mRNA_M-pyrifera_M_contig7520.17758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7520.17758.1
Unique NamemRNA_M-pyrifera_M_contig7520.17758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7520.17758.1 vs. uniprot
Match: D7FV26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV26_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 8.340e-68
Identity = 161/373 (43.16%), Postives = 209/373 (56.03%), Query Frame = 1 
Query:    1 APPRDFELVGCLKNHPGCEPRRGRVARGVGVPGVFNELVFCF-----TGAGSCEVEKDR--LARLVKLGEGALKKNAKLKPEGGRGGWVDEPFGGASGRSDYDNDPSEFDAPAVTG---------KTVVLVVLWDCPDGT-ISQELARTATKESVEVAATAAVDQAWIVRSIEEGSPVPFDDFRLSQGGLHSPSSTAGARKSSEERAKRPGKGRLSIRPASSRQEVVLDVGNERHNRNAPLST--CDRQKEAEKLMLDAQAAIEAADRVTKQAEALRPPPL-GAKGFEFTRLGGRKKVKKGIPDASRDLTCFCWDRFAQADLKDTLDKAGYLSLSGKGPDDSDHKLGEFWFDKVYDGFFLKRSESAIPEAERR 1059
            +PPRDFELVGC +NH GC+PRRGR+ RG  VPGVF+   FC       GA S  V+  R  L RL++LG G +   A + P    G + D PFG +   S  D++    +A +  G         +TVV++ + D  DG  +S  LA+ AT +  E+ A AAVD+ W +RS++ GS VPFD   LS   +  PS   G   SS+  A R    R     A  R EV+LD+ ++   R+A       DR+K A  L +    A E +   TKQ  A  PPP  GA GFEFTR G +KK K G P+    +T F  +  AQ DLK+ L K GYL      PD  +H+LGEFWFD VYDGFF+KRSE+AIPEA+RR
Sbjct:    3 SPPRDFELVGCSENHEGCKPRRGRLNRGFKVPGVFHGYAFCVIAGKGAGASSSRVDGSRSGLERLLRLGGGVIL--APVPPRAAEG-FCDNPFG-SEDISGSDDEAVHVEAGSGDGGDNEATAKERTVVVLAMPDSSDGRGVSLSLAKAATDKCRELGAAAAVDRGWALRSLDIGSRVPFDGHDLSDDDIRRPSGQRGGG-SSKRAASRLSIPRPRCGDARPRTEVLLDLEDDGGRRSAMAEAVRADREKTARLLRI----AEEVSKAPTKQVPASDPPPAPGADGFEFTRNGSKKKAK-GPPN----VTTFAAENKAQRDLKEALHKVGYLDADSSDPD-KEHRLGEFWFDLVYDGFFMKRSENAIPEAKRR 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig7520.17758.1 vs. uniprot
Match: A0A6H5KNX9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX9_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 3.380e-63
Identity = 162/378 (42.86%), Postives = 211/378 (55.82%), Query Frame = 1 
Query:    1 APPRDFELVGCLKNHPGCEPRRGRVARGVGVPGVFNELVFCF-----TGAGSCEVEKDR--LARLVKLGEGALKKNAKLKPEGGRGGWVDEPFGGASGRSDYDNDPSEFDAPAVTG---------KTVVLVVLWDCPDGT-ISQELARTATKESVEVAATAAVDQAWIVRSIEEGSPVPFDDFRLSQGGLHSPSSTAGARKSSEERAKRPGKGRLSIR-----PASSRQEVVLDVGNERHNRNAPLSTC--DRQKEAEKLMLDAQAAIEAADRVTKQAEALRPPP-LGAKGFEFTRLGGRKKVKKGIPDASRDLTCFCWDRFAQADLKDTLDKAGYLSLSGKGPDDSDHKLGEFWFDKVYDGFFLKRSESAIPEAERR 1059
            +PPRDFELVGC +NH GC+PRRGR+ RG  VPGVF+   FC       GA    V+  R  L RL++LG G +   A + P    G + D PFG +    D D++    +A +  G         + VV++ L D  DG  +S  LA+ AT +  E+ A AAVD+ W +RS++ GS +PFD   LS   +  PS   G   S      +P   RLSI       A  R EV+LD+ ++   R+A       DR+K A  L +    A E +   TKQ  A  PPP LGA GFEFTR G +KK K G P+    +T F  +  AQ DLK+ L KAGYL  +   PD  +H+LGEFWFD VYDGFF+KRSE+AIPEA+RR
