mRNA_M-pyrifera_M_contig75368.17789.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75368.17789.1
Unique NamemRNA_M-pyrifera_M_contig75368.17789.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A7S0PC27_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PC27_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 1.080e-21
Identity = 73/194 (37.63%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEWAIGGEDAEQVRDP--ASLQSTPTSLPKPPPPTSPPHDEDGMMSFDIR-TGQAAAEQ 573
            LRD     + ILD  + +  + LR C VFIAAS ESVF+R+C DC V++A                  KT+PIIETS  M F PF GA   +   +  A L    + WN++FDFNKG E      H+ +LP  + K  +I  +      +P  AS Q+T  S   P    S      GM++FDIR T Q+ AE+
Sbjct:  186 LRDLTDCTVEILDHCDAMHVEALRRCTVFIAASSESVFMRDCHDCDVWLACKQLRTRDCSNCRLFLYSKTDPIIETSTGMGFAPFTGASPKLDEMFASAHLAPERNLWNRVFDFNKG-ETCVPEPHWSVLPTEQIKSRSIVVDGLPAPVNPVEASPQATTGSAVAPSRGAS----SGGMVAFDIRSTSQSDAER 374          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A5A8EAY2_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EAY2_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 1.190e-21
Identity = 73/194 (37.63%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEWAIGGEDAEQVRDP--ASLQSTPTSLPKPPPPTSPPHDEDGMMSFDIR-TGQAAAEQ 573
            LRD     + ILD  + +  + LR C VFIAAS ESVF+R+C DC V++A                  KT+PIIETS  M F PF GA   +   +  A L    + WN++FDFNKG E      H+ +LP  + K  +I  +      +P  AS Q+T  S   P    S      GM++FDIR T Q+ AE+
Sbjct:  195 LRDLTDCTVEILDHCDAMHVEALRRCTVFIAASSESVFMRDCHDCDVWLACKQLRTRDCSNCRLFLYSKTDPIIETSTGMGFAPFTGASPKLDEMFASAHLAPERNLWNRVFDFNKG-ETCVPEPHWSVLPTEQIKSRSIVVDGLPAPVNPVEASPQATTGSAVAPSRGAS----SGGMVAFDIRSTSQSDAER 383          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A7S1C1T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1T6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-20
Identity = 69/189 (36.51%), Postives = 95/189 (50.26%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILP-QSEWKEWAIGGEDAEQV----RDPASLQSTPTSLPKPPPPTSPPHDEDGMMSFDIRT 552
            L DC    +++LD S+ V  D ++N +VFI  SCESVF+R+C D V  +A      XXX         +T+PIIETS RM F PF GA  GI+  ++ + LD   + W  +FDFNKG E      H + +  ++EW +W +  +    V    RD A+   T                E   MSFDIRT
Sbjct:   41 LDDCT---VMLLDYSDQVQVDFVKNSKVFIGPSCESVFVRDCSDTVFTIACKQLRTXXXSNCTFFLYSQTDPIIETSTRMRFAPFNGAYPGIEDGFRASRLDPVNNHWKNVFDFNKG-EASIPEPHLEFVDLETEWVDWHVDVDGRSGVNPVPRDAAAPVETDAFA-------GSKKGETTEMSFDIRT 218          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A7S3ZVD6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVD6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.910e-19
Identity = 68/145 (46.90%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEW-AIGGED 432
            + +C G EIVI D  + V  D+L+ CRVF+ AS ESVF+R+C DC  Y+A      XXXXXXXXXX  KTEPIIE S  + F PFLG         K A LD S + W  +FDFN   +    + H+  L +SE K W   GG D
