prot_M-pyrifera_M_contig7501.17721.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig7501.17721.1
Unique Nameprot_M-pyrifera_M_contig7501.17721.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length40
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7501.17721.1 vs. uniprot
Match: UPI001CD4B748 (GIY-YIG nuclease family protein n=1 Tax=Rossellomorea aquimaris TaxID=189382 RepID=UPI001CD4B748)

HSP 1 Score: 50.8 bits (120), Expect = 2.660e-6
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 0 
Query:    1 VYCLNLEGGNKYVGRTNNFDMRMKDHSLGDGAKWTQRHK 39
            +Y L LEGGN YVG+T+N + R   H  G G++WTQ +K
Sbjct:   12 IYILELEGGNYYVGQTDNLESRFSKHERGKGSQWTQIYK 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7501.17721.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CD4B7482.660e-651.28GIY-YIG nuclease family protein n=1 Tax=Rossellomo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 1..39
e-value: 2.5E-8
score: 35.6
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 5..37
e-value: 5.2E-7
score: 29.9
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 1..39
score: 9.877

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7501contigM-pyrifera_M_contig7501:4169..4288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7501.17721.1mRNA_M-pyrifera_M_contig7501.17721.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig7501 4169..4288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig7501.17721.1 ID=prot_M-pyrifera_M_contig7501.17721.1|Name=mRNA_M-pyrifera_M_contig7501.17721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
VYCLNLEGGNKYVGRTNNFDMRMKDHSLGDGAKWTQRHK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035901GIY-YIG_endonuc_sf
IPR000305GIY-YIG_endonuc