Sbjct: 1874 SPPRDFELVGCSENHEGCKPRRGRLNRGFKVPGVFHGYAFCVIAGGGAGASFSTVDGSRSGLERLLRLGGGVIL--ASVAPRAAEG-FCDNPFG-SEDMPDSDDEVVHVEAGSGDGGDNAAAAKERMVVVLALPDSSDGHGVSLSLAKIATDKCRELGAAAAVDRGWALRSLDRGSRLPFDGHDLSDDDVRRPSGQRGGGSS------KPAASRLSIPRRRCGDAPPRTEVLLDLEDDGGRRSAMAEAVRTDREKTARLLRI----AEEVSKAPTKQVPASDPPPGLGADGFEFTRNGSKKKAK-GPPN----VTTFAAENKAQRDLKEALHKAGYLDANSSDPD-KEHRLGEFWFDLVYDGFFMKRSENAIPEAKRR 2231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7520.17758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV26_ECTSI8.340e-6843.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX9_9PHAE3.380e-6342.86RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7520contigM-pyrifera_M_contig7520:10821..12735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1062
Cds size1062
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7520.17758.1prot_M-pyrifera_M_contig7520.17758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7520 10821..12735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.2482424-CDS-M-pyrifera_M_contig7520:10820..113281622816650.2482424-CDS-M-pyrifera_M_contig7520:10820..11328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 10821..11328 +
1692278098.7685676-CDS-M-pyrifera_M_contig7520:10820..113281692278098.7685676-CDS-M-pyrifera_M_contig7520:10820..11328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 10821..11328 +
1622816650.2617903-CDS-M-pyrifera_M_contig7520:11370..116951622816650.2617903-CDS-M-pyrifera_M_contig7520:11370..11695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 11371..11695 +
1692278098.7789135-CDS-M-pyrifera_M_contig7520:11370..116951692278098.7789135-CDS-M-pyrifera_M_contig7520:11370..11695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 11371..11695 +
1622816650.2723863-CDS-M-pyrifera_M_contig7520:11961..120191622816650.2723863-CDS-M-pyrifera_M_contig7520:11961..12019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 11962..12019 +
1692278098.7886808-CDS-M-pyrifera_M_contig7520:11961..120191692278098.7886808-CDS-M-pyrifera_M_contig7520:11961..12019Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 11962..12019 +
1622816650.2840002-CDS-M-pyrifera_M_contig7520:12564..127351622816650.2840002-CDS-M-pyrifera_M_contig7520:12564..12735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 12565..12735 +
1692278098.8005168-CDS-M-pyrifera_M_contig7520:12564..127351692278098.8005168-CDS-M-pyrifera_M_contig7520:12564..12735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7520 12565..12735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7520.17758.1

>prot_M-pyrifera_M_contig7520.17758.1 ID=prot_M-pyrifera_M_contig7520.17758.1|Name=mRNA_M-pyrifera_M_contig7520.17758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=354bp
