mRNA_M-pyrifera_M_contig75108.17743.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75108.17743.1
Unique NamemRNA_M-pyrifera_M_contig75108.17743.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A5A8CMR6_CAFRO (Sulfhydryl oxidase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CMR6_CAFRO)

HSP 1 Score: 108 bits (271), Expect = 1.840e-26
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCKEE 261
            PS A++  +  FL  +  LYPC ECAGHF+++L++ PP   S   F  WLCQ HN VN+RL K  FPC+ EAL+ RWGGCGC E+
Sbjct:  286 PSPAEQARLRRFLDDWSYLYPCSECAGHFQALLRENPPDTSSRLAFMAWLCQAHNTVNKRLGKELFPCDVEALEGRWGGCGCAEK 370          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A075B544_ROZAC (Sulfhydryl oxidase n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B544_ROZAC)

HSP 1 Score: 101 bits (252), Expect = 1.450e-25
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCK 255
            P+  QK EM +F+  FG LYPC+EC  HFR ML   PP ++SG EF+ WLC  HN+VN RL K  F CE+  L ERW  CGCK
Sbjct:   74 PTAEQKAEMKSFVEMFGRLYPCEECGQHFREMLGKEPPKVESGVEFQKWLCGLHNKVNLRLGKAEFDCER--LNERWD-CGCK 153          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A482R6D5_9EURY (Thiol oxidase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R6D5_9EURY)

HSP 1 Score: 97.1 bits (240), Expect = 1.030e-22
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCKEE 261
            P+ A K ++ +F  +F   YPC+ECA HFR+ML + PP   S     +WLC  HNRVN RL K  F C  EAL+E +G CGC ++
Sbjct:  154 PTDADKADVVSFFRTFAKFYPCEECAAHFRAMLDESPPDHRSNKHLAVWLCGLHNRVNVRLGKAEFSCTPEALKEAYGECGCFDD 238          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A7S0YFS2_9CHLO (Sulfhydryl oxidase (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YFS2_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 5.750e-22
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCG 249
            PS   + ++   LA    +YPC ECA HF  +LQ++PP LDSGD F  WLC+ HNRVN RL K  F C    ++ RW G G
Sbjct:   50 PSVQTRHDIRTLLALLSRIYPCGECALHFGRLLQEFPPDLDSGDSFRRWLCEAHNRVNDRLGKQRFDCR--LVESRWRGLG 128          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A7S4BLL5_CHRCT (Sulfhydryl oxidase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BLL5_CHRCT)

HSP 1 Score: 87.4 bits (215), Expect = 1.990e-20
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERW--GGCGCKEE 261
            P     ++  +FL + G LYPC  CA  FR ++++ PP + S ++  LWLC+ HNRVN +L KP F C    L  RW  GG  C E+
Sbjct:   28 PDAEHSEQARSFLRALGRLYPCSYCAADFREVMEESPPRVGSREDLSLWLCEMHNRVNDKLGKPIFKCTLSELDRRWRKGGPECYEQ 114          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: UPI001CB94A68 (FAD-linked sulfhydryl oxidase ERV1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94A68)

HSP 1 Score: 89.4 bits (220), Expect = 3.420e-20
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCK 255
            P+  QK+++   +A    +YPC ECA HF+ +L+  P    S DEF  WLC+ HN VN+ L KPTFPCE+  +  RWG   C+
Sbjct:  109 PTRQQKKDVKELMAILSRMYPCKECADHFKEVLRSNPVQAGSQDEFSQWLCRVHNVVNRSLNKPTFPCER--VDARWGKLDCE 189          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A316VMK5_9BASI (Sulfhydryl oxidase (Fragment) n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VMK5_9BASI)

