mRNA_M-pyrifera_M_contig7534.17784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7534.17784.1
Unique NamemRNA_M-pyrifera_M_contig7534.17784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: D8LKN6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 7.060e-33
Identity = 62/75 (82.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    4 QKSTWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGG 228
            +KSTWKVLPRSIQMHIMKE  D+ FW RLLKDKSLEKTNV IDWNKFVDEDEDE  E FDMSAL+GGS FGG+GG
Sbjct:   62 EKSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGG 136          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A835ZBP3_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.150e-26
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    4 QKSTWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGG 228
            ++STWKVLP SIQMHI+K D D  FW RL KDK+LEK  ++IDWNK+VDEDE++ +  FDMSAL GGSGFGG GG
Sbjct:   63 KESTWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGG 137          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A6H5JGK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.880e-24
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 1
Query:   43 MHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGG 228
            MHIMKE  D+ FW RLLKDKSLEKTNV IDWNKFVDEDEDE  E FDMSAL+GGS FGG+GG
Sbjct:    1 MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGG 62          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A4D9CXJ1_9STRA (CS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXJ1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.240e-23
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 STWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGGM 231
            S WKVLPRSIQ+ + KE+ D GFW RLLKDK LEKTNV +DW+++VDEDE+E + NFDMS L GG  F   GGM
Sbjct:   63 SVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGM 136          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A7S1TUY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUY1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.410e-22
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    4 QKSTWKVLPRSIQMHIMK----EDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGGMP 234
            + STWKVLPRSIQMHIMK    ED +EG WARLLKDK+L+K+ V+IDW+K+ DED+D+ +  FD SAL+GG  FGG GGMP
Sbjct:   67 ESSTWKVLPRSIQMHIMKKEEDEDPEEG-WARLLKDKALQKSFVSIDWDKWQDEDDDDPAA-FDTSALDGGMNFGGAGGMP 145          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A7S0AJF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJF6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.870e-22