APPRDFELVGCLKNHPGCEPRRGRVARGVGVPGVFNELVFCFTGAGSCEV
EKDRLARLVKLGEGALKKNAKLKPEGGRGGWVDEPFGGASGRSDYDNDPS
EFDAPAVTGKTVVLVVLWDCPDGTISQELARTATKESVEVAATAAVDQAW
IVRSIEEGSPVPFDDFRLSQGGLHSPSSTAGARKSSEERAKRPGKGRLSI
RPASSRQEVVLDVGNERHNRNAPLSTCDRQKEAEKLMLDAQAAIEAADRV
TKQAEALRPPPLGAKGFEFTRLGGRKKVKKGIPDASRDLTCFCWDRFAQA
DLKDTLDKAGYLSLSGKGPDDSDHKLGEFWFDKVYDGFFLKRSESAIPEA
ERR*
back to top

mRNA from alignment at M-pyrifera_M_contig7520:10821..12735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7520.17758.1 ID=mRNA_M-pyrifera_M_contig7520.17758.1|Name=mRNA_M-pyrifera_M_contig7520.17758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1915bp|location=Sequence derived from alignment at M-pyrifera_M_contig7520:10821..12735+ (Macrocystis pyrifera P11B4 male)
GCTCCACCCCGCGATTTCGAGCTCGTAGGCTGTTTGAAGAACCATCCAGG
CTGCGAGCCGCGGCGAGGGCGGGTCGCTAGGGGGGTGGGCGTCCCGGGTG
TCTTCAATGAGTTGGTATTTTGTTTCACCGGTGCGGGGTCTTGTGAGGTC
GAAAAGGATCGGCTGGCGCGACTGGTGAAGCTTGGCGAAGGCGCCTTGAA
GAAGAACGCCAAACTGAAACCAGAGGGAGGTCGGGGAGGGTGGGTGGACG
AGCCTTTTGGCGGCGCGAGCGGCAGGTCCGATTATGACAATGACCCTTCC
GAATTCGACGCGCCTGCCGTGACCGGCAAGACGGTGGTGCTCGTAGTCCT
GTGGGATTGTCCAGACGGGACAATCAGCCAGGAGCTCGCGAGGACAGCGA
CCAAGGAAAGCGTCGAAGTCGCCGCTACTGCCGCGGTCGACCAGGCCTGG
ATTGTGCGGTCCATCGAAGAAGGCTCGCCGGTGCCCTTTGACGATTTTCG
GTTGTCGCGTTTCGTGGACATACTGCCGCCGCGGAAGAGAGCGTTCAAAG
AGGGCGGACTCCACTCGCCGAGCTCGACCGCAGGCGCGCGCAAGTCAAGC
GAAGAACGCGCCAAGCGCCCGGGCAAGGGGCGGCTGAGTATTCGGCCGGC
GTCCTCGCGGCAGGAGGTGGTACTCGACGTTGGCAACGAGCGGCACAACC
GGAACGCCCCGCTGTCGACGTGTGACCGACAAAAGGAGGCGGAAAAACTC
ATGCTTGATGCGCAGGCAGCGATTGAGGCCGCCGATAGGGTAACCAAGCA
GGCGGAGGCATTGCGACCGCCTCCCCTCGGAGCGAAAGGGTTCGAGTTCA
CCCGCTTGGGCGGCAGAAAGAAGGTGTGTCGACTGCATCCTGCGGGGTGT
GGGGGCGGGGGCGGGGGTGGGGGGAGGCGAGCGCGCAATAGTTGGATTGT
TTGTTGCGAAGCGGGCGTGGATGCAGCCGAAATCCTCTCCTGGCTATCGA
GTAGTTCGATGGTCTCGTATTTCAGAGGATCGAACGGTATCTGCTGCAAT
TGTGGTTTTGTGTGCTCCCGATTGATGGCAAAATATTTCTTGGTCTGCGA
AGGGGTCAGCGAGGTCTGTGTCCGAACGAAGAGCTGAGCAGAAAAAAGGG
CATACCCGATGCTTCGCGCGATTTGACGTGTTTTTGCTGGGACCGTTTCG
TTGAGCGATGCCTTGCTGGGAGACGGTCTGGAGGCATTGCTTTTACTTTT
AGCTCGTATCATATCTCCCCCAGGGTGAGGCTGAATAATGTCTGACTTCT
TCATTTGTGTTCCCTGCTCTTTTTTGCCACGTGCAGGGAACCGCAGTTGG
CGATGCGGGTGGAAAGGGCACCGTGACCTTCACTCTGGAAAACAAGGCAA
GATAAACATACTGTAGCAGATAATGCCGTGCTGGGCCCTAACAGCGTTAC
CGTTGTGTCGCGAGCACTGCTGTAGTAGCGCACAGACTTCAGATGTCGCC
TTTTTACACTGGGGGATGTTGCTCGAACATACCAGGTACTCGAGACGTTC
ATGGGCTCACCATTACTGTTACGGGGGGCCATAGTAAATAGGACCTACGG
CACGCACAAAAATCTATATATTTACGTATATTTACGAACAATATTTGGTC
CTATTTACTATGCCCCCCCGTAATAACATAATGTGATGGAATGATCCCGA
CCCAACCCCGTTCGGGCACCGCCTTCAAACACCACGCTCAACAGGCGCAG
GCGGATCTGAAGGACACCTTGGACAAGGCCGGCTACCTTAGTCTGTCAGG
