LIGTQSRGLSMARTLGSASPNQVTVSGRRVLIGW----------LSGATAVQSLPRDLTISKHGELLQAFVPELGVLRASPTPLPPSGSPA-NASLAAEIIADFALNL-DQGFPQTPFGINLQVGDGG 348
            L G  SRGLSMARTLGS + +QVT  GR+VLIGW          L G  + QSLPR+L++     LLQ FV EL  LR   +    +GS   +A L AE+ AD      D     T  G++L  GDGG
Sbjct:  127 LSGMASRGLSMARTLGSENADQVTQPGRKVLIGWTGPAPKGMPQLGGRASAQSLPRELSLGPDRSLLQRFVLELETLRIQTSLRYITGSATYDAGLQAEVYADLPAECADATSAATACGVSLY-GDGG 253          
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: A0A7S2TW26_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TW26_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.180e-11
Identity = 69/201 (34.33%), Postives = 92/201 (45.77%), Query Frame = 1
Query:   10 TQSRGLSMARTLGSASPNQVTVSGRRVLIGWLS-GATAVQSLPRDLTISKHGELLQAFVPELGVLRASPTPLP---------PSGSPANASLA----AEIIADFALNLD-QGFPQTPFGINLQVGDGGA--TGLLLDLPNEHILIGDRAAPYIEDPDNPT------------HIHVHVFVDHGIIEVIVNNRTAATIYDQP 525
            T  R  SMAR LGS   N V  SGR+V+  WL     A+ SL RDL++     LLQAFVPEL  LR   +             SG   N ++     AEI  +F   ++ Q      FGIN+   D     T L +DL +   +I        +    P              I +HV+VD G+IE+IVNNRTA ++  +P
Sbjct:   37 TVDRVYSMARALGSEQQNHVLGSGRKVMFAWLKENPNAILSLGRDLSLDDDLTLLQAFVPELQALRVQGSHALLSSDRQQQFSSGEDNNMAVRVGMHAEIYGEFTNLVEAQAKGLRGFGINVLACDEQREFTRLGIDLDHGLAIINGIRQKRRKPVGGPLVFGGRGELRKMDRIAMHVYVDGGMIEMIVNNRTAVSLPVKP 237          
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Match: UPI000A083307 (GH92 family glycosyl hydrolase n=1 Tax=Paenibacillus barengoltzii TaxID=343517 RepID=UPI000A083307)

HSP 1 Score: 55.5 bits (132), Expect = 9.090e-6
Identity = 61/189 (32.28%), Postives = 85/189 (44.97%), Query Frame = 1
Query:   52 ASPNQVTVSGRRVLIGWL-----------SGATAVQSLPRDLTISKHGE---LLQAFVPELGVLRASPTPLPPS-GSPANASL-----AAEIIADFALNLDQGFPQTPFGINLQVGDGGA--TGLLLDLPNEHILIGDRA--------------APYIEDPDNPTHIHVHVFVDHGIIEVIVNNRTAAT 510
            A  + +   GRR+L GWL            G + VQS+PR  T+  H +   L+   V EL VLR +P  LP +  SP +  L     AAEIIA+F L   +    T FG  +     G   T L  D+    I++ DR+              APY  +      + VH+F+DH I+EV VN+    T
Sbjct: 1015 APQSMLAPDGRRILWGWLPDNARGEMKEIQGWSGVQSIPR--TVELHPDTNTLIFKPVVELQVLRETPYELPKTVWSPGHHELGIQGKAAEIIAEFELIGSE----TSFGFEVFRSPDGEEQTTLKFDVSGGQIVL-DRSRSSQAAGVHSWELVAPY--EMQQHKQLRVHLFLDHSIVEVFVNDELCLT 1194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75379.17792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3AXK5_9EUKA1.160e-2036.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2JF22_9EUKA1.890e-1845.53Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0JVQ2_9EUKA5.880e-1835.64Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S2GR64_9EUKA4.960e-1444.53Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2TW26_9EUKA1.180e-1134.33Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
UPI000A0833079.090e-632.28GH92 family glycosyl hydrolase n=1 Tax=Paenibacill... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75379contigM-pyrifera_M_contig75379:166..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog81824.XP_001742962.1
Hectar predicted targeting categorymitochondrion
EggNOG OGs2EK2C@1,2SQ2I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size525
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.990299-UTR-M-pyrifera_M_contig75379:165..1951622816651.990299-UTR-M-pyrifera_M_contig75379:165..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75379 166..195 +
1692278099.7297204-UTR-M-pyrifera_M_contig75379:165..1951692278099.7297204-UTR-M-pyrifera_M_contig75379:165..195Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75379 166..195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816652.003029-CDS-M-pyrifera_M_contig75379:195..6901622816652.003029-CDS-M-pyrifera_M_contig75379:195..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75379 196..690 +
1692278099.7457128-CDS-M-pyrifera_M_contig75379:195..6901692278099.7457128-CDS-M-pyrifera_M_contig75379:195..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75379 196..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75379.17792.1prot_M-pyrifera_M_contig75379.17792.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75379 196..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75379.17792.1

