mRNA_M-pyrifera_M_contig7510.17741.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7510.17741.1
Unique NamemRNA_M-pyrifera_M_contig7510.17741.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: D8LAX5_ECTSI (Nfu_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX5_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 1.250e-88
Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVPFE 450
            +K++EGGWTLMKPVVFG IMDFF+EGK VML EPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFY+GFDP TG VNVQLAGSC GCPSSTVTLKNGVE MLMHYIPEVTAVNAVEDEEL +VNQKEVN+LEDRLKAAGVPFE
Sbjct:  132 SKHDEGGWTLMKPVVFGEIMDFFAEGKPVMLAEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYRGFDPNTGTVNVQLAGSCVGCPSSTVTLKNGVEKMLMHYIPEVTAVNAVEDEELKQVNQKEVNELEDRLKAAGVPFE 281          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A1V9Y986_9STRA (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y986_9STRA)

HSP 1 Score: 213 bits (542), Expect = 5.550e-67
Identity = 103/148 (69.59%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVP 444
            TK E+  W L++  +F  IMDF++ GK VM D+P++TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TG+V VQLAGSC+GCPSS+VTLKNGVENMLMHYIPEV  +    DEEL EVN+KE   LE RL+AAG+P
Sbjct:  118 TKTEDEDWDLLRGQIFATIMDFYASGKPVMSDKPIITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVTVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVRGIKEFVDEELNEVNEKEFQSLEARLRAAGIP 265          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A6G0W9T7_9STRA (Nfu_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9T7_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.330e-64
Identity = 95/147 (64.63%), Postives = 124/147 (84.35%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGV 441
            TK+++  W +++  +FG IMD+++ GK +M DE V+TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDI+Y+GFD TTG+V +QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  +  VEDEEL ++N KE   LE++L+ AG+
Sbjct:  126 TKHDDEDWDVLRGQIFGTIMDYYASGKPIMTDEEVITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIYYRGFDETTGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIQEVEDEELKDINNKEFQTLEEKLRKAGI 272          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A485KKH5_9STRA (Aste57867_8521 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKH5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.290e-63
Identity = 96/148 (64.86%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVP 444
            TK E+  W  ++  +FG IMDF++ GK +M DE V+TDTTILD+DDEVVAMIKELL+ R+RPAVQ+DGGDIFY+GFD   G+V +QLAGSC+GCPSS++TLKNGVENMLMHYIPEV  +  V DEEL ++N++E   LED+L+AAG+P
Sbjct:  128 TKQEDVDWDELRGQIFGTIMDFYASGKPIMTDEEVITDTTILDEDDEVVAMIKELLETRIRPAVQDDGGDIFYRGFDEDRGIVKLQLAGSCAGCPSSSITLKNGVENMLMHYIPEVRGIEEVVDEELKDLNEQEFKTLEDKLRAAGIP 275          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A067CVC8_SAPPC (Nfu_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVC8_SAPPC)

HSP 1 Score: 203 bits (516), Expect = 5.780e-63
Identity = 100/152 (65.79%), Postives = 123/152 (80.92%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFY----KGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVP 444
            TK E+  W L++  +F  IMDF++ GK +M D+P++TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIF     +GFD  TG+V+VQLAGSC+GCPSS+VTLKNGVENMLMHYIPEV  +  V DEEL E+N+KE   LE RL+AAG+P
Sbjct:  120 TKTEDEDWDLLRGQIFATIMDFYATGKPIMSDQPIITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFTTPIRRGFDEETGIVSVQLAGSCAGCPSSSVTLKNGVENMLMHYIPEVQGILEVVDEELNEINEKEFQSLEARLRAAGIP 271          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A1V9Y8Q5_9STRA (Iron-sulfur cluster scaffold protein Nfu n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8Q5_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.280e-62
Identity = 100/148 (67.57%), Postives = 122/148 (82.43%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVP 444
            TK+E+  W +++  +F  IMDF++ GK VMLD+P +TDTTILDDDDEVVAMIKELL+ R+RPAVQ+DGGDIFYKGFD  TG+V VQLAGSC GC SS+VTLKNGVENMLMHYIPEVT V  V+D  L ++N+ E   LE+RL+AAG+P
Sbjct:  164 TKDEDEDWEMLRGQIFATIMDFYATGKPVMLDKPEITDTTILDDDDEVVAMIKELLETRIRPAVQDDGGDIFYKGFDEETGIVKVQLAGSCVGCASSSVTLKNGVENMLMHYIPEVTGVEEVDDG-LKDINENEFKTLEERLRAAGIP 310          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A2D4C4T2_PYTIN (Iron-sulfur cluster scaffold protein Nfu-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T2_PYTIN)