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   10 STWKVLPRSIQMHIMK----EDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGGMPP 237
            ST+KVLPRSIQMH+MK    +D DE FW RLLKDK+LEK  V IDW+++VDEDE++ +  FD SAL GG G GG   MPP
Sbjct:   66 STYKVLPRSIQMHVMKATSKDDEDEEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDEAGGFDTSALEGGMGMGG---MPP 142          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A225VTF8_9STRA (CS domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTF8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.050e-22
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 QKSTWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGF 213
            + S W    R++  HI+K+D DE FW RLL DK LEKTNV +DW+KFVDEDEDE  E FDMSALNGG GF
Sbjct:   67 KNSIWAKTDRNLHFHIVKKDQDEDFWPRLLADKHLEKTNVKVDWSKFVDEDEDEEQEGFDMSALNGGGGF 136          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A7R9WMP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMP2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.280e-21
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   10 STWKVLPRSIQMHIMKEDGDE---------GFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGGMPP 237
            ST+KVLPRS+QMHI+K++GDE          FW RLLKDK+LEK  V IDW+++VDEDE+     FDMS L GG G GG GGMPP
Sbjct:  138 STYKVLPRSVQMHIIKQEGDEDKEKDDDEEAFWPRLLKDKALEKNQVKIDWDRYVDEDEEAEEGGFDMSNLQGGMGMGG-GGMPP 221          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A7S1DAL4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAL4_CYCTE)

HSP 1 Score: 97.1 bits (240), Expect = 1.380e-21
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   10 STWKVLPRSIQMHIMKED--GDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGGQGGMP 234
            ST+KVLPRS+QMH+MK D   D  FW RLLKDK+LEK  V IDW+++VDEDE+E +  FDMSAL GG G GG  GMP
Sbjct:   91 STYKVLPRSVQMHVMKRDKSDDSEFWPRLLKDKALEKNQVKIDWDRYVDEDEEEDAGGFDMSALQGGMGMGG--GMP 165          
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Match: A0A7S0C9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.890e-21
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 QKSTWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVDEDEDELSENFDMSALNGGSGFGG 219
            + S++KVLPRSIQM++MK++ DE FW RLLKDK+LEK  V IDW+++VDEDE++ +  FD S L+GG G GG
Sbjct:   65 EDSSYKVLPRSIQMNVMKDNADEEFWTRLLKDKALEKNRVKIDWDRYVDEDEEDEAGGFDTSNLDGGQGMGG 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7534.17784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN6_ECTSI7.060e-3382.67CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZBP3_9STRA1.150e-2668.00HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5JGK5_9PHAE4.880e-2480.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CXJ1_9STRA7.240e-2364.86CS domain-containing protein n=3 Tax=Monodopsidace... [more]
