mRNA_M-pyrifera_M_contig7524.17763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7524.17763.1
Unique NamemRNA_M-pyrifera_M_contig7524.17763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7524.17763.1 vs. uniprot
Match: D7G2P1_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.690e-33
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 2 
Query:    2 VQSVTKEATALIGKAMELFTTLVAKEAFSVSQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 199
            VQSVTKEATALIGKAMELFT+L+AKE+FSV+QSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR
Sbjct:  244 VQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 309
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BLAST of mRNA_M-pyrifera_M_contig7524.17763.1 vs. uniprot
Match: A0A6H5KV94_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV94_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.120e-32
Identity = 62/66 (93.94%), Postives = 66/66 (100.00%), Query Frame = 2 
Query:    2 VQSVTKEATALIGKAMELFTTLVAKEAFSVSQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 199
            VQSVTKEATALIGKAMELFT+L+AKE+FSV+QSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR
Sbjct:  351 VQSVTKEATALIGKAMELFTSLMAKESFSVAQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLPTR 416
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BLAST of mRNA_M-pyrifera_M_contig7524.17763.1 vs. uniprot
Match: A0A835ZK76_9STRA (Histone-like transcription factor (CBF/NF-Y) and archaeal histone-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK76_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.600e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:    2 VQSVTKEATALIGKAMELFTTLVAKEAFSVSQSQNRRLLKLQDITDIMHNQDQFYWIKDDFPLP 193
            V +VTKEATAL+ KAM+LF   +A+ ++ +     RR +K QDI   +H  D+++W K DF  P
Sbjct:  293 VGNVTKEATALVEKAMQLFLEQLAQRSWEMCTEDGRRNIKTQDIAMCVHALDEYHWCKADFEKP 356
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7524.17763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2P1_ECTSI1.690e-3393.94HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV94_9PHAE1.120e-3293.94HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835ZK76_9STRA2.600e-743.75Histone-like transcription factor (CBF/NF-Y) and a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7524contigM-pyrifera_M_contig7524:4740..8334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size259
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7524.17763.1prot_M-pyrifera_M_contig7524.17763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7524 4742..8334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.456879-CDS-M-pyrifera_M_contig7524:4741..48421622816650.456879-CDS-M-pyrifera_M_contig7524:4741..4842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 4742..4842 -
1692278098.8744648-CDS-M-pyrifera_M_contig7524:4741..48421692278098.8744648-CDS-M-pyrifera_M_contig7524:4741..4842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 4742..4842 -