HSP 1 Score: 201 bits (512), Expect = 2.630e-62
Identity = 95/147 (64.63%), Postives = 119/147 (80.95%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGV 441
            TKNE+  W  ++  +F  IMDF++ G+ +M DEP+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD  +G+V +QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +  V+D+EL  +N+ E    ED+L+AAGV
Sbjct:  128 TKNEDEDWDALRSEIFATIMDFYATGEQIMSDEPIVTDTTILPDDDEVVAMIKELLETRIRPSVQEDGGDIFYKGFDEXSGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVQDDELNAINENEFKSFEDKLRAAGV 274          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A8K1CQF8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQF8_PYTOL)

HSP 1 Score: 199 bits (505), Expect = 2.750e-61
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVPFE 450
            TK E+  W  ++  +F +IMDFF+ G+ VM DEP+VTDTTIL DDDEVVAMIKELL+ R+RP+VQEDGGDIFYKGFD   G+V +QLAGSC+GCPSS+VTLKNGVENML HYIPEV  +  V D+EL  +N +E    ED+L+AAGV  E
Sbjct:  125 TKQEDEDWDALRSEIFASIMDFFATGEEVMSDEPIVTDTTILPDDDEVVAMIKELLESRIRPSVQEDGGDIFYKGFDEEKGIVKLQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEVTDDELKALNDQEFKSFEDKLRAAGVMSE 274          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: K3WMX0_GLOUD (Nfu_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMX0_GLOUD)