A0A7S1TUY1_9STRA1.410e-2265.43Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0AJF6_9STRA3.870e-2262.50Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A225VTF8_9STRA4.050e-2264.29CS domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A7R9WMP2_9STRA1.280e-2160.00Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S1DAL4_CYCTE1.380e-2164.94Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S0C9D9_9STRA2.890e-2159.72Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7534contigM-pyrifera_M_contig7534:873..8685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog2880.D8LKN6
Preferred nameSBA1
KEGG rclassRC00672
KEGG koko:K10858,ko:K13127,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3158@1,KOG3158@2759
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-03_000990.1
EC5.3.99.3
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Exons5
Model size558
Cds size558
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7534.17784.1prot_M-pyrifera_M_contig7534.17784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7534 873..8685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.5177631-CDS-M-pyrifera_M_contig7534:872..9381622816651.5177631-CDS-M-pyrifera_M_contig7534:872..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 873..938 -
1692278099.4379094-CDS-M-pyrifera_M_contig7534:872..9381692278099.4379094-CDS-M-pyrifera_M_contig7534:872..938Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 873..938 -
1622816651.5301838-CDS-M-pyrifera_M_contig7534:1731..17991622816651.5301838-CDS-M-pyrifera_M_contig7534:1731..1799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 1732..1799 -
1692278099.451946-CDS-M-pyrifera_M_contig7534:1731..17991692278099.451946-CDS-M-pyrifera_M_contig7534:1731..1799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 1732..1799 -
1622816651.5405161-CDS-M-pyrifera_M_contig7534:4297..45491622816651.5405161-CDS-M-pyrifera_M_contig7534:4297..4549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 4298..4549 -
1692278099.4609923-CDS-M-pyrifera_M_contig7534:4297..45491692278099.4609923-CDS-M-pyrifera_M_contig7534:4297..4549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 4298..4549 -
1622816651.5520215-CDS-M-pyrifera_M_contig7534:6720..67961622816651.5520215-CDS-M-pyrifera_M_contig7534:6720..6796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 6721..6796 -
1692278099.471056-CDS-M-pyrifera_M_contig7534:6720..67961692278099.471056-CDS-M-pyrifera_M_contig7534:6720..6796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 6721..6796 -
