mRNA_M-pyrifera_M_contig75099.17740.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75099.17740.1
Unique NamemRNA_M-pyrifera_M_contig75099.17740.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: A0A5A8D0P2_CAFRO (CDC73_C domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D0P2_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 6.090e-40
Identity = 59/120 (49.17%), Postives = 86/120 (71.67%), Query Frame = 1 
Query:    1 ITRRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            I R+  A  +++H++DS  KL P  +D++VA+F HG DWQF+GWRW R  G PD+TPVE+FDR  GF LH++DE  P ++R+W+V  L +SR++RH D  +V RFW  VD+F+ + +P L
Sbjct:  346 IERQTTAGPRRYHIMDSTDKLQPGDWDKVVAIFTHGADWQFKGWRWGRAAGRPDITPVEVFDRTRGFFLHYEDEPVPPSVRRWRVDALGVSRSQRHLDTGLVARFWQTVDEFVSLKKPFL 465
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: A0A8B7XYN1_ACAPL (parafibromin-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7XYN1_ACAPL)

HSP 1 Score: 116 bits (291), Expect = 3.860e-28
Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:    7 RRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            R+ D     + VVD+V+KLSP+ +DR+V VFA GP WQF+GW W   +G    +PV+IF R+ GFH+ FD+      ++KW V  L +SRT+RH D   + +FW ++D +M  H+  L
Sbjct:  414 RKDDGSSVPYRVVDAVNKLSPQDWDRVVGVFAQGPAWQFKGWPWLLSDG----SPVDIFARIRGFHIKFDEMKLDPNIKKWNVHVLVVSRTKRHLDRACLLKFWEILDKYMIKHKSHL 527
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: T1JAK9_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JAK9_STRMM)

HSP 1 Score: 108 bits (271), Expect = 1.470e-26
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:    1 ITRRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            I RR D V   F V+D++ KL  E +DR+VAVF  GP WQF+GW W          P+EIF R+ GFHL +D+ +    + KW V  + +SRT+R+ D   ++ FW ++D+ M  ++P L
Sbjct:  172 IQRRRDGVTVPFRVIDNICKLEREDWDRVVAVFVQGPAWQFKGWPWGG-------KPIEIFCRIKGFHLMWDEMNLDSNVAKWAVRVIQLSRTKRYLDVANLKGFWEILDEHMSKNKPHL 284
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: UPI0001CBA54E (parafibromin-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA54E)

HSP 1 Score: 108 bits (270), Expect = 3.630e-26
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:   22 VVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            V   + ++D+ SKL P+ +DR+VAVF  GP WQF+GW W   +G    +PV+IF R+  FHL F++ +    ++KW V  L I+R +RH D   + RFW ++D +M  H+  L
Sbjct:  207 VTVPYRIIDTPSKLQPQDWDRVVAVFVQGPAWQFKGWPWLLSDG----SPVDIFARIKAFHLKFEEANLDPNIKKWDVCILKINRNKRHLDRATLLRFWEIMDKYMVKHKSHL 315
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: A0A7S3K0K2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0K2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.060e-25
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 1 
Query:    7 RRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPK 357
            +R D +++ + ++D+  KLSP+ +DRIVAVFA GP WQF+GWR +         PVE+F RV G HL FDDE +P  + +W V  L +S+T+RH D  +V  FW  ++D ++  + K
Sbjct:  332 QRSDGLMQPYRIIDNPIKLSPKEFDRIVAVFAMGPTWQFKGWRISE--------PVELFQRVLGIHLQFDDELTPTNITQWNVRILKLSKTKRHLDASLVLDFWRSLEDHIQKIKAK 440
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: UPI000719D56D (parafibromin-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719D56D)

HSP 1 Score: 106 bits (265), Expect = 1.310e-25
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1 
Query:    1 ITRRGDA-VVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            I RR D  +   + V+D+  KLSP+ +DR+VAVF  GP WQF+GW WN         PVEIFDR+  FH+ +D+      + KW V  L +S+T+RH D   + +FW  +D +M  ++P L
Sbjct:  179 IQRRKDGGLTVPYRVIDNPLKLSPDDWDRVVAVFVQGPAWQFKGWPWNG-------NPVEIFDRIKAFHIKWDELPLDANVAKWSVHILQLSKTKRHLDRASLIKFWEYLDKYMIKYKPHL 292
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: A0A6P8J428_ACTTE (parafibromin-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J428_ACTTE)

