mRNA_M-pyrifera_M_contig75246.17767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75246.17767.1
Unique NamemRNA_M-pyrifera_M_contig75246.17767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.850e-38
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK HVNCFIMFPEGRVSEIQERQMTTVPD NIHCVSVEGSFDDCQDIVKAAFADKPFR E +  A
Sbjct:  163 TGSAAIYGLRGKAHVNCFIMFPEGRVSEIQERQMTTVPDANIHCVSVEGSFDDCQDIVKAAFADKPFREEVKLGA 237
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BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S2SVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW5_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.880e-31
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK +VNCFI++P+GRVS IQERQM TVPD NIHC+ VEG+FDDCQDIVK AF DK FR E +  A
Sbjct:  152 TGSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFRDEVKLGA 226
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BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S2UCD3_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.420e-31
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK+ V+CFI++P+GRVSEIQERQMTTVPD NIHCV+VEG+FDDCQDIVKA+FAD  FR   +  A
Sbjct:  149 TGSAAIYGLRGKKGVDCFILYPQGRVSEIQERQMTTVPDDNIHCVAVEGTFDDCQDIVKASFADVEFRNRVKLGA 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A835Z4E7_9STRA (Threonine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 8.200e-31
Identity = 57/68 (83.82%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFR 204
            TGSAAIYG+RGK+H++CFI+FPEGRVS+IQERQMTTV D NIHCVSVEGSFDDCQ IVKAAF DK FR
Sbjct:  151 TGSAAIYGMRGKKHMDCFILFPEGRVSQIQERQMTTVEDTNIHCVSVEGSFDDCQAIVKAAFNDKEFR 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S2SVX2_9STRA (Threonine synthase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVX2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.950e-31
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK +VNCFI++P+GRVS IQERQM TVPD NIHC+ VEG+FDDCQDIVK AF DK FR E +  A
Sbjct:  152 TGSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFRDEVKLGA 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S2NSM0_9STRA (Threonine synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSM0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.840e-30
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGKE ++C I++P+GRVSEIQERQMTTVPD NIHCVSV+G+FDDCQD+VKAAF D  FR E    A
Sbjct:  162 TGSAAIYGLRGKEGIDCVILYPKGRVSEIQERQMTTVPDDNIHCVSVDGTFDDCQDLVKAAFRDASFRDEVHLGA 236
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S2IFR4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFR4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.600e-29
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK+ V+C I+FP GRVS IQERQMTTVPD NIHCV+++G+FDDCQD+VKA+FADK FR   +  A
Sbjct:  139 TGSAAIYGLRGKKGVDCVILFPHGRVSAIQERQMTTVPDANIHCVAIDGTFDDCQDLVKASFADKDFRERVKLGA 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: A0A7S1Z2C3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2C3_TRICV)

HSP 1 Score: 118 bits (295), Expect = 1.770e-29
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK+ V+C I++PEGRVS IQERQMTTVPD NIHCV+VEG+FDDCQD+VKA+FAD  FR   +  A
Sbjct:  183 TGSAAIYGLRGKKGVDCVILYPEGRVSAIQERQMTTVPDDNIHCVAVEGTFDDCQDLVKASFADAAFRERVKLGA 257
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: B8CBR8_THAPS (Threonine synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR8_THAPS)

