mRNA_M-pyrifera_M_contig75088.17735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig75088.17735.1
Unique NamemRNA_M-pyrifera_M_contig75088.17735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig75088.17735.1 vs. uniprot
Match: A0A6H5JSC9_9PHAE (HK protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSC9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.540e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    7 NFESLARDRIAAFSLTADVVKLTDEEAEWLSGVPGDEALRDPSCLKTLFPAAK 165
            ++ESLAR+RI  FSLTADVVKLTDEEAEWL G+PG+ ALRDP CL+  FPAAK
Sbjct:  276 DYESLARERIMDFSLTADVVKLTDEEAEWLCGIPGEVALRDPPCLQRFFPAAK 328
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BLAST of mRNA_M-pyrifera_M_contig75088.17735.1 vs. uniprot
Match: A0A1D2A3Y7_AUXPR (PfkB domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3Y7_AUXPR)

HSP 1 Score: 48.5 bits (114), Expect = 4.410e-5
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 QANFESLARDRIAAFSLTADVVKLTDEEAEWLSGVPGDEALRDPSCLKTLFPAAK 165
            +A  E++A+  I  F   AD++K+T+EEAEWL G+PG  AL  P  +    P A+
Sbjct:  217 EAQGEAVAKATILDFIAAADLLKVTEEEAEWLWGIPGTRALEHPEEVLAKLPGAR 271
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig75088.17735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSC9_9PHAE2.540e-1875.47HK protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A... [more]
A0A1D2A3Y7_AUXPR4.410e-541.82PfkB domain-containing protein n=2 Tax=Auxenochlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig75088contigM-pyrifera_M_contig75088:630..794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7FK00
Preferred nameFRK2
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000427,GO:0000428,GO:0003674,GO:0003824,GO:0004396,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0005975,GO:0005996,GO:0006000,GO:0006082,GO:0006139,GO:0006351,GO:0006355,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008610,GO:0008865,GO:0009058,GO:0009059,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009662,GO:0009889,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010556,GO:0016020,GO:0016043,GO:0016051,GO:0016053,GO:0016070,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019200,GO:0019219,GO:0019222,GO:0019318,GO:0019438,GO:0019752,GO:0030054,GO:0030880,GO:0031323,GO:0031326,GO:0032774,GO:0032787,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042644,GO:0042646,GO:0042793,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043621,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046686,GO:0046835,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.carbohydrate kinase activity
EggNOG OGsCOG0524@1,KOG2855@2759
EC2.7.1.4
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.1206174-CDS-M-pyrifera_M_contig75088:629..7941622816649.1206174-CDS-M-pyrifera_M_contig75088:629..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75088 630..794 -
1692278098.197956-CDS-M-pyrifera_M_contig75088:629..7941692278098.197956-CDS-M-pyrifera_M_contig75088:629..794Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig75088 630..794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig75088.17735.1prot_M-pyrifera_M_contig75088.17735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig75088 630..794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig75088.17735.1

>prot_M-pyrifera_M_contig75088.17735.1 ID=prot_M-pyrifera_M_contig75088.17735.1|Name=mRNA_M-pyrifera_M_contig75088.17735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
QANFESLARDRIAAFSLTADVVKLTDEEAEWLSGVPGDEALRDPSCLKTL
FPAAK
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mRNA from alignment at M-pyrifera_M_contig75088:630..794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig75088.17735.1 ID=mRNA_M-pyrifera_M_contig75088.17735.1|Name=mRNA_M-pyrifera_M_contig75088.17735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig75088:630..794- (Macrocystis pyrifera P11B4 male)
CAGGCCAACTTCGAGTCGCTAGCGCGGGACCGCATAGCAGCCTTCTCCCT
GACAGCGGACGTTGTGAAGCTCACCGACGAAGAGGCGGAGTGGCTTTCGG
GAGTTCCGGGAGATGAGGCGTTGCGCGACCCGTCCTGCCTGAAAACGTTG
TTTCCGGCGGCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig75088:630..794-

>mRNA_M-pyrifera_M_contig75088.17735.1 ID=mRNA_M-pyrifera_M_contig75088.17735.1|Name=mRNA_M-pyrifera_M_contig75088.17735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig75088:630..794- (Macrocystis pyrifera P11B4 male)
CAGGCCAACTTCGAGTCGCTAGCGCGGGACCGCATAGCAGCCTTCTCCCT
GACAGCGGACGTTGTGAAGCTCACCGACGAAGAGGCGGAGTGGCTTTCGG
GAGTTCCGGGAGATGAGGCGTTGCGCGACCCGTCCTGCCTGAAAACGTTG
TTTCCGGCGGCGAAGCAGGCCAACTTCGAGTCGCTAGCGCGGGACCGCAT
AGCAGCCTTCTCCCTGACAGCGGACGTTGTGAAGCTCACCGACGAAGAGG
CGGAGTGGCTTTCGGGAGTTCCGGGAGATGAGGCGTTGCGCGACCCGTCC
TGCCTGAAAACGTTGTTTCCGGCGGCGAAG
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