1622816650.4677246-CDS-M-pyrifera_M_contig7524:5291..53961622816650.4677246-CDS-M-pyrifera_M_contig7524:5291..5396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 5292..5396 -
1692278098.888859-CDS-M-pyrifera_M_contig7524:5291..53961692278098.888859-CDS-M-pyrifera_M_contig7524:5291..5396Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 5292..5396 -
1622816650.4799185-CDS-M-pyrifera_M_contig7524:8285..83341622816650.4799185-CDS-M-pyrifera_M_contig7524:8285..8334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 8286..8334 -
1692278098.898654-CDS-M-pyrifera_M_contig7524:8285..83341692278098.898654-CDS-M-pyrifera_M_contig7524:8285..8334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7524 8286..8334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7524.17763.1

>prot_M-pyrifera_M_contig7524.17763.1 ID=prot_M-pyrifera_M_contig7524.17763.1|Name=mRNA_M-pyrifera_M_contig7524.17763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
RPERDEGGDGAHRKGHGAVHDACGEGSVFGIAKSKQKAAEAAGHHGHYAQ
PGPVLLDQGRLPAAHAVMTTTPEQGLFSLAEAVVV
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mRNA from alignment at M-pyrifera_M_contig7524:4740..8334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7524.17763.1 ID=mRNA_M-pyrifera_M_contig7524.17763.1|Name=mRNA_M-pyrifera_M_contig7524.17763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3595bp|location=Sequence derived from alignment at M-pyrifera_M_contig7524:4740..8334- (Macrocystis pyrifera P11B4 male)
CGTCCAGAGCGTGACGAAGGAGGCGACGGCGCTCATAGGAAAGGCCATGG
TGAGAATCGGCTAAATTTAACCATTTTGGAACCGCAGTCAGTCCCGTTTC
GGGGACAAACCAGTCAAATTATAAGTAGTCTGTCCCCAAAATGGGACTGC
GGTTCTAAAAGGGTTAAGGAACCCTTTCAGGGCAAAAACTGTAAATCTCG
TTTTGGGGACAAAACTACTCAAATTCTAAGCAGTTCGTTCCCCAAAACCG
GGTTGCAGTTTGTCCTAAAAAGGGTTTATCAACTGCCTTTGGGACCCCCG
AGATGGTGTTTTTGGATATATTTTTTTCGGGGAGGGGGGGGGGGAAATAT
TTTTCGGGAAAAAAAATCAACAGTTTTTTTTAAGCAACACCAAGATTTTT
TTTTGACTCGGGTGTTATCGACCGTGTACGAGCAGCTCGAGCGCCCGAAC
GGTACGGGAGGGGTCGTGCTTGCCTCCGTACCATGCCGTCAGGCTCCTCG
CGCTGTAGCTCGGGACACCCAGTGTGATATTAGAGGTGCTCGTAGCACAT
TTGCTGTAGGTAGGTTACTTTTGTTTCTGAACGACTGGGCTCTCTATTAA
ACCCAAAATCGTCCGAATGCCAGATCTTGTTTCGAAAAATGAACGGGCCG
TGGGATTAATTCATCCGGATATATATATTTTTTTTTGCTGAGACGTCAGT
TTTCGGATGACTGACTTGCTGCTATTACGGGGGTCCATAGTAAACAGGAC
CAAATATTTTTAGCAACAATAGGTGAATATATAGGTTTTTGTGTGTACCG
TAGGGCCTGTTAACTATGGTCCCCCGTGAATAGTAGGGAGCTCCTCGAGT
GAGGAAGGAGCCGCAGAAAAGAAATGGGAGCACCTCTTCTGTAGCCCCAA
ATCACCGCAGTGGCCGTCGCTGTGATTCCTCCGCTTTTTTTCACCACAAT
TTTTTTTCCCCGTCTGAATTCCCCGAGAGGATTAAAACCAAAGGCCAAGA
CGGGACGAGACGAGAAAAAAAAAAAGACGGGTGTCCTTCTTCCTTGCCAA
TTTCTGCAAGCGTCGCACCACGAACATCATGTCCACCGTCAAACGTTCGG
GCCTAAAAGCGATGCTGCTCCTCTGGCAGGAAAGACAAGGCCGCAGCGCG
CTCGGAGAAAGTGTTGGTGGGCATCGATCGTAACGCACTACTGTAGAGAG
CGCTGATTTTGCACAGACAGGGGTAGGTGCGATCGTTTAAGCGCTCGTTT
TTCTCGATAAATGGCTGTAGTTAACGAAATTCCTGGGACAGCGAGCGACC
GCTGTCCAGCTGCGAGCAACAGCCCTCTGTGTTCGGGTGTTGTAGCTGTC
TGCCAGCACCGTTCCGTGCGGTATCCACTTGGTACTCCCACAAGCGCGAT
CAGCCAAACAAGGCCAGCTGCTGCCGTCAATGTGAGCTACGTACTTCTAC
AGTAATACGTACTCAGCCGAAGAACATGAACCATAACGCCTAATTATCTC