HSP 1 Score: 198 bits (504), Expect = 5.560e-61
Identity = 97/150 (64.67%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVPFE 450
            TK+E+  W  +K  +F  IMDF++ G+ VM DEPV+TDTTIL DDDEVVAMIKELL++R+RP+VQ+DGGDIFYKGFD  TG+V+VQLAGSC+GCPSS+VTLKNGVENML HYIPEV  +    DE L ++N+KE    E +L+AAGV  E
Sbjct:  137 TKDEDIDWDALKAEIFATIMDFYATGEDVMSDEPVITDTTILPDDDEVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEATGIVHVQLAGSCAGCPSSSVTLKNGVENMLKHYIPEVRGIEEWVDEGLTQLNEKEFQTFEQKLRAAGVMSE 286          
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Match: A0A3R7KYD2_9STRA (Nfu_N domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KYD2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.620e-60
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 TKNEEGGWTLMKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERVRPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLMHYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVPFE 450
            TK+E+  W  +   +F  IMDFF+  + VM DEP+VTDTTIL DDDEVVAMIKELL++R+RP+VQ+DGGDIFYKGFD  TG V+VQLAGSC+GCPSS+VTLK GVENML HYIPEV  +    DEEL  VNQKE   LE++L++ G+P E
Sbjct:  126 TKDEDEDWDALNAEIFATIMDFFASEEEVMSDEPIVTDTTILPDDDEVVAMIKELLEQRIRPSVQDDGGDIFYKGFDEKTGTVSVQLAGSCAGCPSSSVTLKQGVENMLKHYIPEVRTIEEWVDEELNAVNQKEFLTLEEKLRSVGIPSE 275          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7510.17741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX5_ECTSI1.250e-8890.00Nfu_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A1V9Y986_9STRA5.550e-6769.59Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A6G0W9T7_9STRA1.330e-6464.63Nfu_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A485KKH5_9STRA2.290e-6364.86Aste57867_8521 protein n=1 Tax=Aphanomyces stellat... [more]
A0A067CVC8_SAPPC5.780e-6365.79Nfu_N domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9Y8Q5_9STRA1.280e-6267.57Iron-sulfur cluster scaffold protein Nfu n=1 Tax=T... [more]
A0A2D4C4T2_PYTIN2.630e-6264.63Iron-sulfur cluster scaffold protein Nfu-like prot... [more]
A0A8K1CQF8_PYTOL2.750e-6164.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WMX0_GLOUD5.560e-6164.67Nfu_N domain-containing protein n=1 Tax=Globispora... [more]
A0A3R7KYD2_9STRA1.620e-6064.67Nfu_N domain-containing protein n=2 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7510contigM-pyrifera_M_contig7510:11568..12628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.4
Seed ortholog evalue6.1e-65
Seed eggNOG ortholog2880.D8LAX5
Preferred nameNFU4
KEGG koko:K22074
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006880,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0017076,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030554,GO:0031163,GO:0031974,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051186,GO:0051235,GO:0051238,GO:0051604,GO:0051641,GO:0051651,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097428,GO:0097577,GO:0098771,GO:0106035,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
Ec32 ortholog descriptionScaffold protein Nfu/NifU, N-terminal
Ec32 orthologEc-27_006080.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons3
Model size456
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7510.17741.1prot_M-pyrifera_M_contig7510.17741.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7510 11568..12598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.3375633-CDS-M-pyrifera_M_contig7510:11567..116781622816649.3375633-CDS-M-pyrifera_M_contig7510:11567..11678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 11568..11678 -
1692278098.2921782-CDS-M-pyrifera_M_contig7510:11567..116781692278098.2921782-CDS-M-pyrifera_M_contig7510:11567..11678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 11568..11678 -
1622816649.347782-CDS-M-pyrifera_M_contig7510:11911..120791622816649.347782-CDS-M-pyrifera_M_contig7510:11911..12079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 11912..12079 -
1692278098.3056774-CDS-M-pyrifera_M_contig7510:11911..120791692278098.3056774-CDS-M-pyrifera_M_contig7510:11911..12079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 11912..12079 -
1622816649.3576763-CDS-M-pyrifera_M_contig7510:12451..125981622816649.3576763-CDS-M-pyrifera_M_contig7510:12451..12598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 12452..12598 -
1692278098.3164687-CDS-M-pyrifera_M_contig7510:12451..125981692278098.3164687-CDS-M-pyrifera_M_contig7510:12451..12598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7510 12452..12598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.3677917-UTR-M-pyrifera_M_contig7510:12598..126281622816649.3677917-UTR-M-pyrifera_M_contig7510:12598..12628Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7510 12599..12628 -
1692278098.3281896-UTR-M-pyrifera_M_contig7510:12598..126281692278098.3281896-UTR-M-pyrifera_M_contig7510:12598..12628Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7510 12599..12628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7510.17741.1

>prot_M-pyrifera_M_contig7510.17741.1 ID=prot_M-pyrifera_M_contig7510.17741.1|Name=mRNA_M-pyrifera_M_contig7510.17741.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MKPVVFGAIMDFFSEGKAVMLDEPVVTDTTILDDDDEVVAMIKELLQERV
RPAVQEDGGDIFYKGFDPTTGVVNVQLAGSCSGCPSSTVTLKNGVENMLM
HYIPEVTAVNAVEDEELIEVNQKEVNQLEDRLKAAGVPFEA*
back to top

