mRNA_M-pyrifera_M_contig7516.17751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7516.17751.1
Unique NamemRNA_M-pyrifera_M_contig7516.17751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: A0A6H5J9S3_9PHAE (Herpes_Helicase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S3_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.550e-35
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   31 VLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQG-------FPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPS 411
            +LTR LD S GL N  K++VL I  +TL     K G  H+IPRITFGFIT QG       FPVR CFA+ +H+SQGQTL +V+ D R DVFMHG LYV LSRVR  + IRI+    R+   +  +R +NVVY S
Sbjct:    1 MLTRNLDISNGLCNSTKLVVLHITNFTLRAKNLKDGVEHFIPRITFGFITRQGVAVKRVQFPVRLCFAITIHKSQGQTLDKVLFDNRTDVFMHGCLYVALSRVRAANDIRILVEPCRVS-ADGFARVLNVVYKS 133          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: D7FZH9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH9_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.020e-30
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   10 IKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQG-------FPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPS 411
            + +GV V+L R L     LTNG KV+V++I P+TL +    +G   W+PRI F F+T QG       FPVR CF + +HR+QGQTL +  +DL R  F HG LYVGLSRVR  D I I+TT DRI   ++ ++  NVV+ S
Sbjct:  507 LNVGVVVMLCRNLSIDDCLTNGTKVVVVAIQPFTLKLQTLDHGKMFWLPRIAFNFVTDQGVAVKRVQFPVRLCFCLTVHRAQGQTLDKTCIDLTRHPFAHGHLYVGLSRVRKSDDIIILTTSDRI-DGDVFAKVHNVVFKS 646          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: A0A6P8ZK23_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZK23_THRPL)

HSP 1 Score: 101 bits (252), Expect = 2.860e-22
Identity = 59/142 (41.55%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    7 KIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGF---------ITWQGFPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVY 405
            K+K+G    +TR L+   GL NG KV+V ++ P  + V  +    T  IPRITF F         I  + FP++  +A+  H+SQGQT+ +V +DLR D F HG LYVGLSRVR  D I ++   DRI   +  + T N+VY
Sbjct:  810 KLKIGAVCFITRNLNIEEGLVNGTKVVVEAVSPRIVRVRKAGGNETFAIPRITFKFPIVDGAPLMINRRQFPLQLAYAMSFHKSQGQTINKVGVDLRTDCFTHGQLYVGLSRVRSPDDIVVLVPHDRIH--DGVAYTKNIVY 949          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: A0A6J1TGF1_FRAOC (ATP-dependent DNA helicase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1TGF1_FRAOC)

HSP 1 Score: 99.4 bits (246), Expect = 1.920e-21
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   10 IKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQG---------FPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVY 405
            +K+G   ++TR L+   GL NG K +V SI P  + V +     ++ IPRI F F    G         FP++  +A+  H+SQGQT+  V LDLR D F HG LYVGLSRVR  D I ++   DR+      + T N++Y
Sbjct: 1720 LKIGAVCLITRNLNIEQGLVNGTKCVVESISPQLIRVRLPNSNRSYGIPRILFKFPIVDGSPMTMVRRQFPLQLAYAMTFHKSQGQTIKTVGLDLRTDCFTHGQLYVGLSRVRSPDDITVLVPPDRVH--NGIAYTKNIIY 1858          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: UPI001EEAF528 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEAF528)

HSP 1 Score: 90.5 bits (223), Expect = 1.290e-19
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    7 KIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQGFPVRFC---FAVIL------HRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPSSPLN 423
            ++K+G   ++ R L+   GL NG KVIV +I    + V +        IPRITF F   +G P+R C   F ++L      H+SQGQT+  V +DLR D F HG LYV LSRVR  D I ++  +DRI   E  +   N+VY    LN
Sbjct:   80 RLKVGSVCLIMRNLNIGDGLVNGTKVIVTAISSRLITVRLIGNTQPIGIPRITFRFAFAEGSPLRVCRRQFPLMLAYCMTGHKSQGQTIEYVGVDLRTDCFTHGQLYVLLSRVRRPDDIVVLVPDDRIV--EGVAYAKNIVYDELLLN 225          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: A0A6J1TE18_FRAOC (ATP-dependent DNA helicase n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1TE18_FRAOC)

HSP 1 Score: 89.4 bits (220), Expect = 1.670e-19
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   10 IKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWI--PRITFGFITWQG---------FPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDR 360
            +K+G   ++ R L+ S  L NG KVIV  I P    V++ K GT   I  PRI F F   +G         FP++ C+ + +H+SQGQT+ +V LDLR D F HG LYV LSR R  D + ++   DR
Sbjct:   46 LKIGAVCMIMRNLNMSERLVNGTKVIVEGISPRL--VTVRKPGTQELIAIPRILFRFPVLEGSPLQMCRRQFPLQVCYGMTVHKSQGQTIFKVGLDLRSDCFTHGQLYVALSRTRRSDDVTVLGAPDR 171          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: UPI001EEC96E2 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEC96E2)

