mRNA_M-pyrifera_M_contig75274.17771.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75274.17771.1
Unique NamemRNA_M-pyrifera_M_contig75274.17771.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A7S4HLV5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HLV5_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 7.940e-44
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 1
Query:   40 DPITVRVSGTNKRFHKRFKHLSQETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            DP   R+SG+NK+FHKRFK +  E V ++FLCALLLRG LL+QGSMYIT NYVCFY+NI  KKT+V + F DI+SVRKCKIL+SIPNSIE+HT  KKYFWASFLHR+
Sbjct:   64 DPHMDRISGSNKKFHKRFK-MPDEVVIDDFLCALLLRGALLAQGSMYITHNYVCFYANIFGKKTRVTVPFRDIISVRKCKILKSIPNSIEVHTMEKKYFWASFLHRE 169          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A7S4DSP1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSP1_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 8.120e-15
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   31 SEEDPITVRVSGTNKR--FHKRFKHLSQETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            SE + + +   G  K   F K F     E +  N+ CA L +  +L QG +Y++ NY+CFYSN+   +T+V +   DI+ V K      IPN+IE+ T   KYF+ASFL RD
Sbjct:    2 SEVEDVILSKGGQEKSHVFRKLFNLPKSERLEINYSCAYLKK--ILLQGRLYLSKNYLCFYSNVFGYETRVVLAMADIVDVSKKNTAMVIPNAIEVDTLDSKYFFASFLSRD 111          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A3B4BWN1_PYGNA (GRAM domain-containing protein 3-like n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4BWN1_PYGNA)

HSP 1 Score: 77.0 bits (188), Expect = 4.260e-14
Identity = 36/99 (36.36%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   67 TNKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            TN ++HK FK +S+ E + +++ CAL  +  +L QG ++++ N++CFYS +  K TK+AI  + +  ++K K    +PN++ I T  ++Y + SFL RD
Sbjct:  108 TNSQYHKIFKDISENEQLKQSYTCAL--QKDILYQGRLFVSDNWICFYSKVFGKDTKIAIPVSSVTIIKKTKTAILVPNALVIATAQERYVFVSFLSRD 204          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A3P9AAU3_ESOLU (GRAM domain containing 1Bb n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P9AAU3_ESOLU)

HSP 1 Score: 77.0 bits (188), Expect = 5.240e-14
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   16 DEDVDSEEDP--ITVRVSGTNKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            D+D +SEE P  ++      N+ F K FK L + E +  ++ CAL  +  +L QG +Y++ N++CFYSNI   +T +A++  DI ++ K K  R IPN+I++ T  +K+F+ SF  RD
Sbjct:  178 DQDCESEEVPSVLSPTYKQRNEDFRKLFKQLPESERLIVDYSCAL--QRDILLQGRLYLSENWICFYSNIFRWETLLAVRLKDICTMTKEKTARLIPNAIQVSTDSEKHFFTSFGARD 293          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: UPI000F514F01 (GRAM domain-containing protein 2B isoform X1 n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F514F01)

HSP 1 Score: 76.6 bits (187), Expect = 5.410e-14
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   67 TNKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            TN ++HK FK +S+ E + +++ CAL  +  +L QG ++++ N++CFYS +  K TK+AI    +  ++K K    +PN++ I T  ++Y + SFL RD
Sbjct:  110 TNAQYHKLFKDISENELLKQSYTCAL--QKDILYQGRLFVSDNWICFYSKVFGKDTKIAIPVISVSVIKKTKTAILVPNALIIATALERYVFVSFLSRD 206          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A8D0DIL1_9SAUR (GRAM domain-containing protein n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DIL1_9SAUR)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-13
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   70 NKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            N+ F ++F HL   E +  ++ CAL  +  +L QG +Y++ N++CFYSNI   +T ++I   DI  + K K  R IPN+I+I T  +K+F+ SF  RD
Sbjct:    8 NEEFKRQFSHLPDLERLVVDYACAL--QKDILLQGRLYLSENWLCFYSNIFRWETTISIALKDITFMTKEKTARLIPNAIQIATDGEKFFFTSFSARD 103          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A8J6KDQ6_ELECQ (GRAM domain-containing protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6KDQ6_ELECQ)