HSP 1 Score: 108 bits (271), Expect = 2.420e-25
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:   22 VVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            V   + V+D+V++L P  ++R+VAVF  GP WQF+GW W   +G    +PV+IF ++ GFHL F+D  +   ++KW V  L I+R  RH D   +  FW+ +D FM  ++P+L
Sbjct:  427 VTVPYRVIDNVARLQPNDWNRVVAVFVQGPTWQFKGWPWLLADG----SPVDIFTKIRGFHLKFEDVKTEPNVQKWDVQVLTINRNTRHFDKASINTFWTTMDKFMVKNKPQL 535
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: UPI00145591E0 (parafibromin-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI00145591E0)

HSP 1 Score: 108 bits (270), Expect = 3.240e-25
Identity = 46/118 (38.98%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    7 RRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            R+ D     + V+D+++KL+P+ +DR+VAVF  GP WQF+GW W   +G    +PV+IF R+ GFH+ F +      ++KW +  L ISR +RH D   + +FW ++D +M  H+  L
Sbjct:  415 RKEDGSTVPYRVMDTINKLTPQDWDRVVAVFVQGPAWQFKGWPWLLSDG----SPVDIFARIRGFHIKFTEMKLDPNVKKWNLQVLDISRQKRHLDRASLLKFWEILDRYMVKHKTNL 528
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: A7SKC9_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKC9_NEMVE)

HSP 1 Score: 107 bits (268), Expect = 5.830e-25
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 1 
Query:    1 ITRRGDA-VVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFM 339
            I RR DA     + VVD+ ++L P  +DR+VAVF  GP WQF+GW W   +G    +PV+IF +  GFHL +DD  +   ++KW VT L I+R  RH D   +  FW+ +D FM
Sbjct:  401 IQRRKDASTTVPYRVVDNPTRLQPNEWDRVVAVFVQGPTWQFKGWPWLLADG----SPVDIFTKTRGFHLKYDDTKTDPNVQKWDVTILTINRNTRHLDKASINSFWTNLDKFM 510
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BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Match: UPI0012D47885 (parafibromin n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D47885)

HSP 1 Score: 107 bits (266), Expect = 1.130e-24
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1 
Query:    1 ITRRGDA-VVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGEGEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPVVVQRFWSLVDDFMRVHRPKL 360
            + RR D  V   + V+D+ S+LSP+ + R+VAVF  GP WQF+GW WN         PVEIF ++  FHL FD+      + +W VT L +SRT+RH D   +  FW  +D +M  ++P L
Sbjct:  410 LQRRKDGNVTVPYRVIDNPSRLSPQDWHRVVAVFVMGPAWQFKGWPWNG-------NPVEIFSQICAFHLRFDEMKLDANVARWAVTVLNLSRTKRHLDRAALMTFWERLDSYMMKNKPDL 523
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75099.17740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D0P2_CAFRO6.090e-4049.17CDC73_C domain-containing protein n=2 Tax=Cafeteri... [more]
A0A8B7XYN1_ACAPL3.860e-2843.22parafibromin-like n=2 Tax=Valvatida TaxID=41166 Re... [more]
T1JAK9_STRMM1.470e-2640.83Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
UPI0001CBA54E3.630e-2640.71parafibromin-like n=1 Tax=Saccoglossus kowalevskii... [more]
A0A7S3K0K2_9STRA1.060e-2542.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI000719D56D1.310e-2541.32parafibromin-like n=1 Tax=Priapulus caudatus TaxID... [more]
A0A6P8J428_ACTTE2.420e-2540.71parafibromin-like n=1 Tax=Actinia tenebrosa TaxID=... [more]
UPI00145591E03.240e-2538.98parafibromin-like isoform X1 n=2 Tax=Asterias rube... [more]
A7SKC9_NEMVE5.830e-2543.86Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI0012D478851.130e-2441.32parafibromin n=1 Tax=Contarinia nasturtii TaxID=26... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75099contigM-pyrifera_M_contig75099:663..1022 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score107.5
Seed ortholog evalue4.5e-21
Seed eggNOG ortholog126957.SMAR010778-PA
Preferred namehyx
KEGG koko:K15175
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001654,GO:0001745,GO:0002009,GO:0002165,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007478,GO:0007480,GO:0007552,GO:0007560,GO:0008023,GO:0008134,GO:0008150,GO:0008152,GO:0008407,GO:0008586,GO:0008587,GO:0008589,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022416,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045880,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048513,GO:0048518,GO:0048522,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0060429,GO:0060562,GO:0060828,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090263,GO:0090304,GO:0090596,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
EggNOG OGs38GJ4@33154,3BD4B@33208,3CRR6@33213,41VVF@6656,COG5157@1,KOG3786@2759
COG Functional cat.K
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.3034432-CDS-M-pyrifera_M_contig75099:662..10221622816649.3034432-CDS-M-pyrifera_M_contig75099:662..1022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75099 663..1022 -
1692278098.2753036-CDS-M-pyrifera_M_contig75099:662..10221692278098.2753036-CDS-M-pyrifera_M_contig75099:662..1022Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75099 663..1022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75099.17740.1prot_M-pyrifera_M_contig75099.17740.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75099 663..1022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75099.17740.1