HSP 1 Score: 87.8 bits (216), Expect = 1.870e-19
Identity = 59/137 (43.07%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   40 RRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQGFPVRFC---FAVIL------HRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPSSPLN 423
            R L+   GL NG KVIV +I    + V +        IPRITF F   +G P+R C   F ++L      H+SQGQT+  V +DLR D F HG LYV LSRVR  D I ++  +DRI    LC    N+VY    LN
Sbjct:    2 RNLNIGDGLVNGTKVIVTAISSRLITVRLIGNTQPIGIPRITFRFAFAEGSPLRVCRRQFPLMLAYCMTGHKSQGQTIEYVGVDLRTDCFTHGQLYVLLSRVRRPDDIVVLVPDDRIVEGVLCIAK-NIVYDELLLN 137          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: A0A6P8Y9Z8_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y9Z8_THRPL)

HSP 1 Score: 93.6 bits (231), Expect = 1.970e-19
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    7 KIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQG---------FPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVY 405
            ++K+G   ++TR L+   GL NG KVIV SI P  + V  +    +  IPRITF F    G         FP++  + + +H+SQGQT+  V +DLR + F HG LYV LSRVR  + I+++    R+    +   T NVVY
Sbjct: 1162 RLKVGAVCLITRNLNVDQGLVNGTKVIVQSISPNLVRVRKATSSESFGIPRITFKFPMLPGSPLTVVRRQFPLQLAYGMSVHKSQGQTIDLVGVDLRTECFTHGQLYVALSRVRSRENIKLLVPPARVLHGTV--HTKNVVY 1301          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: UPI00103A3A51 (uncharacterized protein LOC114364057 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A3A51)

HSP 1 Score: 92.4 bits (228), Expect = 4.920e-19
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    7 KIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGF---------ITWQGFPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYP 408
            K+K+G   ++ R L  S  L NG KVIV+   P  + V          IPRI F           +T + FP+  C+A+ +H+SQGQT+  V +DLR DVF HG LYV L RV+    I+I+ + D++   +L     NVVYP
Sbjct:  937 KLKVGCVCMIIRNLSFSDRLVNGTKVIVVKTTPRIIIVRKPGETNEFLIPRILFKAPIEPDSPIEMTRRQFPLALCYAMTVHKSQGQTINRVGVDLRSDVFSHGQLYVALGRVQEKSDIKILVSRDKLIDNKLLLN--NVVYP 1077          
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Match: UPI001EEC01C0 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEC01C0)

HSP 1 Score: 90.5 bits (223), Expect = 7.270e-19
Identity = 60/148 (40.54%), Postives = 81/148 (54.73%), Query Frame = 1
Query:    7 KIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHWIPRITFGFITWQGFPVRFC---FAVIL------HRSQGQTLGEVVLDLRRDVFMHGSLYVGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPSSPLN 423
            ++K+G   ++ R L+   GL NG KVIV +I    + V +        IPRITF F   +G P+R C   F ++L      H+SQGQT+  V +DLR D F HG LYV LSRVR  D I ++  +DRI   E  +   N+VY    LN
Sbjct:  192 RLKVGSVCLIMRNLNIGDGLVNGTKVIVTAISSRLITVRLIGNTQPIGIPRITFRFAFAEGSPLRVCRRQFPLMLAYCMTGHKSQGQTIEYVGVDLRTDCFTHGQLYVLLSRVRRPDDIVVLVPDDRIV--EGVAYAKNIVYDELLLN 337          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7516.17751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9S3_9PHAE3.550e-3552.99Herpes_Helicase domain-containing protein n=1 Tax=... [more]
D7FZH9_ECTSI1.020e-3047.52ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6P8ZK23_THRPL2.860e-2241.55ATP-dependent DNA helicase n=1 Tax=Thrips palmi Ta... [more]
A0A6J1TGF1_FRAOC1.920e-2139.72ATP-dependent DNA helicase n=1 Tax=Frankliniella o... [more]
UPI001EEAF5281.290e-1940.54ATP-dependent DNA helicase PIF1-like n=1 Tax=Homal... [more]
A0A6J1TE18_FRAOC1.670e-1941.41ATP-dependent DNA helicase n=1 Tax=Frankliniella o... [more]
UPI001EEC96E21.870e-1943.07ATP-dependent DNA helicase PIF1-like n=2 Tax=Homal... [more]
A0A6P8Y9Z8_THRPL1.970e-1938.73ATP-dependent DNA helicase n=1 Tax=Thrips palmi Ta... [more]
UPI00103A3A514.920e-1938.46uncharacterized protein LOC114364057 n=1 Tax=Ostri... [more]
UPI001EEC01C07.270e-1940.54ATP-dependent DNA helicase PIF1-like n=1 Tax=Homal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7516contigM-pyrifera_M_contig7516:1740..2189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue3.3e-26
Seed eggNOG ortholog2880.D7FZH9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size429
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.9109964-CDS-M-pyrifera_M_contig7516:1739..19281622816649.9109964-CDS-M-pyrifera_M_contig7516:1739..1928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7516 1740..1928 +
1692278098.6081433-CDS-M-pyrifera_M_contig7516:1739..19281692278098.6081433-CDS-M-pyrifera_M_contig7516:1739..1928Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7516 1740..1928 +
1622816649.931103-CDS-M-pyrifera_M_contig7516:1949..21891622816649.931103-CDS-M-pyrifera_M_contig7516:1949..2189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7516 1950..2189 +
1692278098.6197598-CDS-M-pyrifera_M_contig7516:1949..21891692278098.6197598-CDS-M-pyrifera_M_contig7516:1949..2189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7516 1950..2189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7516.17751.1prot_M-pyrifera_M_contig7516.17751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7516 1740..2189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7516.17751.1