mRNA from alignment at M-pyrifera_M_contig7510:11568..12628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7510.17741.1 ID=mRNA_M-pyrifera_M_contig7510.17741.1|Name=mRNA_M-pyrifera_M_contig7510.17741.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1061bp|location=Sequence derived from alignment at M-pyrifera_M_contig7510:11568..12628- (Macrocystis pyrifera P11B4 male)
ACGAAGAACGAAGAAGGGGGCTGGACGCTGATGAAGCCCGTCGTGTTCGG GGCGATCATGGACTTTTTTTCCGAGGGCAAGGCGGTGATGCTGGACGAGC CCGTGGTGACGGACACCACGATTCTGGACGATGACGATGAAGTTGTGGCG ATGATCAAGGAGCTGCTGCAAGAGCGGGTGAGGGAGAAAGCCACCCACCT CTTGTGTGTGTTTTCCTGTCCACCCCCTCGCTCTGCCCGCCTCTGCCTGT CTGTCCAAAAACTCCCGCCTAAAAAAAGTGAAAAATCTTCTTGAAAAACG CCGTTGGACCCAAACGTTGGAAACATCGTTGGAAACTGCGTTCGAGAAAT GTTACGTTTCGGCGGAGTGTTGCGTGTCGGAGAGGTGTTACGTTTCGGGA AAACGTTGGAGGAATCCACCCGAAATTTTTTTTTCGGGGAAATCACTTCC GCTACACGCGTACCAGTGTACCAGTACGTGTTCTGCATGGTTTTTGGCCC GAGAAAACTTGAACGATTTTTGTTGTTTTTTTTTTTGTGACGCGAAAAGG TGAGGCCAGCGGTGCAGGAGGACGGGGGTGACATCTTCTACAAGGGCTTC GACCCTACCACGGGAGTCGTGAACGTGCAGCTCGCTGGATCGTGCTCGGG GTGCCCCAGCTCGACCGTGACCCTCAAGAACGGCGTGGAGAATATGCTCA TGCACTACATACCCGAGGTGTGATGCTGCCAACAACGCACTTTTTGGGTG ATAAGGGTGTACATATTCGCGATTTGTGGGTTGTTGACTCAACGCATATT CCCGTTCAGTAAACCGCGCGTTCCTCATCCCTTCCCCCCTTCTCTCTCTA GCGACGGCCGGCTGACGGCGCTCTCCGTTATCCCTTTCTTTTTGCACCGC AACAACCGTTCGTACGGAATGACCCACCCCGCTTCACTTTACATTTGCAG GTGACGGCTGTCAACGCCGTGGAAGACGAAGAACTGATCGAGGTCAACCA AAAAGAAGTCAACCAGCTGGAGGACCGGCTCAAAGCGGCTGGTGTTCCTT TCGAGGCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7510:11568..12628-

>mRNA_M-pyrifera_M_contig7510.17741.1 ID=mRNA_M-pyrifera_M_contig7510.17741.1|Name=mRNA_M-pyrifera_M_contig7510.17741.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig7510:11568..12628- (Macrocystis pyrifera P11B4 male)
ATGAAGCCCGTCGTGTTCGGGGCGATCATGGACTTTTTTTCCGAGGGCAA
GGCGGTGATGCTGGACGAGCCCGTGGTGACGGACACCACGATTCTGGACG
ATGACGATGAAGTTGTGGCGATGATCAAGGAGCTGCTGCAAGAGCGGATG
AAGCCCGTCGTGTTCGGGGCGATCATGGACTTTTTTTCCGAGGGCAAGGC
GGTGATGCTGGACGAGCCCGTGGTGACGGACACCACGATTCTGGACGATG
ACGATGAAGTTGTGGCGATGATCAAGGAGCTGCTGCAAGAGCGGGTGAGG
CCAGCGGTGCAGGAGGACGGGGGTGACATCTTCTACAAGGGCTTCGACCC
TACCACGGGAGTCGTGAACGTGCAGCTCGCTGGATCGTGCTCGGGGTGCC
CCAGCTCGACCGTGACCCTCAAGAACGGCGTGGAGAATATGCTCATGCAC
TACATACCCGAGGTGAGGCCAGCGGTGCAGGAGGACGGGGGTGACATCTT
CTACAAGGGCTTCGACCCTACCACGGGAGTCGTGAACGTGCAGCTCGCTG
GATCGTGCTCGGGGTGCCCCAGCTCGACCGTGACCCTCAAGAACGGCGTG
GAGAATATGCTCATGCACTACATACCCGAGGTGACGGCTGTCAACGCCGT
GGAAGACGAAGAACTGATCGAGGTCAACCAAAAAGAAGTCAACCAGCTGG
AGGACCGGCTCAAAGCGGCTGGTGTTCCTTTCGAGGCGTGAGTGACGGCT
GTCAACGCCGTGGAAGACGAAGAACTGATCGAGGTCAACCAAAAAGAAGT
CAACCAGCTGGAGGACCGGCTCAAAGCGGCTGGTGTTCCTTTCGAGGCGT
GA
back to top