Sbjct:   51 IAECEGCEIVITDHCDQVQIDQLKTCRVFLGASSESVFVRDCSDCTFYLACKQLRTXXXXXXXXXXYAKTEPIIELSDGICFAPFLGGYPEQAQHMKSANLDPSYNLWWGVFDFNDEFKT---LNHWKYLDESERKPWFPRGGTD 192          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A8J2SL21_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL21_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-19
Identity = 68/145 (46.90%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEW-AIGGED 432
            + +C G EIVI D  + V  D+L+ CRVF+ AS ESVF+R+C DC  Y+A      XXXXXXXXXX  KTEPIIE S  + F PFLG         K A LD S + W  +FDFN   +    + H+  L +SE K W   GG D
Sbjct:   51 IAECEGCEIVITDHCDQVQIDQLKTCRVFLGASSESVFVRDCSDCTFYLACKQLRTXXXXXXXXXXYAKTEPIIELSDGICFAPFLGGYPEQAQHMKSANLDPSYNLWWGVFDFNDEFKT---LNHWKYLDESERKPWFPRGGTD 192          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A5A8CNY9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNY9_CAFRO)

HSP 1 Score: 94.7 bits (234), Expect = 3.550e-19
Identity = 55/140 (39.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEWAI 420
            LRD     + ILD  + +  + LR C VFIAAS ESVF+R+C DC V++A                  KT+PIIETS  M F PF GA   +   +  A L    + WN++FDFNKG E      H+ +LP  + K  +I
Sbjct:  187 LRDLTDCTVEILDHCDAMHVEALRRCTVFIAASSESVFMRDCHDCDVWLACKQLRTRDCSNCRLFLYSKTDPIIETSTGMGFAPFTGASPKLDEMFASAHLAPERNLWNRVFDFNKG-ETCVPEPHWSVLPTEQIKSRSI 325          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: F0YC98_AURAN (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC98_AURAN)

HSP 1 Score: 90.9 bits (224), Expect = 1.420e-18
Identity = 67/194 (34.54%), Postives = 90/194 (46.39%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEWAIGGEDAEQV---RDPASLQSTPTSLPKPPPPTSPPHDEDGMMSFDIRTGQAAAEQ 573
            + DC G E+V+ D  + V  D L++C+VF+ AS E+VF+R C D V Y+A                  +TEPIIETS  M F PF G      A    A LD + + W  LFDFN   +      ++  +P +E  E       A+QV     P S  S P+         +  +   GMMSFD  T   AAEQ
Sbjct:   56 MADCEGCELVVADRCDQVQIDVLKSCKVFVGASSEAVFVRNCSDSVFYLACKQLRTRDCVNCTFYLYAQTEPIIETSTGMKFAPFRGGYAEQAAHMAAANLDPAINLWWGLFDFNDEAKTG---KNWSYVPDAEQAEPWFPNGGADQVCAITAPGSRSSLPSQNGG-----NFGNSSGGMMSFDFNTSLEAAEQ 241          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: K3WZP0_GLOUD (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZP0_GLOUD)

HSP 1 Score: 89.7 bits (221), Expect = 9.140e-18
Identity = 58/155 (37.42%), Postives = 80/155 (51.61%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKE-WAIGGEDAEQVRDPASL 462
            L D    E+++LD  + V  D L NCRVFI    ESVF+R C +CV  VA                   T+PIIETS +M F PF GA  GI+  +  A L+ + + W++++DFN   + D    ++ IL Q+E    W +  E    V DPASL
Sbjct:   51 LSDLDACEVLLLDQCDQVQIDSLSNCRVFIGPCSESVFVRNCTNCVFTVACKQLRTRDSSQCSFYLYSLTDPIIETSKQMQFAPFNGAYNGIERHFADARLEPTNNHWSQVYDFN---DPDKTGDNWKILAQNEEAAPWVVDLEG--HVPDPASL 200          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: W2K2M0_PHYPR (C-CAP/cofactor C-like domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2K2M0_PHYPR)