HSP 1 Score: 75.1 bits (183), Expect = 1.750e-13
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   49 TVRVSGTNKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            T ++S  N +FHK FK + + E + E+F CAL  +  +L QG +YI+ N++CFYS +  K TK+ I    +  ++K K    +PN++ I T   ++ + S L RD
Sbjct:   45 TSQISKANAQFHKLFKDVPKDEMLKESFTCAL--QKEILYQGKLYISENWICFYSKVFGKDTKIVIPVFAVTVIKKTKTALLVPNALVISTVTDRFMFVSLLSRD 147          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A1X7U6J7_AMPQE (GRAM domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U6J7_AMPQE)

HSP 1 Score: 75.1 bits (183), Expect = 2.020e-13
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   94 KHLSQETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            +++  E + + + CA    G LL QG +YIT NYVCFYS+I+  +TK+ IK  +++ + K K    IPN+I I T   ++F+ SF+HR+
Sbjct:   70 ENIDSEPLLKQYSCAWHRDGSLLIQGHLYITANYVCFYSSILGWETKLVIKCREVIQIFKQKTALIIPNAISITTLQHEFFFTSFIHRN 158          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A493T594_ANAPP (GRAM domain containing 1B n=3 Tax=Anatinae TaxID=2068716 RepID=A0A493T594_ANAPP)

HSP 1 Score: 75.1 bits (183), Expect = 2.450e-13
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   25 VDSEEDPITVRVSGT----NKRFHKRFKHLSQ-ETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            V S  D I   +S T    N+ F K FKHL   E +  ++ CAL  +  +L QG +Y++ N++CFYSNI   +T + ++  DI S+ K K  R IPN+I++ T  +K+F+ SF  RD
Sbjct:   37 VSSGSDEILAVLSPTYKQRNEDFRKLFKHLPDTERLIVDYSCAL--QRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDTEKHFFTSFGARD 151          
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Match: A0A2G5B4A9_COERN (VASt domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5B4A9_COERN)

HSP 1 Score: 75.1 bits (183), Expect = 2.510e-13
Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    7 EDSDEDVDSEEDPITVRVSGTNKRFHKRFKHLS-QETVNENFLCALLLRGGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPNSIEIHTPFKKYFWASFLHRD 360
            E S+ D DSE + + ++    N  FH  F+++   E + +++ CAL  +  +L QG +Y+T N+VCFYSNI    T + I F +I+S+ K      IPN+I+I T   K+F+ SF++RD
Sbjct:  213 EGSEFDADSELNAVYLK---RNADFHMLFRNIPINELLIDDYGCAL--QRDILVQGRLYLTENFVCFYSNIFGWVTNLIIAFDEIVSIEKRMTALIIPNAIQISTLHAKHFFGSFIYRD 326          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75274.17771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HLV5_9EUKA7.940e-4471.03Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4DSP1_9EUKA8.120e-1539.29Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A3B4BWN1_PYGNA4.260e-1436.36GRAM domain-containing protein 3-like n=2 Tax=Serr... [more]
A0A3P9AAU3_ESOLU5.240e-1438.14GRAM domain containing 1Bb n=1 Tax=Esox lucius Tax... [more]
UPI000F514F015.410e-1436.36GRAM domain-containing protein 2B isoform X1 n=2 T... [more]
A0A8D0DIL1_9SAUR1.700e-1339.80GRAM domain-containing protein n=1 Tax=Salvator me... [more]
A0A8J6KDQ6_ELECQ1.750e-1336.19GRAM domain-containing protein n=2 Tax=Eleutheroda... [more]
A0A1X7U6J7_AMPQE2.020e-1340.45GRAM domain-containing protein n=1 Tax=Amphimedon ... [more]
A0A493T594_ANAPP2.450e-1339.32GRAM domain containing 1B n=3 Tax=Anatinae TaxID=2... [more]
A0A2G5B4A9_COERN2.510e-1337.82VASt domain-containing protein n=1 Tax=Coemansia r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75274contigM-pyrifera_M_contig75274:5..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score80.9
Seed ortholog evalue4.5e-13
Seed eggNOG ortholog3847.GLYMA10G23630.1
Preferred nameVAD1
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0010033,GO:0010941,GO:0012505,GO:0014070,GO:0042221,GO:0042493,GO:0042742,GO:0043067,GO:0043069,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0060548,GO:0065007,GO:0098542,GO:1901700
EggNOG free text desc.GRAM domain-containing protein
EggNOG OGs37IJ8@33090,3G8QF@35493,4JES6@91835,KOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.8571577-CDS-M-pyrifera_M_contig75274:4..3641622816650.8571577-CDS-M-pyrifera_M_contig75274:4..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75274 5..364 -
1692278099.1016793-CDS-M-pyrifera_M_contig75274:4..3641692278099.1016793-CDS-M-pyrifera_M_contig75274:4..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75274 5..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75274.17771.1prot_M-pyrifera_M_contig75274.17771.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75274 5..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75274.17771.1