1622816651.566507-CDS-M-pyrifera_M_contig7534:8589..86851622816651.566507-CDS-M-pyrifera_M_contig7534:8589..8685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 8590..8685 -
1692278099.482176-CDS-M-pyrifera_M_contig7534:8589..86851692278099.482176-CDS-M-pyrifera_M_contig7534:8589..8685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7534 8590..8685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7534.17784.1

>prot_M-pyrifera_M_contig7534.17784.1 ID=prot_M-pyrifera_M_contig7534.17784.1|Name=mRNA_M-pyrifera_M_contig7534.17784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
LQKSTWKVLPRSIQMHIMKEDGDEGFWARLLKDKSLEKTNVTIDWNKFVD
EDEDELSENFDMSALNGGSGFGGQGGMPPGGMGGMPPGGMGGMGGMPGMG
GMGGMPGMGGMGGMPGMGGMGGAGGEGGMPAGMAEMMAKMKAGGGMMGAG
GEGDYEDEDDDDDEPDSDDEGLPDLEDDDDAQPDK*
back to top

mRNA from alignment at M-pyrifera_M_contig7534:873..8685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7534.17784.1 ID=mRNA_M-pyrifera_M_contig7534.17784.1|Name=mRNA_M-pyrifera_M_contig7534.17784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7813bp|location=Sequence derived from alignment at M-pyrifera_M_contig7534:873..8685- (Macrocystis pyrifera P11B4 male)
TTGCAGAAGAGCACGTGGAAAGTCCTGCCTCGCAGTATACAGATGCACAT TATGAAAGAGGATGGGGACGAGGGATTTTGGGCACGACTTCTCAAGGTAT GGAGTACGGGGCTCGTGGAGTTTTTCATGTTTTTGTGTGTTTGTGATATG TAGGGAGAACGGGGATGATAGGGTGGGCGATATTTAAGAGCGCTTTGATC GAAATATGACACCAAAGCTTGCAAATATGAGCTTTGAGCAGATTTTCGAT CTCGCAGCTTTACGTGTTTTCAAGTTTATTCCGAGTATATTTTTGTGTTG TTGTCTCGCTGCGTGCTTTGTTGGTTTTTTTTTTTATGTTTCTGCGGGTT TTTGAGGTGTTGTTAAACGTGTTTTTAACCCTTCACACCCAAGTTTCAAG TAGTTTGCCCCCAAAACCGTTTTCGGGACGAATGTGACTCAAACTATGAG TAGTGTGTCCCCAAAACCGTTTTGGGGACGAATGACTCAAATTATAAGTA GCTTGAACCCAAAACGGGACTGCACTCCTAAAGGATGAAAAAAAAAATCC CGTTTTTCGAAGCTTATTGTTGTTGTGATGCTGTTTGTTGTGCCTTTCGT GTGATGCTCCTTCCCATCCCTAACATTCGTTCGGGCTGAAGGCCGTCCCA ACGCGTTCATTTGTTTCCCTGCTATCACGGATGACCATGGTGATGAGGAC CCAATTCGTCGGTAAAAAATACCGGAGTATATAGGTTTTGGTGTGTATGA CGGGTCCTGATCACTATGGTCCTCCGTAATAGTGTCAAAATCGCTACTGT AATTCTGTACGACAAGTTGCGAAGTGGCGTGGTGTGATTTGCCCTGCTCT CGTTTTTTTTTGTTCAGACAAAGCACGGACATGTTGCACGAAGTACGGCT ACCAGGTATGTTCTAGACGGCTCGCAGAAAAGAAAAAAAAAAAAGAACTC GGAGCAACCGCCCTTTGGAGATTGAGGGTGCACCATACCGATACTTGCGC GTTTTTTTTTTTTTTTGTTCGCGTGGCATCGAAAAAAGTTGATGTGCCGC TCGCTGCTTTCTTTGTCCGGGTTTCAAAAAGTTGGCCGGTGCCATGAGGC CGAAGTGTCTCGCGGGAAACTCTTCTTGGATCAAGCACCGTTTTTGTTAA GTCATATATCCGCACCTTTTCAGTCCCGTCCAGATACGTAAGCGGCGTAT AAACTGATGATGGCAGCTTTCAATCCGTTTTTTGTTGTTGTTGTTGAGGA AAACACGTCATGTTGTCACCGCTCTTGGAACAAGTTTTTACTGTTAAACT CTACACAACCCGCGTTGTAGCGTCCTTGATCACGCCGGCTCACAGAACAA TGTCCTTGCACGCGACCCAAATGATGCGCTGGCTGTGCGTGTGGGAGTCT TTTTTTTTTTTTTTTTTTACGAAATATACCTGAGAAACTAGTGGTACTCT