HSP 1 Score: 84.7 bits (208), Expect = 4.810e-16
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSE 402
            + D  G  I++LD    V  D L NCRVF+  S ESVF+R C +CV  +A                   T+PIIETS +M F PF GA  GI+  +  A L+ + + W++++DFN   + D    ++ IL Q E
Sbjct:   50 ISDLEGSTIMLLDHINQVQIDNLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSGCSIYLYSLTDPIIETSQQMAFAPFNGAYCGIERNFTDARLEPTNNHWSQVYDFN---DPDKTGANWRILKQEE 180          
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Match: A0A329SGU1_9STRA (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SGU1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.420e-16
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVAXXXXXXXXXXXXXXXXXXKTEPIIETSARMHFMPFLGACKGIKAAWKRAMLDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSE 402
            L D  G  +++LD    V  D L NCRVF+  S ESVF+R C +CV  +A                   T+PIIETS +M F PF GA  GI+  +  A L+ + + W++L+DFN  ++      ++ IL Q E
Sbjct:   50 LSDLEGCTVMLLDHINQVQIDNLSNCRVFVGPSSESVFVRNCTNCVFTIACKQLRTRDCSGCSLYLYSLTDPIIETSQQMAFAPFNGAYCGIERNFSDARLEPTNNHWSQLYDFNDPEKTG---VNWRILKQEE 180          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75368.17789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PC27_CAFRO1.080e-2137.63Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8EAY2_CAFRO1.190e-2137.63Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1C1T6_9STRA1.080e-2036.51Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3ZVD6_9STRA1.910e-1946.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SL21_9STRA2.600e-1946.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8CNY9_CAFRO3.550e-1939.29Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
F0YC98_AURAN1.420e-1834.54C-CAP/cofactor C-like domain-containing protein n=... [more]
K3WZP0_GLOUD9.140e-1837.42C-CAP/cofactor C-like domain-containing protein n=... [more]
W2K2M0_PHYPR4.810e-1636.57C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A329SGU1_9STRA6.420e-1636.57C-CAP/cofactor C-like domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75368contigM-pyrifera_M_contig75368:4..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue8.3e-17
Seed eggNOG ortholog44056.XP_009037891.1
KEGG koko:K18272
Hectar predicted targeting categoryother localisation
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons1
Model size573
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.8575752-CDS-M-pyrifera_M_contig75368:3..5761622816651.8575752-CDS-M-pyrifera_M_contig75368:3..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75368 4..576 +
1692278099.6498933-CDS-M-pyrifera_M_contig75368:3..5761692278099.6498933-CDS-M-pyrifera_M_contig75368:3..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75368 4..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75368.17789.1prot_M-pyrifera_M_contig75368.17789.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75368 4..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75368.17789.1