HSP 1 Score: 115 bits (288), Expect = 1.560e-28
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK+ V+C I+FP+GRVSEIQERQMTTV D NIHCVSVEG+FDDCQDIVKA+F +  FR + +  A
Sbjct:  151 TGSAAIYGLRGKKGVDCIILFPDGRVSEIQERQMTTVKDGNIHCVSVEGTFDDCQDIVKASFDNMEFRNKVKLGA 225
[Close]
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Match: W7TYE5_9STRA (Threonine synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.730e-28
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGSFDDCQDIVKAAFADKPFRRETRQDA 225
            TGSAAIYGLRGK +V CFI++P+GR S IQERQMTTVPD N+ C++VEG+FDDCQ+IVKAAF D  FR E R  A
Sbjct:  153 TGSAAIYGLRGKANVRCFILYPKGRTSAIQERQMTTVPDKNVQCIAVEGTFDDCQNIVKAAFQDASFREEVRLGA 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75246.17767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN21_ECTSI1.850e-3890.67Threonine synthase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S2SVW5_9STRA1.880e-3174.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UCD3_9STRA4.420e-3176.00Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A835Z4E7_9STRA8.200e-3183.82Threonine synthase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2SVX2_9STRA9.950e-3174.67Threonine synthase (Fragment) n=1 Tax=Rhizochromul... [more]
A0A7S2NSM0_9STRA4.840e-3074.67Threonine synthase n=1 Tax=Leptocylindrus danicus ... [more]
A0A7S2IFR4_9STRA1.600e-2972.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1Z2C3_TRICV1.770e-2973.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8CBR8_THAPS1.560e-2873.33Threonine synthase n=1 Tax=Thalassiosira pseudonan... [more]
W7TYE5_9STRA1.730e-2870.67Threonine synthase n=2 Tax=Monodopsidaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75246contigM-pyrifera_M_contig75246:362..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue3.6e-32
Seed eggNOG ortholog2880.D8LN21
Preferred nameTHR4
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.2-oxobutyrate metabolic process
EggNOG OGsCOG0498@1,KOG2616@2759
EC4.2.3.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.634427-CDS-M-pyrifera_M_contig75246:361..5891622816650.634427-CDS-M-pyrifera_M_contig75246:361..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75246 362..589 +
1692278098.9651008-CDS-M-pyrifera_M_contig75246:361..5891692278098.9651008-CDS-M-pyrifera_M_contig75246:361..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75246 362..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75246.17767.1prot_M-pyrifera_M_contig75246.17767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75246 362..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75246.17767.1

>prot_M-pyrifera_M_contig75246.17767.1 ID=prot_M-pyrifera_M_contig75246.17767.1|Name=mRNA_M-pyrifera_M_contig75246.17767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
TGSAAIYGLRGKEHVNCFIMFPEGRVSEIQERQMTTVPDPNIHCVSVEGS
FDDCQDIVKAAFADKPFRRETRQDA*
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mRNA from alignment at M-pyrifera_M_contig75246:362..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75246.17767.1 ID=mRNA_M-pyrifera_M_contig75246.17767.1|Name=mRNA_M-pyrifera_M_contig75246.17767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig75246:362..589+ (Macrocystis pyrifera P11B4 male)
ACAGGCTCGGCCGCCATCTACGGTCTGCGCGGCAAGGAGCACGTGAACTG
CTTCATCATGTTCCCAGAAGGCAGGGTGAGCGAGATTCAGGAGAGGCAGA
TGACCACCGTCCCCGACCCCAACATTCACTGCGTCAGTGTCGAGGGATCC
TTCGATGACTGCCAGGATATCGTCAAGGCCGCCTTCGCGGACAAACCCTT
CAGGCGAGAGACAAGACAAGACGCATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75246:362..589+

>mRNA_M-pyrifera_M_contig75246.17767.1 ID=mRNA_M-pyrifera_M_contig75246.17767.1|Name=mRNA_M-pyrifera_M_contig75246.17767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig75246:362..589+ (Macrocystis pyrifera P11B4 male)
ACAGGCTCGGCCGCCATCTACGGTCTGCGCGGCAAGGAGCACGTGAACTG
CTTCATCATGTTCCCAGAAGGCAGGGTGAGCGAGATTCAGGAGAGGCAGA
TGACCACCGTCCCCGACCCCAACATTCACTGCGTCAGTGTCGAGGGATCC
TTCGATGACTGCCAGGATATCGTCAAGGCCGCCTTCGCGGACAAACCCTT
CAGGCGAGAGACAAGACAAGACGCATAGACAGGCTCGGCCGCCATCTACG
GTCTGCGCGGCAAGGAGCACGTGAACTGCTTCATCATGTTCCCAGAAGGC
AGGGTGAGCGAGATTCAGGAGAGGCAGATGACCACCGTCCCCGACCCCAA
CATTCACTGCGTCAGTGTCGAGGGATCCTTCGATGACTGCCAGGATATCG
TCAAGGCCGCCTTCGCGGACAAACCCTTCAGGCGAGAGACAAGACAAGAC
GCATAG
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