mRNA_M-pyrifera_M_contig7501.17721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7501.17721.1
Unique NamemRNA_M-pyrifera_M_contig7501.17721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7501.17721.1 vs. uniprot
Match: UPI001CD4B748 (GIY-YIG nuclease family protein n=1 Tax=Rossellomorea aquimaris TaxID=189382 RepID=UPI001CD4B748)

HSP 1 Score: 50.8 bits (120), Expect = 2.660e-6
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 VYCLNLEGGNKYVGRTNNFDMRMKDHSLGDGAKWTQRHK 117
            +Y L LEGGN YVG+T+N + R   H  G G++WTQ +K
Sbjct:   12 IYILELEGGNYYVGQTDNLESRFSKHERGKGSQWTQIYK 50
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7501.17721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CD4B7482.660e-651.28GIY-YIG nuclease family protein n=1 Tax=Rossellomo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7501contigM-pyrifera_M_contig7501:4169..4288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.3151507-CDS-M-pyrifera_M_contig7501:4168..42881622816648.3151507-CDS-M-pyrifera_M_contig7501:4168..4288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7501 4169..4288 +
1692278097.7102687-CDS-M-pyrifera_M_contig7501:4168..42881692278097.7102687-CDS-M-pyrifera_M_contig7501:4168..4288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7501 4169..4288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7501.17721.1prot_M-pyrifera_M_contig7501.17721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7501 4169..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7501.17721.1

>prot_M-pyrifera_M_contig7501.17721.1 ID=prot_M-pyrifera_M_contig7501.17721.1|Name=mRNA_M-pyrifera_M_contig7501.17721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
VYCLNLEGGNKYVGRTNNFDMRMKDHSLGDGAKWTQRHK*
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mRNA from alignment at M-pyrifera_M_contig7501:4169..4288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7501.17721.1 ID=mRNA_M-pyrifera_M_contig7501.17721.1|Name=mRNA_M-pyrifera_M_contig7501.17721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig7501:4169..4288+ (Macrocystis pyrifera P11B4 male)
GTGTACTGCCTCAACCTAGAGGGTGGGAACAAATACGTGGGCAGGACCAA
CAACTTCGACATGCGCATGAAAGATCACTCCCTCGGGGACGGCGCCAAGT
GGACTCAGCGGCACAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7501:4169..4288+

>mRNA_M-pyrifera_M_contig7501.17721.1 ID=mRNA_M-pyrifera_M_contig7501.17721.1|Name=mRNA_M-pyrifera_M_contig7501.17721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig7501:4169..4288+ (Macrocystis pyrifera P11B4 male)
GTGTACTGCCTCAACCTAGAGGGTGGGAACAAATACGTGGGCAGGACCAA
CAACTTCGACATGCGCATGAAAGATCACTCCCTCGGGGACGGCGCCAAGT
GGACTCAGCGGCACAAGTGAGTGTACTGCCTCAACCTAGAGGGTGGGAAC
AAATACGTGGGCAGGACCAACAACTTCGACATGCGCATGAAAGATCACTC
CCTCGGGGACGGCGCCAAGTGGACTCAGCGGCACAAGTGA
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