>prot_M-pyrifera_M_contig75368.17789.1 ID=prot_M-pyrifera_M_contig75368.17789.1|Name=mRNA_M-pyrifera_M_contig75368.17789.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
LRDCVGGEIVILDDSETVTADRLRNCRVFIAASCESVFLRECRDCVVYVA
CKQLRTRDCRDCTVSLYCKTEPIIETSARMHFMPFLGACKGIKAAWKRAM
LDVSCDKWNKLFDFNKGQEVDGLVTHYDILPQSEWKEWAIGGEDAEQVRD
PASLQSTPTSLPKPPPPTSPPHDEDGMMSFDIRTGQAAAEQ
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mRNA from alignment at M-pyrifera_M_contig75368:4..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75368.17789.1 ID=mRNA_M-pyrifera_M_contig75368.17789.1|Name=mRNA_M-pyrifera_M_contig75368.17789.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig75368:4..576+ (Macrocystis pyrifera P11B4 male)
TTGCGTGATTGTGTAGGGGGTGAAATTGTGATCCTGGATGATTCTGAAAC TGTCACTGCAGATCGTCTTCGAAATTGTCGTGTGTTTATTGCAGCAAGTT GCGAAAGTGTGTTTTTGAGGGAATGTCGAGATTGTGTCGTATATGTGGCT TGCAAACAATTGAGGACACGAGATTGCAGGGATTGTACTGTGTCACTTTA TTGTAAAACCGAGCCCATCATTGAAACATCTGCAAGGATGCACTTTATGC CCTTCTTGGGAGCGTGCAAAGGAATTAAGGCAGCGTGGAAGAGAGCAATG CTTGATGTCTCTTGTGACAAGTGGAACAAGCTCTTTGACTTCAACAAAGG ACAAGAAGTAGATGGTCTTGTCACTCACTATGACATCCTTCCACAATCCG AATGGAAAGAATGGGCTATTGGTGGAGAAGATGCAGAACAAGTGAGAGAT CCAGCCTCACTCCAATCCACACCAACGTCGTTGCCAAAACCTCCTCCCCC GACATCTCCTCCCCATGATGAAGATGGAATGATGAGTTTCGACATCAGAA CAGGACAAGCAGCCGCTGAGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75368:4..576+

>mRNA_M-pyrifera_M_contig75368.17789.1 ID=mRNA_M-pyrifera_M_contig75368.17789.1|Name=mRNA_M-pyrifera_M_contig75368.17789.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig75368:4..576+ (Macrocystis pyrifera P11B4 male)
TTGCGTGATTGTGTAGGGGGTGAAATTGTGATCCTGGATGATTCTGAAAC
TGTCACTGCAGATCGTCTTCGAAATTGTCGTGTGTTTATTGCAGCAAGTT
GCGAAAGTGTGTTTTTGAGGGAATGTCGAGATTGTGTCGTATATGTGGCT
TGCAAACAATTGAGGACACGAGATTGCAGGGATTGTACTGTGTCACTTTA
TTGTAAAACCGAGCCCATCATTGAAACATCTGCAAGGATGCACTTTATGC
CCTTCTTGGGAGCGTGCAAAGGAATTAAGGCAGCGTGGAAGAGAGCAATG
CTTGATGTCTCTTGTGACAAGTGGAACAAGCTCTTTGACTTCAACAAAGG
ACAAGAAGTAGATGGTCTTGTCACTCACTATGACATCCTTCCACAATCCG
AATGGAAAGAATGGGCTATTGGTGGAGAAGATGCAGAACAAGTGAGAGAT
CCAGCCTCACTCCAATCCACACCAACGTCGTTGCCAAAACCTCCTCCCCC
GACATCTCCTCCCCATGATGAAGATGGAATGATGAGTTTCGACATCAGAA
CAGGACAAGCAGCCGCTGAGCAATTGCGTGATTGTGTAGGGGGTGAAATT
GTGATCCTGGATGATTCTGAAACTGTCACTGCAGATCGTCTTCGAAATTG
TCGTGTGTTTATTGCAGCAAGTTGCGAAAGTGTGTTTTTGAGGGAATGTC
GAGATTGTGTCGTATATGTGGCTTGCAAACAATTGAGGACACGAGATTGC
AGGGATTGTACTGTGTCACTTTATTGTAAAACCGAGCCCATCATTGAAAC
ATCTGCAAGGATGCACTTTATGCCCTTCTTGGGAGCGTGCAAAGGAATTA
AGGCAGCGTGGAAGAGAGCAATGCTTGATGTCTCTTGTGACAAGTGGAAC
AAGCTCTTTGACTTCAACAAAGGACAAGAAGTAGATGGTCTTGTCACTCA
CTATGACATCCTTCCACAATCCGAATGGAAAGAATGGGCTATTGGTGGAG
AAGATGCAGAACAAGTGAGAGATCCAGCCTCACTCCAATCCACACCAACG
TCGTTGCCAAAACCTCCTCCCCCGACATCTCCTCCCCATGATGAAGATGG
AATGATGAGTTTCGACATCAGAACAGGACAAGCAGCCGCTGAGCAA
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