TATTCCGTGTTGATTTGCCACCCGAACCGGGGGGGGGAGGTTGGGCTGCA TCAATGAACGAAAAATGCGGAAAAGTACCAGGTAACTATAAACCCCTTCA CCGAGCATTTTACAACTGCATGCAACCCATGACTATTTTACGGTAGTGAC AGACTTGTTGGAATCCGTGTGGGATAGTTTTCGCAGTGGTAGACGAAAAT AACGTGATCGTGCGGCATCTTCGTTGTGTCATGATTTTTTTTTGTTTTAT ATCCATGTTTTTCCCCGTGATTAATTTTAGTGAAGAACTACTTGGAACTA GTGTGGGATCGTTTTCGCAGCGGTAACGAGAAAATGACGTGATTGTGCGG CATTTCTTGAGTCAACGTTTTTTTTTCGAATGTTTCCATGGTTTTTTTGT GTGATGTGATGGTTGATTGATGATTGCTGGCTCGCGCAGGACAAGTCCTT GGAGAAGACTAACGTGACGATCGACTGGAACAAATTCGTCGACGAGGACG AGGATGAGCTATCAGGTAAATCGTGTTCGAAGCAGCACGCGGCTTAGAGA GGGAGGGGGGGGGGTGTACTCGATATCATTCATGCATGTCTCGAAGTCGT ATGGCCATATAGACCCTCGCATCCCTTCAATGCCTGGACGGAGCACGTCG GGTTTCCACCGACCAGACGGACATTGCTTACACCGAAAAGAGGGGGGGGG GGCGGGGGGCTGCCAAGCTGCCATTATAGCTTTTAGCACTCTTACAACCT CTATGTATTGTAGAGAAAAAAACGGGGAAATTACCACATGTGAACATCAA TTTGGTCATTTTTCGTTTTTTTTCTGATAGGAATCGTATTCCTTTTACAT AATTAATAGCGAAAACGGAGGAAATCAACACATGTGAATAACAAAGTGGT ATTTTTTTATATTGTTTTCTTCTGGTGGAATCATTCGTGGCCACCGTTTT CTAATCGTATATCCTCCATGCTATGCATATGTATATACGCGTTGTGTAAG GGCCGTTTTTAACGACACTTTTTGGCCAAAATGAAAATTTGGATCTTCAG GTCTTGCCAAAAACTTGCCAAATGGAATGGCAAGCCCATAATTCCATATA GACTTGCAAACGAAAGGTTTGGGGAATACCCGTAAAAAAAGGCTTGCTAA ATTGGCAAATCCAAATTTTCAAAAACTTGGCCAATTTGGCAAGTTTTTGC CGAATAAGTGTCGTTAAAAACGGCCCTATACACACACGATGGCCACAAAA TATTCCCCGGTATTCTCTACGTTATCCTCCATGCTGTATGGGTCGCGTAA ACCTCACGGTGATGACTGACTGTAGGATTAAATATTCCCCGTTTTAGGTG TTCGTACCCTTCTTGTTCTACAGCAGCATCGGCCCTCTCGCGGGAAACAC ACCCTCTAAGAAACCTAGCCTAGATTTTTTTTTTTTTTCCACGTCAGATT GAGAAAGTTTGTAGCCTACATACAGCAGTAGGCGCTCGCCGTCTATATTT CTAAGACTGCAAAAAAACAACAGCTGTTTGATCGAGGGTTTCGTCGTACT TCGATCGCGCATACTATTACGGGGGACCATAGTAAATAGAACCAAATATT GTTAGTAAAAATAGGTAAATGTATAGGTTCTATGTACACCATAGGTCCTA TTAACTATGGACCTCCGTAATAGGGGTTTTAGATGACCTTACGCGGAATA TACAGTCCGTGTATGAGAAAGACAAAATCGGAAGCTGCAGAAGGCAAGGA GTGGGTGTGTCTATATTTGGGATTATATGGAAGAGACCCCATTCTCGCTT AAGGGTGCAGCCTACAGCCTACAGCGTACAGTTGGATGCCAGATTTTTTT CCACCAGGGCCGATATTGCGTTGGACAGATGATGTACAGGTAGATCATTT ATAGATAATAGACCATCTAGAGGCTTAAATGGCGTTGTGGGATATTGTGG AGGATCTGCGTTGTACAGGTCGAACACAGCGAATATATGTCCGACTGCAG ATCATGCAGATTAGACGGGGTTCCACCCGGCAACATGAACTACGTAGATC ATACAGGTCAGGAGTATATATGTCTGTCCTAAACGATCTAGATCATTATC TTTTATCTGTACACGATCTGTAGACGGTCTGTATGATGTGTGCCAGATAA CTTTTCCCGTTTTTTGTAGGTTATCCTCAATACCAGGTATATATTGTGCG TCGTCTAGACCAAGTTTTGGCGGGCACAATATTCCGCGTTTTCTCTGCGT TTTTCCTCCCTGTTTTACGCGTCGTGTCTTACCGTCGTTTGAATATACCA CTGTTACGGAGGGCCATAGTAAATAGGATCAACGGTACACACAAAAACCT ATATATTCAACTATTTTTACTAACCATATGTGGTCCTATTAACTATGGTC CCCCGTAATAGTCCGATTTGTATGATTTTTTTTTTTTTTTTTTTTTTAAT GTGTGTTTCGTGTTCTCATGCGTCGTGCTGTCGGTCATAGCATTCAGCTC TAATCCCAAGCGCAGTAGGTTGGTTGCCCTGAAGCGCGTGATTGCAGTCG TAAACGGGCTAATATATAGAAACTGAACTCATCATCCGCTTTTTTTTGCT