mRNA_M-pyrifera_M_contig75237.17762.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75237.17762.1
Unique NamemRNA_M-pyrifera_M_contig75237.17762.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A183CUY0_9BILA (Uncharacterized protein n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183CUY0_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 5.720e-9
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 GPLLVPGDVLRKTPLREVVVVNPPPGPAVTIGAAKPRLYWNAVPEVRVTACPHCSHLFHADDFEMAMLQSG-CPAC 225
            G ++   + L     R+V+V   PP P  T      R Y+N +PE+ ++ C  C H+FHADDFEMA L++G CP C
Sbjct:  262 GKIVANRETLLNLDRRQVIVAEWPP-PLFT------RFYYNIIPEISISQCSSCHHMFHADDFEMACLKTGACPFC 330
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A158Q6G9_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A158Q6G9_DRAME)

HSP 1 Score: 54.7 bits (130), Expect = 6.720e-7
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  103 KPRLYWNAVPEVRVTACPHCSHLFHADDFEMAMLQSG-CPAC 225
            K + Y+N +PE+ ++ C  C H+FHADDFEMA L +G CP C
Sbjct:  464 KAQFYYNFIPEISISKCNFCHHMFHADDFEMACLTTGGCPLC 505
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A482XQ63_LAOST (Intraflagellar transport protein 122 homolog n=2 Tax=Delphacidae TaxID=33362 RepID=A0A482XQ63_LAOST)

HSP 1 Score: 53.1 bits (126), Expect = 2.420e-6
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  115 YWNAVPEVRVTACPHCSHLFHADDFEMAMLQSG-CPAC 225
            Y N +PE+++T CP C+ +FH DDFEM +LQSG CP C
Sbjct: 1145 YRNLLPELQITLCPSCNKVFHVDDFEMKILQSGHCPFC 1182
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A0N5AQ67_9BILA (Intraflagellar transport protein 122 homolog n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AQ67_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   52 VVVVNPPPGPAVTIGAAKPRLYWNAVPEVRVTACPHCSHLFHADDFEMAMLQSGC-PAC 225
            ++V N PP         K R Y+N +PE+ V+ C  C H+F  DDFE+A L+ GC P C
Sbjct: 1087 LIVENSPP--------LKTRFYYNIIPEIAVSKCDSCQHMFLMDDFELAYLKHGCCPFC 1137
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A834XKJ9_9HYME (Intraflagellar transport protein 122 homolog n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XKJ9_9HYME)

HSP 1 Score: 50.1 bits (118), Expect = 2.960e-5
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  103 KPRLYWNAVPEVRVTACPHCSHLFHADDFEMAMLQSG-CPAC 225
            K + Y N +P++++T C +C  LFHADD+E+A+L+ G CP C
Sbjct: 1141 KTKYYKNLLPDLQITYCKYCLRLFHADDYELALLRQGHCPFC 1182
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BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Match: A0A1I7S260_BURXY ((pine wood nematode) hypothetical protein n=1 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A1I7S260_BURXY)

HSP 1 Score: 49.7 bits (117), Expect = 3.800e-5
Identity = 19/40 (47.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  109 RLYWNAVPEVRVTACPHCSHLFHADDFEMAMLQSG-CPAC 225
            + Y   +PE+ ++ C  C  LFH DD++MA+LQSG CP C
Sbjct:  283 KFYLKVIPEIPISQCDECKKLFHGDDYQMAVLQSGTCPVC 322
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75237.17762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A183CUY0_9BILA5.720e-940.79Uncharacterized protein n=1 Tax=Gongylonema pulchr... [more]
A0A158Q6G9_DRAME6.720e-752.38Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A482XQ63_LAOST2.420e-657.89Intraflagellar transport protein 122 homolog n=2 T... [more]
A0A0N5AQ67_9BILA1.160e-542.37Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A834XKJ9_9HYME2.960e-547.62Intraflagellar transport protein 122 homolog n=1 T... [more]
A0A1I7S260_BURXY3.800e-547.50(pine wood nematode) hypothetical protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75237contigM-pyrifera_M_contig75237:46..270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue4e-07
Seed eggNOG ortholog7176.CPIJ002989-PA
KEGG koko:K19656
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030991,GO:0031503,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035721,GO:0042073,GO:0042995,GO:0043226,GO:0044085,GO:0044464,GO:0044782,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0097730,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:1905515
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs38DVQ@33154,3BHFB@33208,3CYJ4@33213,3SGQA@50557,41WIE@6656,450IA@7147,45GDY@7148,COG2319@1,KOG1538@2759
COG Functional cat.S
Best tax levelNematocera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.4243824-CDS-M-pyrifera_M_contig75237:45..2701622816650.4243824-CDS-M-pyrifera_M_contig75237:45..270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75237 46..270 +
1692278098.858005-CDS-M-pyrifera_M_contig75237:45..2701692278098.858005-CDS-M-pyrifera_M_contig75237:45..270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75237 46..270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75237.17762.1prot_M-pyrifera_M_contig75237.17762.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75237 46..270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75237.17762.1

>prot_M-pyrifera_M_contig75237.17762.1 ID=prot_M-pyrifera_M_contig75237.17762.1|Name=mRNA_M-pyrifera_M_contig75237.17762.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
GPLLVPGDVLRKTPLREVVVVNPPPGPAVTIGAAKPRLYWNAVPEVRVTA
CPHCSHLFHADDFEMAMLQSGCPAC
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mRNA from alignment at M-pyrifera_M_contig75237:46..270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75237.17762.1 ID=mRNA_M-pyrifera_M_contig75237.17762.1|Name=mRNA_M-pyrifera_M_contig75237.17762.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig75237:46..270+ (Macrocystis pyrifera P11B4 male)
GGCCCACTCCTTGTTCCTGGAGATGTTCTTCGCAAAACACCTCTTCGAGA
AGTTGTCGTGGTCAACCCACCACCAGGACCAGCAGTCACGATTGGAGCAG
CAAAACCAAGACTCTATTGGAACGCTGTCCCTGAAGTTCGTGTCACAGCT
TGCCCGCATTGCTCCCATTTGTTCCATGCAGACGACTTTGAAATGGCAAT
GCTTCAAAGCGGATGCCCAGCCTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75237:46..270+

>mRNA_M-pyrifera_M_contig75237.17762.1 ID=mRNA_M-pyrifera_M_contig75237.17762.1|Name=mRNA_M-pyrifera_M_contig75237.17762.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig75237:46..270+ (Macrocystis pyrifera P11B4 male)
GGCCCACTCCTTGTTCCTGGAGATGTTCTTCGCAAAACACCTCTTCGAGA
AGTTGTCGTGGTCAACCCACCACCAGGACCAGCAGTCACGATTGGAGCAG
CAAAACCAAGACTCTATTGGAACGCTGTCCCTGAAGTTCGTGTCACAGCT
TGCCCGCATTGCTCCCATTTGTTCCATGCAGACGACTTTGAAATGGCAAT
GCTTCAAAGCGGATGCCCAGCCTGTGGCCCACTCCTTGTTCCTGGAGATG
TTCTTCGCAAAACACCTCTTCGAGAAGTTGTCGTGGTCAACCCACCACCA
GGACCAGCAGTCACGATTGGAGCAGCAAAACCAAGACTCTATTGGAACGC
TGTCCCTGAAGTTCGTGTCACAGCTTGCCCGCATTGCTCCCATTTGTTCC
ATGCAGACGACTTTGAAATGGCAATGCTTCAAAGCGGATGCCCAGCCTGT
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