CAAGGGTCCCGACGACAGCGACCACAAGCTGGGGGAGTTTTGGTTCGACA
AAGTGTACGACGGGTTCTTTTTGAAGAGGTCGGAAAGCGCCATACCTGAG
GCGGAACGGAGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7520:10821..12735+

>mRNA_M-pyrifera_M_contig7520.17758.1 ID=mRNA_M-pyrifera_M_contig7520.17758.1|Name=mRNA_M-pyrifera_M_contig7520.17758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2124bp|location=Sequence derived from alignment at M-pyrifera_M_contig7520:10821..12735+ (Macrocystis pyrifera P11B4 male)
GCTCCACCCCGCGATTTCGAGCTCGTAGGCTGTTTGAAGAACCATCCAGG
CTGCGAGCCGCGGCGAGGGCGGGTCGCTAGGGGGGTGGGCGTCCCGGGTG
TCTTCAATGAGTTGGTATTTTGTTTCACCGGTGCGGGGTCTTGTGAGGTC
GAAAAGGATCGGCTGGCGCGACTGGTGAAGCTTGGCGAAGGCGCCTTGAA
GAAGAACGCCAAACTGAAACCAGAGGGAGGTCGGGGAGGGTGGGTGGACG
AGCCTTTTGGCGGCGCGAGCGGCAGGTCCGATTATGACAATGACCCTTCC
GAATTCGACGCGCCTGCCGTGACCGGCAAGACGGTGGTGCTCGTAGTCCT
GTGGGATTGTCCAGACGGGACAATCAGCCAGGAGCTCGCGAGGACAGCGA
CCAAGGAAAGCGTCGAAGTCGCCGCTACTGCCGCGGTCGACCAGGCCTGG
ATTGTGCGGTCCATCGAAGAAGGCTCGCCGGTGCCCTTTGACGATTTTCG
GTTGTCGCGCTCCACCCCGCGATTTCGAGCTCGTAGGCTGTTTGAAGAAC
CATCCAGGCTGCGAGCCGCGGCGAGGGCGGGTCGCTAGGGGGGTGGGCGT
CCCGGGTGTCTTCAATGAGTTGGTATTTTGTTTCACCGGTGCGGGGTCTT
GTGAGGTCGAAAAGGATCGGCTGGCGCGACTGGTGAAGCTTGGCGAAGGC
GCCTTGAAGAAGAACGCCAAACTGAAACCAGAGGGAGGTCGGGGAGGGTG
GGTGGACGAGCCTTTTGGCGGCGCGAGCGGCAGGTCCGATTATGACAATG
ACCCTTCCGAATTCGACGCGCCTGCCGTGACCGGCAAGACGGTGGTGCTC
GTAGTCCTGTGGGATTGTCCAGACGGGACAATCAGCCAGGAGCTCGCGAG
GACAGCGACCAAGGAAAGCGTCGAAGTCGCCGCTACTGCCGCGGTCGACC
AGGCCTGGATTGTGCGGTCCATCGAAGAAGGCTCGCCGGTGCCCTTTGAC
GATTTTCGGTTGTCGCAGGGCGGACTCCACTCGCCGAGCTCGACCGCAGG
CGCGCGCAAGTCAAGCGAAGAACGCGCCAAGCGCCCGGGCAAGGGGCGGC
TGAGTATTCGGCCGGCGTCCTCGCGGCAGGAGGTGGTACTCGACGTTGGC
AACGAGCGGCACAACCGGAACGCCCCGCTGTCGACGTGTGACCGACAAAA
GGAGGCGGAAAAACTCATGCTTGATGCGCAGGCAGCGATTGAGGCCGCCG
ATAGGGTAACCAAGCAGGCGGAGGCATTGCGACCGCCTCCCCTCGGAGCG
AAAGGGTTCGAGTTCACCCGCTTGGGCGGCAGAAAGAAGGTAGGGCGGAC
TCCACTCGCCGAGCTCGACCGCAGGCGCGCGCAAGTCAAGCGAAGAACGC
GCCAAGCGCCCGGGCAAGGGGCGGCTGAGTATTCGGCCGGCGTCCTCGCG
GCAGGAGGTGGTACTCGACGTTGGCAACGAGCGGCACAACCGGAACGCCC
CGCTGTCGACGTGTGACCGACAAAAGGAGGCGGAAAAACTCATGCTTGAT
GCGCAGGCAGCGATTGAGGCCGCCGATAGGGTAACCAAGCAGGCGGAGGC
ATTGCGACCGCCTCCCCTCGGAGCGAAAGGGTTCGAGTTCACCCGCTTGG
GCGGCAGAAAGAAGGTAAAAAAGGGCATACCCGATGCTTCGCGCGATTTG
ACGTGTTTTTGCTGGGACCGTTTCAAAAAAGGGCATACCCGATGCTTCGC
GCGATTTGACGTGTTTTTGCTGGGACCGTTTCGCGCAGGCGGATCTGAAG
GACACCTTGGACAAGGCCGGCTACCTTAGTCTGTCAGGCAAGGGTCCCGA
CGACAGCGACCACAAGCTGGGGGAGTTTTGGTTCGACAAAGTGTACGACG
GGTTCTTTTTGAAGAGGTCGGAAAGCGCCATACCTGAGGCGGAACGGAGG
TAAGCGCAGGCGGATCTGAAGGACACCTTGGACAAGGCCGGCTACCTTAG
TCTGTCAGGCAAGGGTCCCGACGACAGCGACCACAAGCTGGGGGAGTTTT
GGTTCGACAAAGTGTACGACGGGTTCTTTTTGAAGAGGTCGGAAAGCGCC
ATACCTGAGGCGGAACGGAGGTAA
back to top