mRNA_M-pyrifera_M_contig75245.17766.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75245.17766.1
Unique NamemRNA_M-pyrifera_M_contig75245.17766.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: D7FRX0_ECTSI (Dynein heavy chain family dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX0_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 8.430e-39
Identity = 74/151 (49.01%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLPDSGYXXXXXXXXXXXXXXARWEPAE-SDEPEYVVGVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R++G+PLD M  ETH++T+ + +++    Y              ARW   E + +PE + G P  G+L +SRLKELLP +PV+ V AVPVQ  W P +VG+IR+DP ++EAPV IT FRGPT  FLAT KT DP  KW L G A++LQTDD
Sbjct: 3767 RSTGSPLDKMTTETHISTFMEPQEV--DYYPQDGAFVSGLYIEGARWATGEEAGDPEVITGTPCAGNLVDSRLKELLPALPVVYVKAVPVQSSWEPSAVGYIRHDPKIYEAPVYITSFRGPTYVFLATLKTEDPVSKWTLTGTAVLLQTDD 3915          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A6H5KXD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.370e-38
Identity = 76/154 (49.35%), Postives = 98/154 (63.64%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDL---PDSGYXXXXXXXXXXXXXXARWEPAE-SDEPEYVVGVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R++G+PLD M  ETHV+T+ + +++   P  G               ARW   E + EPE + G P  G+L +SRLKELLP +PV+ V AVPVQ  W P +VG+IR+DP ++EAPV IT FRGPT  FLAT KT  P  KW L G A++LQTDD
Sbjct: 3720 RSTGSPLDKMTTETHVSTFMEPQEVDYSPQDG-----AFVSGLYIEGARWATGEEAGEPEMITGTPCAGNLVDSRLKELLPALPVVYVKAVPVQSSWEPSAVGYIRHDPKIYEAPVYITSFRGPTYVFLATLKTEHPVSKWTLTGTAVLLQTDD 3868          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S1YQU1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQU1_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.590e-35
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLPDSGYXXXXXXXXXXXXXXARWEPAESDEPEYVV-GVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R +G  LD M IETHVT+  DV ++  + Y              ARW   E     YVV G    G L +SRLKEL+PPMPVI V AVP+Q  W   SVGF+R DP +FE PV  T FRGPT  FLAT K+  P  KWVL GVA++LQTD+
Sbjct:  330 RKTGLALDKMTIETHVTSMWDVSEV--NAYAEDGTYIHGLFIEGARWPKGEEASDTYVVSGTKCAGSLFDSRLKELIPPMPVIYVKAVPIQSHWEASSVGFLRGDPEIFECPVYTTSFRGPTYIFLATLKSDVPPSKWVLGGVALMLQTDN 478          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S4SLK3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SLK3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.150e-34
Identity = 76/151 (50.33%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLPDSGYXXXXXXXXXXXXXXARWEPAESDEPEYVV-GVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R +G  LD M IETHVT+  DV ++  + Y              ARW   E     YVV G    G L +SRLKEL+PPMPVI V AVP+Q  W   SVGF+R DP +FE PV  T FRGPT  FLAT K+  P  KWVL GVA++LQTD+
Sbjct:  754 RKTGLALDKMTIETHVTSMWDVSEV--NAYAEDGTYIHGLFIEGARWPKGEEASDTYVVSGTKCAGSLFDSRLKELIPPMPVIYVKAVPIQSHWEASSVGFLRGDPEIFECPVYTTSFRGPTYIFLATLKSDVPPSKWVLGGVALMLQTDN 902          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A836CGE4_9STRA (Dynein heavy chain family dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.330e-34
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYND---VEDLPDSGYXXXXXXXXXXXXXXARWEPA-ESDEPEYVVGVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTD 447
            R +GAPLD M  ETH+TT+ D    + +P+ G               ARW    E+ + E V G PT G L +SRLKELLP +PVI V AVPVQ  W P +VG++R+  +++EAP  +TRFRGPT  FLAT KT+ P  KWVL G A+I Q D
Sbjct: 3831 RKTGAPLDKMTTETHITTFTDPAQCDYVPEDG-----AFVHGLFLEGARWATGDEAGDVENVTGTPTAGMLVDSRLKELLPQLPVIYVKAVPVQPTWEPSAVGYLRHQHDVYEAPCYLTRFRGPTYVFLATLKTLAPVSKWVLTGTALIFQRD 3978          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S3YEA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEA8_HETAK)

HSP 1 Score: 129 bits (323), Expect = 9.070e-34