>prot_M-pyrifera_M_contig75274.17771.1 ID=prot_M-pyrifera_M_contig75274.17771.1|Name=mRNA_M-pyrifera_M_contig75274.17771.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MGEDSDEDVDSEEDPITVRVSGTNKRFHKRFKHLSQETVNENFLCALLLR
GGLLSQGSMYITTNYVCFYSNIIAKKTKVAIKFTDILSVRKCKILRSIPN
SIEIHTPFKKYFWASFLHRD
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mRNA from alignment at M-pyrifera_M_contig75274:5..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75274.17771.1 ID=mRNA_M-pyrifera_M_contig75274.17771.1|Name=mRNA_M-pyrifera_M_contig75274.17771.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig75274:5..364- (Macrocystis pyrifera P11B4 male)
ATGGGAGAGGACAGCGACGAAGATGTGGACTCGGAGGAGGACCCCATCAC AGTGCGGGTGTCTGGCACCAACAAGAGGTTCCACAAGCGCTTCAAGCATC TCTCCCAGGAGACGGTCAACGAGAACTTCCTCTGCGCGCTGCTCCTGCGT GGAGGCCTGCTCTCCCAGGGCTCGATGTACATCACGACCAACTATGTCTG CTTCTACTCGAACATCATCGCCAAGAAGACCAAGGTGGCCATCAAGTTCA CCGATATTCTCTCTGTACGCAAGTGCAAGATCCTTCGCTCCATTCCCAAC TCAATTGAGATTCACACTCCCTTCAAGAAGTACTTCTGGGCCTCTTTCCT CCATAGAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75274:5..364-

>mRNA_M-pyrifera_M_contig75274.17771.1 ID=mRNA_M-pyrifera_M_contig75274.17771.1|Name=mRNA_M-pyrifera_M_contig75274.17771.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig75274:5..364- (Macrocystis pyrifera P11B4 male)
ATGGGAGAGGACAGCGACGAAGATGTGGACTCGGAGGAGGACCCCATCAC
AGTGCGGGTGTCTGGCACCAACAAGAGGTTCCACAAGCGCTTCAAGCATC
TCTCCCAGGAGACGGTCAACGAGAACTTCCTCTGCGCGCTGCTCCTGCGT
GGAGGCCTGCTCTCCCAGGGCTCGATGTACATCACGACCAACTATGTCTG
CTTCTACTCGAACATCATCGCCAAGAAGACCAAGGTGGCCATCAAGTTCA
CCGATATTCTCTCTGTACGCAAGTGCAAGATCCTTCGCTCCATTCCCAAC
TCAATTGAGATTCACACTCCCTTCAAGAAGTACTTCTGGGCCTCTTTCCT
CCATAGAGACATGGGAGAGGACAGCGACGAAGATGTGGACTCGGAGGAGG
ACCCCATCACAGTGCGGGTGTCTGGCACCAACAAGAGGTTCCACAAGCGC
TTCAAGCATCTCTCCCAGGAGACGGTCAACGAGAACTTCCTCTGCGCGCT
GCTCCTGCGTGGAGGCCTGCTCTCCCAGGGCTCGATGTACATCACGACCA
ACTATGTCTGCTTCTACTCGAACATCATCGCCAAGAAGACCAAGGTGGCC
ATCAAGTTCACCGATATTCTCTCTGTACGCAAGTGCAAGATCCTTCGCTC
CATTCCCAACTCAATTGAGATTCACACTCCCTTCAAGAAGTACTTCTGGG
CCTCTTTCCTCCATAGAGAC
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