>prot_M-pyrifera_M_contig7516.17751.1 ID=prot_M-pyrifera_M_contig7516.17751.1|Name=mRNA_M-pyrifera_M_contig7516.17751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
RQKIKLGVCVVLTRRLDASAGLTNGAKVIVLSIMPYTLYVSISKYGTTHW
IPRITFGFITWQGFPVRFCFAVILHRSQGQTLGEVVLDLRRDVFMHGSLY
VGLSRVRPLDYIRIVTTEDRICPCELCSRTVNVVYPSSPLNL*
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mRNA from alignment at M-pyrifera_M_contig7516:1740..2189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7516.17751.1 ID=mRNA_M-pyrifera_M_contig7516.17751.1|Name=mRNA_M-pyrifera_M_contig7516.17751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig7516:1740..2189+ (Macrocystis pyrifera P11B4 male)
CGTCAAAAAATTAAATTGGGAGTGTGCGTTGTGCTTACTAGACGTTTAGA CGCGTCCGCCGGTTTAACGAATGGTGCTAAAGTTATCGTATTGAGTATTA TGCCTTACACCTTGTATGTATCAATCTCAAAATATGGCACGACTCATTGG ATTCCCCGAATTACATTTGGGTTTATCACATGGCAAGGTGTGGATGTTAA TCGTGTTTAGTTCCCCGTTCGTTTTTGTTTCGCGGTTATTCTGCACCGTA GCCAAGGCCAGACATTGGGCGAAGTGGTCTTGGATTTACGCAGGGATGTT TTCATGCACGGGTCCCTCTATGTAGGTCTATCAAGAGTAAGGCCACTCGA TTACATCAGAATAGTGACCACCGAGGATAGAATTTGCCCCTGCGAACTTT GTTCTAGGACTGTCAACGTCGTGTATCCTTCTTCACCACTTAATTTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7516:1740..2189+

>mRNA_M-pyrifera_M_contig7516.17751.1 ID=mRNA_M-pyrifera_M_contig7516.17751.1|Name=mRNA_M-pyrifera_M_contig7516.17751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig7516:1740..2189+ (Macrocystis pyrifera P11B4 male)
CGTCAAAAAATTAAATTGGGAGTGTGCGTTGTGCTTACTAGACGTTTAGA
CGCGTCCGCCGGTTTAACGAATGGTGCTAAAGTTATCGTATTGAGTATTA
TGCCTTACACCTTGTATGTATCAATCTCAAAATATGGCACGACTCATTGG
ATTCCCCGAATTACATTTGGGTTTATCACATGGCAAGGTCGTCAAAAAAT
TAAATTGGGAGTGTGCGTTGTGCTTACTAGACGTTTAGACGCGTCCGCCG
GTTTAACGAATGGTGCTAAAGTTATCGTATTGAGTATTATGCCTTACACC
TTGTATGTATCAATCTCAAAATATGGCACGACTCATTGGATTCCCCGAAT
TACATTTGGGTTTATCACATGGCAAGGTTTCCCCGTTCGTTTTTGTTTCG
CGGTTATTCTGCACCGTAGCCAAGGCCAGACATTGGGCGAAGTGGTCTTG
GATTTACGCAGGGATGTTTTCATGCACGGGTCCCTCTATGTAGGTCTATC
AAGAGTAAGGCCACTCGATTACATCAGAATAGTGACCACCGAGGATAGAA
TTTGCCCCTGCGAACTTTGTTCTAGGACTGTCAACGTCGTGTATCCTTCT
TCACCACTTAATTTGTAATTCCCCGTTCGTTTTTGTTTCGCGGTTATTCT
GCACCGTAGCCAAGGCCAGACATTGGGCGAAGTGGTCTTGGATTTACGCA
GGGATGTTTTCATGCACGGGTCCCTCTATGTAGGTCTATCAAGAGTAAGG
CCACTCGATTACATCAGAATAGTGACCACCGAGGATAGAATTTGCCCCTG
CGAACTTTGTTCTAGGACTGTCAACGTCGTGTATCCTTCTTCACCACTTA
ATTTGTAA
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