HSP 1 Score: 86.7 bits (213), Expect = 4.830e-20
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCKEE 261
            P+ + ++ +  F+  F  LYPC ECA HF+ +L++ PP   S     LWLC  HN+VN+RL KP FPC+K  L E +  CGC ++
Sbjct:   39 PTQSDRETLLRFMNDFSRLYPCGECAEHFQQLLKELPPQTASRMNAALWLCAAHNKVNERLGKPEFPCDK--LDETYD-CGCGDD 120          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A1D1Z4L0_9ARAE (Sulfhydryl oxidase n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z4L0_9ARAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.920e-20
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWGGCGCKEEG 264
            PS  QK++    +A    LYPC ECA HF+ +L+  P  + S +EF  WLC  HN VN+ L KP FPC++  +  RWG   CK+ G
Sbjct:  113 PSRQQKRDAKDLMAIISRLYPCKECADHFKEILRANPVLVGSQEEFSQWLCYAHNVVNRSLGKPIFPCQR--IDSRWGKLDCKDRG 196          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: L8HE37_ACACA (Sulfhydryl oxidase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HE37_ACACA)

HSP 1 Score: 88.6 bits (218), Expect = 8.030e-20
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERWG 240
            PS   ++ M +FL+ F +LYPC  CA  F   + + PP L+S D    W+C+ HNRVNQ+L KP FPCE+  ++ERWG
Sbjct:  127 PSRQHQERMRSFLSLFPHLYPCKVCAKDFEETMDEIPPELESHDALSDWMCRAHNRVNQQLGKPLFPCER--VRERWG 202          
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Match: A0A7S4F3M1_CHRCT (Sulfhydryl oxidase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3M1_CHRCT)

HSP 1 Score: 87.4 bits (215), Expect = 8.140e-20
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    7 PSTAQKQEMAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVNQRLQKPTFPCEKEALQERW--GGCGCKEE 261
            P     ++  +FL + G LYPC  CA  FR ++++ PP + S ++  LWLC+ HNRVN +L KP F C    L  RW  GG  C E+
Sbjct:   83 PDAEHSEQARSFLRALGRLYPCSYCAADFREVMEESPPRVGSREDLSLWLCEMHNRVNDKLGKPIFKCTLSELDRRWRKGGPECYEQ 169          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75108.17743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CMR6_CAFRO1.840e-2652.94Sulfhydryl oxidase n=3 Tax=Cafeteria roenbergensis... [more]
A0A075B544_ROZAC1.450e-2555.42Sulfhydryl oxidase n=1 Tax=Rozella allomycis (stra... [more]
A0A482R6D5_9EURY1.030e-2247.06Thiol oxidase n=1 Tax=Euryarchaeota archaeon TaxID... [more]
A0A7S0YFS2_9CHLO5.750e-2248.15Sulfhydryl oxidase (Fragment) n=1 Tax=Polytomella ... [more]
A0A7S4BLL5_CHRCT1.990e-2041.38Sulfhydryl oxidase n=1 Tax=Chrysotila carterae Tax... [more]
UPI001CB94A683.420e-2044.58FAD-linked sulfhydryl oxidase ERV1 n=1 Tax=Erigero... [more]
A0A316VMK5_9BASI4.830e-2043.53Sulfhydryl oxidase (Fragment) n=1 Tax=Meira milton... [more]
A0A1D1Z4L0_9ARAE4.920e-2044.19Sulfhydryl oxidase n=1 Tax=Anthurium amnicola TaxI... [more]
L8HE37_ACACA8.030e-2047.44Sulfhydryl oxidase n=1 Tax=Acanthamoeba castellani... [more]
A0A7S4F3M1_CHRCT8.140e-2041.38Sulfhydryl oxidase n=1 Tax=Chrysotila carterae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75108contigM-pyrifera_M_contig75108:9..275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score87.4
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog192875.XP_004342977.1
KEGG koko:K17783,ko:K17891
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006457,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016971,GO:0016972,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0034975,GO:0036094,GO:0042026,GO:0042175,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048037,GO:0050660,GO:0050662,GO:0055114,GO:0097159,GO:0098588,GO:0098805,GO:0098827,GO:0098852,GO:0140096,GO:1901265,GO:1901363
EggNOG free text desc.sulfhydryl oxidase
EggNOG OGs3A426@33154,COG5054@1,KOG3355@2759
EC1.8.3.2
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons1
Model size267
Cds size237
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.4413326-UTR-M-pyrifera_M_contig75108:8..381622816649.4413326-UTR-M-pyrifera_M_contig75108:8..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75108 9..38 +
1692278098.3623111-UTR-M-pyrifera_M_contig75108:8..381692278098.3623111-UTR-M-pyrifera_M_contig75108:8..38Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig75108 9..38 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.4603999-CDS-M-pyrifera_M_contig75108:38..2751622816649.4603999-CDS-M-pyrifera_M_contig75108:38..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75108 39..275 +
1692278098.3753383-CDS-M-pyrifera_M_contig75108:38..2751692278098.3753383-CDS-M-pyrifera_M_contig75108:38..275Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75108 39..275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75108.17743.1prot_M-pyrifera_M_contig75108.17743.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75108 39..275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75108.17743.1