Identity = 74/154 (48.05%), Postives = 92/154 (59.74%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYND---VEDLPDSGYXXXXXXXXXXXXXXARWEPAESDEPEYVVG-VPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R+ G  LD M  ETH+TTY D   ++ +PD G               ARW   +  E    VG V T G L +SRLKELLP +PVI V AV VQ  W P +VG++R+ P+++E PV +T FRGPT  FLAT KT  P  KWVL G A+I+QTDD
Sbjct:  140 RSRGFALDQMTTETHITTYYDPAGIDFVPDDGVFIHGIYIEG-----ARWPALDELEATEPVGNVSTGGVLTDSRLKELLPLLPVIYVKAVQVQPSWEPSAVGYLRHTPDVYECPVYLTSFRGPTYIFLATMKTEAPTSKWVLTGTAMIMQTDD 288          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S1G6P9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6P9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.150e-32
Identity = 70/154 (45.45%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLPDSGYXXXXXXXXXXXXXXARWEPAESDEPEY----VVGVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R +  PLDNM  ETHVT Y   + + D  Y              ARW   + D+ E     V GVP  G+LA+S+LK+LLP +PV+ + AV V+  W P SVG++R DP+++E PV  T FRGPT  FLAT  T  P  KWV +GVAII+Q D+
Sbjct:  492 RRNNYPLDNMTTETHVTAYRSPDAVKD--YPADGAYVYGLFIEGARWNTKDEDDQEIEATDVSGVPCVGYLADSKLKQLLPALPVLYIKAVTVEPTWEPSSVGYLRGDPSIYECPVYFTTFRGPTYVFLATLATRAPVSKWVQSGVAIIMQEDE 643          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A4D9CXY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXY3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.790e-32
Identity = 74/153 (48.37%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLP-DSGYXXXXXXXXXXXXXXARWEPAE-SDEPEYVVG-VPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R +G PLDNM IETHVTT+   E L  D                 ARW P E + E   VVG     G+L +S+LKELL P+PV+ + AVPVQ  W P SVG++RN P+++E PV +T  RG T  FLAT KTV+P  KWVL G A+++Q+DD
Sbjct: 4100 RQTGYPLDNMTIETHVTTFASPEQLGNDIPPPHEGAYVHGLYIEGARWTPPEEAAETVSVVGNTLVGGNLTDSKLKELLSPLPVLYIRAVPVQPTWEPSSVGYLRNQPDVYECPVYLTSARGATYIFLATLKTVEPVSKWVLTGTALLMQSDD 4252          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S2US96_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US96_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.680e-31
Identity = 72/154 (46.75%), Postives = 87/154 (56.49%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDL---PDSGYXXXXXXXXXXXXXXARWEPAESDEPEYVV-GVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R SG PLD M  ETHVTT  +   +   P SG               ARW   +     Y + G+P  G L +SRLKELLP +PV+ VLAV VQ  W P +VG++R+  + +E PV IT FRGPT  FLAT  T  P  KW L G AII+QTDD
Sbjct:  160 RESGKPLDKMTTETHVTTIPEASTITAPPVSG-----AFVHGLFIEGARWPTGDELGDTYDLNGIPCGGSLIDSRLKELLPALPVVYVLAVEVQPHWEPSAVGYLRHRDDTYECPVYITSFRGPTYVFLATLNTEVPVSKWTLTGTAIIMQTDD 308          
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Match: A0A7S2W5P0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5P0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.750e-31
Identity = 68/151 (45.03%), Postives = 87/151 (57.62%), Query Frame = 1
Query:    1 RNSGAPLDNMAIETHVTTYNDVEDLPDSGYXXXXXXXXXXXXXXARWEPAE-SDEPEYVVGVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFEAPVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD 450
            R +G PL+NM  ETHVTT  +  +   + Y              ARW   E ++EP+ V   P  G L +S LKELLP MPV+ V AV V  +W  + VG++RNDP ++E PV +T  RGPT  FLAT  T  P  KWVL G A+I+QT D
Sbjct:  162 RATGLPLNNMTNETHVTTMKEAREA--NYYPKDGMFIYGFYIEGARWSTLEEAEEPQTVGSTPCSGFLMDSHLKELLPSMPVMYVRAVEVDPQWQAEGVGYLRNDPAIYECPVYMTLARGPTYVFLATLTTQAPTHKWVLTGTALIMQTAD 310          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75245.17766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRX0_ECTSI8.430e-3949.01Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A6H5KXD4_9PHAE7.370e-3849.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1YQU1_9STRA1.590e-3550.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4SLK3_9STRA1.150e-3450.33Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A836CGE4_9STRA4.330e-3448.37Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A7S3YEA8_HETAK9.070e-3448.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1G6P9_9STRA1.150e-3245.45Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A4D9CXY3_9STRA1.790e-3248.37Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2US96_9STRA1.680e-3146.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W5P0_9STRA1.750e-3145.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75245contigM-pyrifera_M_contig75245:1..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue2e-31