GTGGCGTCCCGTTCCTGCCCGTCCTGTCGTGTCGTGTCCTGTTTTTTATT CCGCTGGCCTCTCGTGGGTGGGGTGACTCACATCAGAGAATTTCGACATG AGCGCACTGAATGGCGGCAGCGGCTTCGGAGGACAGGGGGGAATGCCCCC TGGCGGTATGGGGGGCATGCCTCCCGGGGGCATGGGAGGGATGGGTGGCA TGCCCGGTATGGGAGGGATGGGAGGCATGCCCGGTATGGGAGGGATGGGA GGCATGCCTGGCATGGGGGGGATGGGGGGGGCGGGGGGTGAAGGAGGTAT GCCGGCGGGCATGGCAGAGATGATGGCCAAGATGAAGGGTAAGCATAAAA AATGCCCCGTGTGCTTTCTGAACTTGCAGTTGTACGTATGGTATGATCGC CGGCAAGAGGCAGGTGAAGGGGTGTGCATGTAAAAGGCGGGGTACTTTTG GAACAGTTGTATGCCAGGAGCCAGCCGACAGCGGTACGATGCCCGAAACT GTCGGCCCCTGACACCTGACATCGTTGTTGGAAAAAGGCGCACGGCTTTC ATGCGCACCCCCTTTCGATCTCTGTCGCCGATCGTGTGTAAGTAGTTGAG ACGTCTCGCCGACTAGAATTACACCAAACCTAGTTTTTTTACGATGTCTA GACGATCGTTAGTCACAGGCCTGAACTGTCGTCCCCTGCATATTTTTTCG TTCGTGAACGGCCTGTTGTACGTGTGATATCATGGGCATTCGTCTTGGTG GGTTGAAAGGCGAAGCGGGGCAGAATCCGAATCACTGTGTGGTGTCGGGT GCTTTGTGTTTCCTCCACAATATACCGGGTGTATCCCTAAAAGTAGGTGT ACCTGGCTGGGTACCTTAAGGTATATTCCCGGGTATCCTCCGAGTATGTA CCCAAGCGGTACCCGGGTATATACCCTAAAACCACTCTCCTCCGTACCTC GAAGTATCTACCGGAGTGGATACCCGGCTACCATGCTTAACATTGCCGGG TATTCTCGAGGGTTAGACATTCCCGGGTATACTGGGGAGCCCTCAAAACA TGTACCCTACTTGAAGCACCACCTTTCTGTATACTGTAGAATGTTGTAAT GCTGCCGCAGGGAGAGTAGAGTATACTACCCAAGCTGTACCCGGATACCC TCAATTTTACTCCCGGGTATCCTCGAAAGTTTATACCGGGGTGGGCACTC GGAAACCTTAACTTGGGTACTCTTAGTGCTGGCGTGGGCGTGAAGACGTC CGCCGAGAGCTCTGTGAGCGAGGCTTGGGTGTGTTGGTATTTTCCGGGGC TGTTCACGGGTCAAAGAGGTGTTCAAAATGTCACGGTCGGGTCGGGTCGA GTCAAGGGGTTTTTTAATATGGCGGGTCGGGTCGGGTCGGGTCAGGAGGT GTTCAAAGGCTCACGGGTCAAATTGGGTCGGGTCAAGAGGTTTTCATGTC TCACGGGTCGGGTTGGGTCAGGAGGAGGTTTTCCAATCTCACGGGTCGGG TCGGGTCGGGTGTGGTCGGGTTCCAAAATCTCGCGGGTCAGGTCGTGTTC AGGTCAAGGTATCTAAAAAAGATCGCGGGTCGGGTCGGGTGTTGGGTTGA GTCAGCTGACCCGATCCCACCCGACCTGGCCCGTTAGGTTTGATCCGACC CGCGAACAGCCCTGGTGTTTTCGGATCACACAATTCTGCGGGGTCGGCGA AAGTTGGTCAACGTATTGTGTTTTCGTTTTTTCTAGTACGGTAATATCGT AAAACTTGGGTGTATGCACACCTAACGCTCCTGAGCTCGCACAGCAGTCA GATTTTGTTCCCCCTCAACAAGGAATATGTGATACGCCCTTCATGAGGTC AGATAAGAACCGTAATACGCGCGCACAGTCGAGGAATCATGTAAATATAT GCAGCTTGCAAAGATGGGCCTCGACGAAATCCTCGATTTCACACAGCTGA TGTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTAGTATGTGTGGACTGGTG TTGTGGTGTGGACGTGGCATGTGTATCCCAACAATCCTCGCCTTGAATTT TTTGGCGGGATAAAATACTGCATCTGTGCGCAGAGTGGTTGTCGATCAAA CTCAACTACCGGTATTTTCCAAGCTGCCCCTCTTGCGTGTCACCCAGCAG GGGAGTGGGTTGGGTTGGAGTCGTGTTGTCCAGTTTTCCTGAGTTCTTGA GTGAAATCACGGGGGTCGATTGCTTCACGGTCCTTTGCTGCAACGGCGGC TATTTTTTCTCGCTTCTCGCGTTACGCACATCGCGTGTCACGATTAAAGA TGCGGCGTGGGGCACACTCTGTTTTTTTTCTCACAGCTGCGACTTTATCT GGGAATACAAGGACCGTTCAATTGAGCATCCATACGATATCGTCACCCGA AACGGCCCTTCAATTTACGGACAGCAGTAGTATCTCTTATTTGTCCGCGA CCATCGCAGGATTGTCTCTCTCCGGCTGTACACCGTATGTTGGTCACGGA CGGCAACAAGGCATATGCCGGAAATACACATACGAGGACTCCCTCCCCCT CCACCCTCAAACACGACCCTCATCAACCCCCCCCCCCCCCCCCCCCCCCC