>prot_M-pyrifera_M_contig75379.17792.1 ID=prot_M-pyrifera_M_contig75379.17792.1|Name=mRNA_M-pyrifera_M_contig75379.17792.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MARTLGSASPNQVTVSGRRVLIGWLSGATAVQSLPRDLTISKHGELLQAF
VPELGVLRASPTPLPPSGSPANASLAAEIIADFALNLDQGFPQTPFGINL
QVGDGGATGLLLDLPNEHILIGDRAAPYIEDPDNPTHIHVHVFVDHGIIE
VIVNNRTAATIYDQP
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mRNA from alignment at M-pyrifera_M_contig75379:166..690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75379.17792.1 ID=mRNA_M-pyrifera_M_contig75379.17792.1|Name=mRNA_M-pyrifera_M_contig75379.17792.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig75379:166..690+ (Macrocystis pyrifera P11B4 male)
CTCATTGGAACACAATCACGAGGATTAAGCATGGCAAGAACACTTGGGAG TGCAAGTCCAAATCAAGTTACAGTGTCTGGACGTCGTGTGTTGATTGGAT GGCTGAGTGGGGCTACAGCTGTGCAATCGTTGCCAAGAGATCTTACAATC TCAAAGCATGGTGAACTCTTGCAAGCTTTTGTTCCAGAACTTGGTGTGCT GCGTGCATCACCCACTCCCCTTCCACCATCTGGTTCTCCAGCGAATGCAT CCCTCGCTGCTGAAATCATCGCTGATTTCGCACTCAACTTGGACCAAGGA TTTCCTCAAACTCCATTCGGAATCAACCTTCAAGTTGGGGATGGTGGAGC AACAGGCCTTCTTCTCGACCTTCCAAACGAACACATTCTCATCGGAGACC GCGCAGCACCATACATTGAAGATCCAGACAATCCAACGCACATTCACGTG CATGTCTTTGTGGACCATGGGATCATTGAGGTGATTGTGAACAACAGAAC AGCGGCAACGATCTACGACCAACCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75379:166..690+

>mRNA_M-pyrifera_M_contig75379.17792.1 ID=mRNA_M-pyrifera_M_contig75379.17792.1|Name=mRNA_M-pyrifera_M_contig75379.17792.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig75379:166..690+ (Macrocystis pyrifera P11B4 male)
ATGGCAAGAACACTTGGGAGTGCAAGTCCAAATCAAGTTACAGTGTCTGG
ACGTCGTGTGTTGATTGGATGGCTGAGTGGGGCTACAGCTGTGCAATCGT
TGCCAAGAGATCTTACAATCTCAAAGCATGGTGAACTCTTGCAAGCTTTT
GTTCCAGAACTTGGTGTGCTGCGTGCATCACCCACTCCCCTTCCACCATC
TGGTTCTCCAGCGAATGCATCCCTCGCTGCTGAAATCATCGCTGATTTCG
CACTCAACTTGGACCAAGGATTTCCTCAAACTCCATTCGGAATCAACCTT
CAAGTTGGGGATGGTGGAGCAACAGGCCTTCTTCTCGACCTTCCAAACGA
ACACATTCTCATCGGAGACCGCGCAGCACCATACATTGAAGATCCAGACA
ATCCAACGCACATTCACGTGCATGTCTTTGTGGACCATGGGATCATTGAG
GTGATTGTGAACAACAGAACAGCGGCAACGATCTACGACCAACCGATGGC
AAGAACACTTGGGAGTGCAAGTCCAAATCAAGTTACAGTGTCTGGACGTC
GTGTGTTGATTGGATGGCTGAGTGGGGCTACAGCTGTGCAATCGTTGCCA
AGAGATCTTACAATCTCAAAGCATGGTGAACTCTTGCAAGCTTTTGTTCC
AGAACTTGGTGTGCTGCGTGCATCACCCACTCCCCTTCCACCATCTGGTT
CTCCAGCGAATGCATCCCTCGCTGCTGAAATCATCGCTGATTTCGCACTC
AACTTGGACCAAGGATTTCCTCAAACTCCATTCGGAATCAACCTTCAAGT
TGGGGATGGTGGAGCAACAGGCCTTCTTCTCGACCTTCCAAACGAACACA
TTCTCATCGGAGACCGCGCAGCACCATACATTGAAGATCCAGACAATCCA
ACGCACATTCACGTGCATGTCTTTGTGGACCATGGGATCATTGAGGTGAT
TGTGAACAACAGAACAGCGGCAACGATCTACGACCAACCG
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