Seed eggNOG ortholog2880.D7FRX0
Preferred nameODA-DHCA
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size453
Cds size426
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.588119-UTR-M-pyrifera_M_contig75245:0..271622816650.588119-UTR-M-pyrifera_M_contig75245:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75245 1..27 +
1692278098.9370303-UTR-M-pyrifera_M_contig75245:0..271692278098.9370303-UTR-M-pyrifera_M_contig75245:0..27Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75245 1..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.602169-CDS-M-pyrifera_M_contig75245:27..4531622816650.602169-CDS-M-pyrifera_M_contig75245:27..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75245 28..453 +
1692278098.9490905-CDS-M-pyrifera_M_contig75245:27..4531692278098.9490905-CDS-M-pyrifera_M_contig75245:27..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75245 28..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75245.17766.1prot_M-pyrifera_M_contig75245.17766.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75245 28..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75245.17766.1

>prot_M-pyrifera_M_contig75245.17766.1 ID=prot_M-pyrifera_M_contig75245.17766.1|Name=mRNA_M-pyrifera_M_contig75245.17766.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MAIETHVTTYNDVEDLPDSGYPESGFYTHGYYLEGARWEPAESDEPEYVV
GVPTRGHLAESRLKELLPPMPVILVLAVPVQDEWLPDSVGFIRNDPNLFE
APVCITRFRGPTVTFLATRKTVDPKRKWVLAGVAIILQTDD*
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mRNA from alignment at M-pyrifera_M_contig75245:1..453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75245.17766.1 ID=mRNA_M-pyrifera_M_contig75245.17766.1|Name=mRNA_M-pyrifera_M_contig75245.17766.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig75245:1..453+ (Macrocystis pyrifera P11B4 male)
CGAAACTCTGGTGCTCCACTTGATAACATGGCCATTGAAACACATGTTAC CACTTACAATGATGTCGAAGATCTTCCAGACTCTGGATATCCAGAATCTG GCTTCTACACCCATGGATACTACCTTGAAGGTGCACGATGGGAACCTGCA GAATCTGATGAACCAGAATATGTCGTTGGTGTTCCGACACGTGGTCATCT TGCAGAGTCTCGTCTCAAAGAATTACTCCCACCAATGCCTGTCATCCTTG TCCTTGCAGTTCCTGTCCAAGACGAATGGCTTCCTGATTCCGTTGGATTC ATCCGAAATGATCCAAACCTCTTTGAAGCACCAGTTTGCATCACCAGATT CCGTGGACCCACTGTCACTTTCCTTGCTACCCGCAAGACTGTTGACCCCA AGAGGAAGTGGGTGCTCGCTGGTGTTGCCATCATCCTCCAAACCGATGAC TAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75245:1..453+

>mRNA_M-pyrifera_M_contig75245.17766.1 ID=mRNA_M-pyrifera_M_contig75245.17766.1|Name=mRNA_M-pyrifera_M_contig75245.17766.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig75245:1..453+ (Macrocystis pyrifera P11B4 male)
ATGGCCATTGAAACACATGTTACCACTTACAATGATGTCGAAGATCTTCC
AGACTCTGGATATCCAGAATCTGGCTTCTACACCCATGGATACTACCTTG
AAGGTGCACGATGGGAACCTGCAGAATCTGATGAACCAGAATATGTCGTT
GGTGTTCCGACACGTGGTCATCTTGCAGAGTCTCGTCTCAAAGAATTACT
CCCACCAATGCCTGTCATCCTTGTCCTTGCAGTTCCTGTCCAAGACGAAT
GGCTTCCTGATTCCGTTGGATTCATCCGAAATGATCCAAACCTCTTTGAA
GCACCAGTTTGCATCACCAGATTCCGTGGACCCACTGTCACTTTCCTTGC
TACCCGCAAGACTGTTGACCCCAAGAGGAAGTGGGTGCTCGCTGGTGTTG
CCATCATCCTCCAAACCGATGACTAAATGGCCATTGAAACACATGTTACC
ACTTACAATGATGTCGAAGATCTTCCAGACTCTGGATATCCAGAATCTGG
CTTCTACACCCATGGATACTACCTTGAAGGTGCACGATGGGAACCTGCAG
AATCTGATGAACCAGAATATGTCGTTGGTGTTCCGACACGTGGTCATCTT
GCAGAGTCTCGTCTCAAAGAATTACTCCCACCAATGCCTGTCATCCTTGT
CCTTGCAGTTCCTGTCCAAGACGAATGGCTTCCTGATTCCGTTGGATTCA
TCCGAAATGATCCAAACCTCTTTGAAGCACCAGTTTGCATCACCAGATTC
CGTGGACCCACTGTCACTTTCCTTGCTACCCGCAAGACTGTTGACCCCAA
GAGGAAGTGGGTGCTCGCTGGTGTTGCCATCATCCTCCAAACCGATGACT
AA
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