CCCACCCCCCCCCTCACCCCCCCCCCCCCCCCCCCACCACTCTCACTACC ACCACCGCCTTCACCCCCACCACCACGGCCACTGCTCTCTCCCCCAACTG TCACCACCTGCACCCGCCACGCCACCGCCGCTATACAACTCCCGTGCGCT AAAACCTTCCTGCCTTTTTTTTCTCTTGATCTGCTGCTGCTGTGTTTGTG CGTGCGTGTGTTGGGTGTTTTTGTCGGCGATGGCAGCTGGCGGAGGAATG ATGGGCGCTGGTGGCGAGGGTGATTACGAGGACGAGGACGATGATGACGA CGAGGTATATATATATATATATGCATATTGTTTTGTTTCCCTTCTATGAT GCTGAAAAAAAAACTCGTACTACTGTAGGTTGGTTGATTCCTATTTTCGG CCCGGGGCTCAAGTTCTGAACATTTAGCTACCGTGGATTATGACGATAGG TTGAGGTGAGAACAACGGTAACAACATACTTCGGAGTATCTTTTATTTTC GGTCCGAGTCTCAAATTATTACCCCAACTTCGTATATCTCTCATTTTGGG GAATTTCATGGTGCCCCCACGGGTGGTTCCAGCATTATTATTGAATTAAA AACGACAGCTGTGAGACCGGACTTTTTTTTTTTACGCCCAAATCTTAACC CTATCCCAACCCCTGCCCTGCCGGAAGGAGCTGTGTATGGCGAAAATCCG ACAAAACAGAATATATCAACAGAATGCTCGACCTATTTGAAAATGACTTC CAAAATTGCTGTGTAAAACTGACTTTCTTTGACAATTAGCTCTATATGCC ATGTATTGCCTTTCCGATCCTGTCTCTGTATAGCCGTTGCCCTTTCAACC AATCCTGTCTCTGTATAGCCGTTGCCCTTTCAACCATCTCTGTACGTGAC CGCTATTCCATGTAGACCCTCTATTTATATGACTGTCGCTCTTTTGACCT TTCGCGAGACCGTTGCCCTTTCGTCCTTCTTTATGGTCGTTTCCCTATAT ATTATCGTTGCCCTCTCGACCCTCTTTATATGACCGTTGCCCTTTCGACC ATCTCTTCGTCCCCCGTGCGCGATTGGCTCGTCTCCGGTTTGCGCAGCCG GATAGCGATGATGAGGGTCTACCCGACCTAGAGGATGATGACGACGCGCA GCCAGACAAATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7534:873..8685-

>mRNA_M-pyrifera_M_contig7534.17784.1 ID=mRNA_M-pyrifera_M_contig7534.17784.1|Name=mRNA_M-pyrifera_M_contig7534.17784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig7534:873..8685- (Macrocystis pyrifera P11B4 male)
TTGCAGAAGAGCACGTGGAAAGTCCTGCCTCGCAGTATACAGATGCACAT
TATGAAAGAGGATGGGGACGAGGGATTTTGGGCACGACTTCTCAAGTTGC
AGAAGAGCACGTGGAAAGTCCTGCCTCGCAGTATACAGATGCACATTATG
AAAGAGGATGGGGACGAGGGATTTTGGGCACGACTTCTCAAGGACAAGTC
CTTGGAGAAGACTAACGTGACGATCGACTGGAACAAATTCGTCGACGAGG
ACGAGGATGAGCTATCAGGACAAGTCCTTGGAGAAGACTAACGTGACGAT
CGACTGGAACAAATTCGTCGACGAGGACGAGGATGAGCTATCAGAGAATT
TCGACATGAGCGCACTGAATGGCGGCAGCGGCTTCGGAGGACAGGGGGGA
ATGCCCCCTGGCGGTATGGGGGGCATGCCTCCCGGGGGCATGGGAGGGAT
GGGTGGCATGCCCGGTATGGGAGGGATGGGAGGCATGCCCGGTATGGGAG
GGATGGGAGGCATGCCTGGCATGGGGGGGATGGGGGGGGCGGGGGGTGAA
GGAGGTATGCCGGCGGGCATGGCAGAGATGATGGCCAAGATGAAGGAGAA
TTTCGACATGAGCGCACTGAATGGCGGCAGCGGCTTCGGAGGACAGGGGG
GAATGCCCCCTGGCGGTATGGGGGGCATGCCTCCCGGGGGCATGGGAGGG
ATGGGTGGCATGCCCGGTATGGGAGGGATGGGAGGCATGCCCGGTATGGG
AGGGATGGGAGGCATGCCTGGCATGGGGGGGATGGGGGGGGCGGGGGGTG
AAGGAGGTATGCCGGCGGGCATGGCAGAGATGATGGCCAAGATGAAGGCT
GGCGGAGGAATGATGGGCGCTGGTGGCGAGGGTGATTACGAGGACGAGGA
CGATGATGACGACGAGCTGGCGGAGGAATGATGGGCGCTGGTGGCGAGGG
TGATTACGAGGACGAGGACGATGATGACGACGAGCCGGATAGCGATGATG
AGGGTCTACCCGACCTAGAGGATGATGACGACGCGCAGCCAGACAAATAA
CCGGATAGCGATGATGAGGGTCTACCCGACCTAGAGGATGATGACGACGC
GCAGCCAGACAAATAA
back to top