>prot_M-pyrifera_M_contig75099.17740.1 ID=prot_M-pyrifera_M_contig75099.17740.1|Name=mRNA_M-pyrifera_M_contig75099.17740.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
ITRRGDAVVKQFHVVDSVSKLSPEVYDRIVAVFAHGPDWQFRGWRWNRGE
GEPDLTPVEIFDRVPGFHLHFDDEDSPETLRKWKVTGLPISRTRRHHDPV
VVQRFWSLVDDFMRVHRPKL
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mRNA from alignment at M-pyrifera_M_contig75099:663..1022-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75099.17740.1 ID=mRNA_M-pyrifera_M_contig75099.17740.1|Name=mRNA_M-pyrifera_M_contig75099.17740.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig75099:663..1022- (Macrocystis pyrifera P11B4 male)
ATCACGCGGCGTGGAGATGCCGTGGTGAAGCAGTTCCACGTGGTGGACTC
CGTGTCAAAGCTCAGCCCCGAGGTGTACGATCGAATCGTGGCGGTGTTCG
CGCATGGGCCAGACTGGCAGTTTCGTGGGTGGAGGTGGAACAGGGGGGAA
GGAGAGCCTGATCTGACACCCGTCGAAATCTTTGACAGAGTGCCCGGGTT
CCACCTCCACTTCGACGACGAAGACTCCCCAGAAACACTCCGCAAGTGGA
AGGTCACGGGGCTCCCAATCTCCAGGACCAGAAGACACCACGACCCAGTC
GTCGTGCAGCGGTTCTGGTCTCTCGTGGACGACTTCATGCGTGTCCATCG
CCCAAAACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75099:663..1022-

>mRNA_M-pyrifera_M_contig75099.17740.1 ID=mRNA_M-pyrifera_M_contig75099.17740.1|Name=mRNA_M-pyrifera_M_contig75099.17740.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig75099:663..1022- (Macrocystis pyrifera P11B4 male)
ATCACGCGGCGTGGAGATGCCGTGGTGAAGCAGTTCCACGTGGTGGACTC
CGTGTCAAAGCTCAGCCCCGAGGTGTACGATCGAATCGTGGCGGTGTTCG
CGCATGGGCCAGACTGGCAGTTTCGTGGGTGGAGGTGGAACAGGGGGGAA
GGAGAGCCTGATCTGACACCCGTCGAAATCTTTGACAGAGTGCCCGGGTT
CCACCTCCACTTCGACGACGAAGACTCCCCAGAAACACTCCGCAAGTGGA
AGGTCACGGGGCTCCCAATCTCCAGGACCAGAAGACACCACGACCCAGTC
GTCGTGCAGCGGTTCTGGTCTCTCGTGGACGACTTCATGCGTGTCCATCG
CCCAAAACTCATCACGCGGCGTGGAGATGCCGTGGTGAAGCAGTTCCACG
TGGTGGACTCCGTGTCAAAGCTCAGCCCCGAGGTGTACGATCGAATCGTG
GCGGTGTTCGCGCATGGGCCAGACTGGCAGTTTCGTGGGTGGAGGTGGAA
CAGGGGGGAAGGAGAGCCTGATCTGACACCCGTCGAAATCTTTGACAGAG
TGCCCGGGTTCCACCTCCACTTCGACGACGAAGACTCCCCAGAAACACTC
CGCAAGTGGAAGGTCACGGGGCTCCCAATCTCCAGGACCAGAAGACACCA
CGACCCAGTCGTCGTGCAGCGGTTCTGGTCTCTCGTGGACGACTTCATGC
GTGTCCATCGCCCAAAACTC
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