>prot_M-pyrifera_M_contig75108.17743.1 ID=prot_M-pyrifera_M_contig75108.17743.1|Name=mRNA_M-pyrifera_M_contig75108.17743.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MAAFLASFGNLYPCDECAGHFRSMLQDYPPTLDSGDEFELWLCQTHNRVN
QRLQKPTFPCEKEALQERWGGCGCKEEG*
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mRNA from alignment at M-pyrifera_M_contig75108:9..275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75108.17743.1 ID=mRNA_M-pyrifera_M_contig75108.17743.1|Name=mRNA_M-pyrifera_M_contig75108.17743.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig75108:9..275+ (Macrocystis pyrifera P11B4 male)
AGGCAGCCCTCCACGGCGCAGAAGCAGGAAATGGCCGCGTTTCTGGCCAG TTTCGGAAACTTGTACCCTTGTGACGAGTGTGCAGGACATTTCAGGTCCA TGCTCCAGGACTACCCACCCACCCTCGACTCCGGGGACGAGTTTGAGCTC TGGCTCTGCCAAACACACAACAGAGTCAACCAAAGACTGCAAAAACCGAC TTTCCCCTGCGAAAAAGAAGCGCTACAGGAAAGATGGGGTGGATGTGGGT GCAAAGAAGAAGGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75108:9..275+

>mRNA_M-pyrifera_M_contig75108.17743.1 ID=mRNA_M-pyrifera_M_contig75108.17743.1|Name=mRNA_M-pyrifera_M_contig75108.17743.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig75108:9..275+ (Macrocystis pyrifera P11B4 male)
ATGGCCGCGTTTCTGGCCAGTTTCGGAAACTTGTACCCTTGTGACGAGTG
TGCAGGACATTTCAGGTCCATGCTCCAGGACTACCCACCCACCCTCGACT
CCGGGGACGAGTTTGAGCTCTGGCTCTGCCAAACACACAACAGAGTCAAC
CAAAGACTGCAAAAACCGACTTTCCCCTGCGAAAAAGAAGCGCTACAGGA
AAGATGGGGTGGATGTGGGTGCAAAGAAGAAGGATAAATGGCCGCGTTTC
TGGCCAGTTTCGGAAACTTGTACCCTTGTGACGAGTGTGCAGGACATTTC
AGGTCCATGCTCCAGGACTACCCACCCACCCTCGACTCCGGGGACGAGTT
TGAGCTCTGGCTCTGCCAAACACACAACAGAGTCAACCAAAGACTGCAAA
AACCGACTTTCCCCTGCGAAAAAGAAGCGCTACAGGAAAGATGGGGTGGA
TGTGGGTGCAAAGAAGAAGGATAA
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