prot_M-pyrifera_M_contig7532.17779.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7532.17779.1
Unique Nameprot_M-pyrifera_M_contig7532.17779.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length202
Homology
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BLAST of mRNA_M-pyrifera_M_contig7532.17779.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.520e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0 
Query:   26 MVLKHAQVVGQDRVKRGAYLAGLADGPSVAQDLGLSPKDRLIAVEGLEVQTLSFDRIVGLIRKATFPLSLVWSRQRKGDAVTSLPGTAIAGQQRSVD 122
            MVLKHAQV G++R+KRGAYLAGLA+GPS+AQDLGLSPKDRLI VEGL+V+TL FDRIVGLIRKATFPL+LVWSRQRK     +  G A +   R  +
Sbjct:    1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGIAATSKGRAASRASREAE 97
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BLAST of mRNA_M-pyrifera_M_contig7532.17779.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 9.200e-36
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 0 
Query:    7 QWDRFEVALSKPSGRQKLGMVLKHAQVVGQDRVKRGAYLAGLADGPSVAQDLGLSPKDRLIAVEGLEVQTLSFDRI 82
            QWDRFEV LSKPSG QKLGMVLKHAQV G++R+KRGAYLAGLA+GPS+AQDLGLSPKDRLI VEGL+V+TL FDRI
Sbjct:   23 QWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7532.17779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYS1_ECTSI2.520e-3871.13PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KV99_9PHAE9.200e-3684.21PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 1..107
e-value: 3.9E-10
score: 41.6
IPR001478PDZ domainPFAMPF00595PDZcoord: 13..95
e-value: 7.7E-6
score: 26.2
IPR001478PDZ domainPROSITEPS50106PDZcoord: 12..101
score: 12.365
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 6..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7532contigM-pyrifera_M_contig7532:448..10546 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7532.17779.1mRNA_M-pyrifera_M_contig7532.17779.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7532 448..10546 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7532.17779.1 ID=prot_M-pyrifera_M_contig7532.17779.1|Name=mRNA_M-pyrifera_M_contig7532.17779.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=202bp
QSQSAVQWDRFEVALSKPSGRQKLGMVLKHAQVVGQDRVKRGAYLAGLAD
GPSVAQDLGLSPKDRLIAVEGLEVQTLSFDRIVGLIRKATFPLSLVWSRQ
RKGDAVTSLPGTAIAGQQRSVDSSPLPSPCPPPAAGGSSASAADADGAAT
AAATAAPSATDWIQATNRGRAASRIVREAEGMGGGEGLGTSRASALDVEQ
QV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf