mRNA_M-pyrifera_M_contig75287.17776.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75287.17776.1
Unique NamemRNA_M-pyrifera_M_contig75287.17776.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A5A8DTD7_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTD7_CAFRO)

HSP 1 Score: 87.4 bits (215), Expect = 5.450e-17
Identity = 54/164 (32.93%), Postives = 86/164 (52.44%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFG-----TRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIV 477
            VNGR +D  ++SFNFFS+L+T++ EA++L     LP+   +  AL  L+       +        +D + +        RV+ R GA   V W ++VEKD   ++  A++RA+ +     +  VR+N+YT + L D S P  LRA+L      Q  LP++ G V
Sbjct:  506 VNGRQIDATASSFNFFSVLRTLQDEASVLSQFASLPIAEQEVLALRALAAGTKGAEADGDDGAASADPVSEAEGGSPTLRVDYRSGADDCVVWLSDVEKDAQFRRMRASVRALLTQTWQLHQ-VRRNLYTAVLLGDASSPGGLRAILTALYFVQNALPIKFGFV 668          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A7S2KG80_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KG80_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.160e-16
Identity = 57/172 (33.14%), Postives = 86/172 (50.00%), Query Frame = 1
Query:   16 VDVMSTSFNFFSLLKTIRAE----AAILDNVKQLP--LGSSDSRALL--------QLSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVP-VRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIVLAS 486
            ++V  TSFN F LLK +R E    + +   +  LP      D  ALL        QL  S   N           + +     R++V  G++G + + NN+EKD     WP  + AM  +  GG  P VR+N++T+L ++DP  PS  R LL  A + Q N P++LGI++A+
Sbjct:    2 INVSRTSFNVFELLKVLREENEKISRLESRLDDLPSIAAKKDVIALLEGGEETLEQLGKSWDDNVIEDDPSYEMLNPI-----RIDVARGSKGAITFINNIEKDDDFAHWPPQIIAMIQAAQGGGPPTVRRNLFTVLIVMDPLNPSHYRPLLVMAQLIQSNFPIKLGILIAN 168          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A7S2RIH0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RIH0_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.040e-12
Identity = 54/166 (32.53%), Postives = 83/166 (50.00%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQ-------LSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIV 477
            VNG SVD+ S SFN F +L TIR EA      K++ L +S +  ++Q                  XXX       L   G R+++R GA+G V + NN+EKD   + W  +++ +        +PVRKN+YT + +++P+  +S  A+       Q+  PVR G V
Sbjct:  416 VNGISVDMESESFNIFGVLHTIRKEATYQSQAKKVGLPASRASEMVQEMANRFDAEDXXXXXXXXXXXGAAADRVLKAAGQRLDLRDGAKGAVVFVNNIEKDSRYRSWSRSVQMLLRQSYQ-LIPVRKNMYTSIIVINPASEASRSAMATVLDFIQRGAPVRYGFV 580          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: B8BRK2_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRK2_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-9
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMA-SSPMGGYVPVRKNVYTLLFLLDPSKPS--SLRALLQGAMMTQQNLPVRLGIVLAS 486
            VN R VDV   SFN F LL+ +R E     N++    G+              S  +        S +   +  R++V  G +  + + N++EKDP  + WP ++  M   +  GG   VR+N++T+L +LDP   S  SL A+ Q   + Q + P+R+G+++ +
Sbjct:  230 VNSRMVDVERPSFNVFQLLEVLREED---QNIEVCSQGNG-----------YGSRQADTNGKEGRSSSKKKY--RIDVGRGGKNAILYLNDIEKDPDYQSWPTSMEQMMYRAQFGGAPTVRRNLFTMLIVLDPVSGSHPSLEAVAQ---LLQSHFPLRVGVLMVN 375          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A7S0NGR9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NGR9_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 2.180e-9
Identity = 52/162 (32.10%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVPV-RKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIVLA 483
            +NGR + +     +   LL+TIR E   +D +  L L  S +R LLQL                     P    R++ +  A  V+   N+V KD    QWP T+R +    M G +   RKNV+T++F++DP+    L AL     + QQ  P+R G+VLA
Sbjct:  416 INGRELPIGEN--DLAGLLQTIRRELHTVDALGFLQLPISTTRKLLQL-------------------PAPSTSLRIDAKHPAVFVL---NDVAKDKRYAQWPPTVRELLRPNMWGQISFCRKNVFTMVFVVDPATEDGLAALGYMGSLFQQGAPIRFGVVLA 553          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: L8H1D6_ACACA (UDPglucose:Glycoprotein Glucosyltransferase containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1D6_ACACA)

HSP 1 Score: 65.5 bits (158), Expect = 2.300e-9
Identity = 48/163 (29.45%), Postives = 75/163 (46.01%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPG-ARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIVLAS 486
            +NGR++   +   + + L + I+ E + LD +    LG  DS  LL L PS    T +        +  P  GT     P    G +Q+ NN+EKD     WP     +     G    ++KN+ T++ ++DPS P  L  +     M +Q LP R+G V +S
Sbjct:  380 MNGRNL--AADQLSPYVLYEFIKDELSKLDALSVFGLGRKDSEKLLSLVPS----TPTIRFDLRDREVFPSGGTPATDDPNNVNGAIQFANNLEKDAMYGHWPGIHALLQPVYPGQMRYIKKNIQTMILVIDPSSPQGLSVIGNFLYMLRQGLPFRVGFVFSS 536          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: K0R168_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R168_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 2.310e-9
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQL----------PLGSS-DSRALLQLSPSLTSNTSSXXXXXXX-SDALPD---FGT---------RVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMAS-SPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIVLAS 486
            VN   VDV   SFN F LL  IR E   L  ++             LGSS D + LL +  ++              S A+ +   +G          R++V  G +  V + N++EKDP  + WP++L+ M   S  GG   VR+N++TLL ++DP+   +  +L   A +    +P+R+G+++ +
Sbjct:  478 VNSNPVDVERPSFNVFQLLSVIREEDKKLRELESRVRPVLKFASESLGSSSDWKTLLAVRNAMDMGMDKLKQIGNNLSGAMVESELYGDKELPVSKKYRIDVGRGGKNAVLYLNDIEKDPEYRSWPSSLQEMLMRSQYGGAPTVRRNLFTLLVVMDPASGVAQPSLSVAAQLMNSQVPLRIGVLIVN 664          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A7S4IYF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYF5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.320e-9
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  223 RVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMAS-SPMGGYVPVRKNVYTLLFLLDPSKPS--SLRALLQGAMMTQQNLPVRLGIVL 480
            R++V  G RG V + N+VEKDP   QWP +++ M   S  GG   VR+N++T+L ++DP+  S  S R L     M Q N P+R+G ++
Sbjct:  701 RIDVGRGYRGAVMYVNDVEKDPQYSQWPRSVQQMMMMSQYGGAPTVRRNLFTVLLVVDPTDASKGSARTLEVMVQMVQSNYPLRVGFLI 789          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A0L0DQA5_THETB (UDP-glucose:glycoprotein glucosyltransferase 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DQA5_THETB)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-9
Identity = 52/163 (31.90%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFGTRVE-VRPGARGV--VQWFNNVEKDPSTKQWPATLRAMASSPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIVL 480
            VNGR VDV STS   F L   +  E  + D ++ L L      A+                    S A P+ G   + VR     V  + + NN+ +D     WPA++ A+ + P  G+  VR+NV TLL+++DPS P+SL  + Q       + P+R G+VL
Sbjct:  372 VNGRVVDVSSTSI--FQLYTLVGEELVLADKLRSLGLAPEHVAAVA-------------------SAASPNQGASGDSVRVAVTEVKHIAYLNNLARDEQYASWPASI-AVITQPTYGFHRVRRNVVTLLYVMDPSSPASLGVVFQLMQFHSGDAPLRFGLVL 512          
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Match: A0A0C3Q9H6_9AGAM (Glycosyltransferase family 24 protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3Q9H6_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 4.250e-9
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    1 VNGRSVDVMSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSSXXXXXXXSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAMASSPMGGYVP-VRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGIV 477
            +NGR V    T  N F+LL+ +R E  ++D + +  L  S++  +L   PSLT   S+        DA          R    GV+ W N++EK+    +WP+TL  +      G VP +R+N++ ++  LD SK +S+  L     + Q+  P R GIV
Sbjct:  404 LNGRPVQ--PTDMNPFALLRLMRKERQLIDQLTKAGLSRSEAIEVLT-HPSLT-KPSAGQLLEGIFDASD--------RKDGGGVIIWLNDLEKEERYSRWPSTLDTLMKPSYNGQVPPLRRNLFNIILALDLSKTTSVSTLNLVTSIVQRGYPFRFGIV 551          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75287.17776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DTD7_CAFRO5.450e-1732.93Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S2KG80_9STRA3.160e-1633.14Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2RIH0_9STRA1.040e-1232.53Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
B8BRK2_THAPS1.730e-929.09Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S0NGR9_9EUKA2.180e-932.10Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
L8H1D6_ACACA2.300e-929.45UDPglucose:Glycoprotein Glucosyltransferase contai... [more]
K0R168_THAOC2.310e-928.88Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4IYF5_9STRA2.320e-940.45Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A0L0DQA5_THETB3.100e-931.90UDP-glucose:glycoprotein glucosyltransferase 1 n=1... [more]
A0A0C3Q9H6_9AGAM4.250e-931.25Glycosyltransferase family 24 protein n=1 Tax=Tula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75287contigM-pyrifera_M_contig75287:173..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog159749.K0R168
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UDP-glucose:Glycoprotein Glucosyltransferase
EggNOG OGs2XFNQ@2836,KOG1879@1,KOG1879@2759
COG Functional cat.G
CAZyGT24
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size486
Cds size462
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.1282187-CDS-M-pyrifera_M_contig75287:172..6341622816651.1282187-CDS-M-pyrifera_M_contig75287:172..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75287 173..634 -
1692278099.2376132-CDS-M-pyrifera_M_contig75287:172..6341692278099.2376132-CDS-M-pyrifera_M_contig75287:172..634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75287 173..634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816651.139536-UTR-M-pyrifera_M_contig75287:634..6581622816651.139536-UTR-M-pyrifera_M_contig75287:634..658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75287 635..658 -
1692278099.2502906-UTR-M-pyrifera_M_contig75287:634..6581692278099.2502906-UTR-M-pyrifera_M_contig75287:634..658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75287 635..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75287.17776.1prot_M-pyrifera_M_contig75287.17776.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75287 173..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75287.17776.1

>prot_M-pyrifera_M_contig75287.17776.1 ID=prot_M-pyrifera_M_contig75287.17776.1|Name=mRNA_M-pyrifera_M_contig75287.17776.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
MSTSFNFFSLLKTIRAEAAILDNVKQLPLGSSDSRALLQLSPSLTSNTSS
PSSSSSSSDALPDFGTRVEVRPGARGVVQWFNNVEKDPSTKQWPATLRAM
ASSPMGGYVPVRKNVYTLLFLLDPSKPSSLRALLQGAMMTQQNLPVRLGI
VLAS
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mRNA from alignment at M-pyrifera_M_contig75287:173..658-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75287.17776.1 ID=mRNA_M-pyrifera_M_contig75287.17776.1|Name=mRNA_M-pyrifera_M_contig75287.17776.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig75287:173..658- (Macrocystis pyrifera P11B4 male)
GTCAATGGGAGATCTGTGGATGTGATGTCAACATCTTTCAATTTCTTCTC CCTCCTCAAAACCATTCGAGCAGAAGCTGCAATTCTTGACAACGTCAAGC AACTTCCATTAGGATCATCAGACTCTCGTGCTCTCCTCCAACTCTCCCCA TCTCTCACGTCCAACACCTCTTCTCCCTCCTCCTCCTCCTCGTCTTCCGA TGCACTTCCTGATTTCGGAACTCGTGTAGAGGTTCGCCCTGGTGCTCGGG GTGTAGTGCAATGGTTCAACAATGTGGAGAAGGACCCTTCTACAAAACAG TGGCCTGCGACGTTACGAGCAATGGCATCTAGCCCCATGGGAGGGTATGT GCCTGTGCGAAAGAATGTCTACACTCTTTTGTTCCTCTTGGATCCTTCCA AACCCTCATCACTGCGTGCTCTCTTGCAAGGTGCAATGATGACACAACAG AATCTACCAGTCCGTCTTGGAATTGTACTTGCAAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75287:173..658-

>mRNA_M-pyrifera_M_contig75287.17776.1 ID=mRNA_M-pyrifera_M_contig75287.17776.1|Name=mRNA_M-pyrifera_M_contig75287.17776.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig75287:173..658- (Macrocystis pyrifera P11B4 male)
ATGTCAACATCTTTCAATTTCTTCTCCCTCCTCAAAACCATTCGAGCAGA
AGCTGCAATTCTTGACAACGTCAAGCAACTTCCATTAGGATCATCAGACT
CTCGTGCTCTCCTCCAACTCTCCCCATCTCTCACGTCCAACACCTCTTCT
CCCTCCTCCTCCTCCTCGTCTTCCGATGCACTTCCTGATTTCGGAACTCG
TGTAGAGGTTCGCCCTGGTGCTCGGGGTGTAGTGCAATGGTTCAACAATG
TGGAGAAGGACCCTTCTACAAAACAGTGGCCTGCGACGTTACGAGCAATG
GCATCTAGCCCCATGGGAGGGTATGTGCCTGTGCGAAAGAATGTCTACAC
TCTTTTGTTCCTCTTGGATCCTTCCAAACCCTCATCACTGCGTGCTCTCT
TGCAAGGTGCAATGATGACACAACAGAATCTACCAGTCCGTCTTGGAATT
GTACTTGCAAGTATGTCAACATCTTTCAATTTCTTCTCCCTCCTCAAAAC
CATTCGAGCAGAAGCTGCAATTCTTGACAACGTCAAGCAACTTCCATTAG
GATCATCAGACTCTCGTGCTCTCCTCCAACTCTCCCCATCTCTCACGTCC
AACACCTCTTCTCCCTCCTCCTCCTCCTCGTCTTCCGATGCACTTCCTGA
TTTCGGAACTCGTGTAGAGGTTCGCCCTGGTGCTCGGGGTGTAGTGCAAT
GGTTCAACAATGTGGAGAAGGACCCTTCTACAAAACAGTGGCCTGCGACG
TTACGAGCAATGGCATCTAGCCCCATGGGAGGGTATGTGCCTGTGCGAAA
GAATGTCTACACTCTTTTGTTCCTCTTGGATCCTTCCAAACCCTCATCAC
TGCGTGCTCTCTTGCAAGGTGCAATGATGACACAACAGAATCTACCAGTC
CGTCTTGGAATTGTACTTGCAAGT
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