TACAACAACAAACTGCCTCTGTCCGCTATCCGCCATCCGTCGTCCATCAT
CCAACATCCGTCGTTGGTCATCCGTCGTCATGAATTAGTCAGTCTCATGC
ATCGTCCGCCACCATCACCGATCGCTCACCATCCATCCATCTAACCTTAT
ACGCCATCATCCCAACATCGTCCACCACCCAGTACCCATAGTCCGGTATC
ATTTGCCCATTATCCACCAATCAGCAGTCAGCATCCCAACATCCGACAGC
TAAATGGGTATGTGGTAGTATATTACTTTGATATTAATAGAATAAAACAC
TAGTTAACAAGCGTAGAATAAAATATTCGCAGGGCAGCCCAGCCAAAATG
CGCATGCGTATGATATTGTCATACTTTTTTGAGTATCGTATCGTTTCCCT
CTATCGCCCAAACTAATTGTTCCACACTCCCTCAAGTCCTTAATTTTAAT
TAATTTTATTGTATCCACACCTACGAAGGAAGTCGCCTTCTCTGCTGGTG
TCGGCCCTGTCGTGATACTTGGACGAGTTTGGCCGAAAAAAGCGCTTGAA
GCGCGCGGTTTCTTTCGTATACGTGGCGAGGAGGTGTCTCTCCACGAAAC
CTCCCTCGCATCTCGCGAGGATGAGATCCCCTAAGATGGAAAAGAGAGTC
AGTGGGAGTGGACCCTTCACTCCCCAGTAGTGGCGTTCTGGGTTTGTATT
CCCGGACGTTAACCATTGTGACGACCGGCCGTGATGGCGGTTCTCGTAGG
CCGGACGTTGGTTGACGCATCTTCATGGTTGGTACAGGTGTGATTGGAGA
CTGGCGGTATCTACGTACCCTTACCTCCACACCACCCCATTTTGCTGAGC
ACATATACCGTCTTTCAAGTAATCCATTGTACAGAACACTCATCCTTCCA
TTATTGCGACAGCAGTAGTGTCTGAAAAAAAAATCGTCGAAGTCTACTAT
TGCGGGGGACCATAGTAAATAGGACCTACGGTATACACGAACGCCTATAT
ATTTATATGTTTCTGCTAACAATAGTTGGTCCTATTTACTATGGTCCCCC
GTAATATTAATACGTTTTCTTGTGACAGTATTTGCCATATCAAGAGTGGG
TTAAGTAACCCCTTTTAATAATGCACTCCGTCACCACCGTCATCAATCAG
CATCCATCATCCAATATCTCGCATCAACCAATCCTCGTCGAGGCGACCCT
CATCAATCATCCATCAGCTTCAATCCGTCTATCCGTGCTTCCGTTGTGTC
CGAGCCTCCACGTTGCCATCAAAATCCGTCAGGCCGAGTTTCGGAACTTG
CGCACGATCGTATTTTTAATGAATTTTCCGAAACTTACCGATATTGATTT
CCACCGAAAATTCCGAATTTGAATTTCCAAATAAACCGAAAACTTATCAT
TGACGGCGCGGTGGTTTCTGCGTGTTTCTGTTCTGCAGGAGCTGTTCACG
ACGCTTGTGGCGAAGGAAGCGTTTTCGGTATCGCAAAGTCAAAACAGAAG
GCTGCTGAAGCTGCAGGACATCACGGACATTATGCACAACCAGGCGAGTT
TTGCTACAGCTAGTGCATATCATACGGTACGTATATCCGAGGAGTTGGAT
TGGAAACAGCCATTTTTTGCGGCGCGCCGTGTATGCGTAGGTCTCAGCCT
TCTCTTCCCTTCCTTCCCTTTTTGTATTTATTTTGTACCCCGTATATTAT
AGTTCATTTGTTTGTAAGCTTGCTGTATGCGCTTTGGTTCTCTTCTTGCA
GTTTTTCTGTGGTTTTGGTTTCTCTCGCTTTTCTTTGTTTTCTGTATAAA
TATGCAGGTTTTCTATGGTTTTATGTTTTCTGTGGTCTTTTTTGGTTTCT
TGTCTTTCAATCCGCCCCTTTGGTTTTTGTATTTTTCTTTATTTTCTTTT
TTTATGTCTTGTCTTGTCCTTTCTTTGCACACACACACCCTACCCCCCCA
TCGCCACCGCCGCCACTTTTTGTCCCTCGAAACTTTAAACAGGACCAGTT
TTACTGGATCAAGGACGACTTCCCGCTGCCCACGCGGTGATGACAACAAC
TCCCGAGCAGGGGCTTTTCTCTTTGGCGGAGGCGGTAGTGGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7524:4740..8334-

>mRNA_M-pyrifera_M_contig7524.17763.1 ID=mRNA_M-pyrifera_M_contig7524.17763.1|Name=mRNA_M-pyrifera_M_contig7524.17763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig7524:4740..8334- (Macrocystis pyrifera P11B4 male)
CGTCCAGAGCGTGACGAAGGAGGCGACGGCGCTCATAGGAAAGGCCATGC
GTCCAGAGCGTGACGAAGGAGGCGACGGCGCTCATAGGAAAGGCCATGGA
GCTGTTCACGACGCTTGTGGCGAAGGAAGCGTTTTCGGTATCGCAAAGTC
AAAACAGAAGGCTGCTGAAGCTGCAGGACATCACGGACATTATGCACAAC
CAGGAGCTGTTCACGACGCTTGTGGCGAAGGAAGCGTTTTCGGTATCGCA
AAGTCAAAACAGAAGGCTGCTGAAGCTGCAGGACATCACGGACATTATGC
ACAACCAGGACCAGTTTTACTGGATCAAGGACGACTTCCCGCTGCCCACG
CGGTGATGACAACAACTCCCGAGCAGGGGCTTTTCTCTTTGGCGGAGGCG
GTAGTGGTTGACCAGTTTTACTGGATCAAGGACGACTTCCCGCTGCCCAC
GCGGTGATGACAACAACTCCCGAGCAGGGGCTTTTCTCTTTGGCGGAGGC
GGTAGTGGTT
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