mRNA_M-pyrifera_M_contig7497.17712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7497.17712.1
Unique NamemRNA_M-pyrifera_M_contig7497.17712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7497.17712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7497contigM-pyrifera_M_contig7497:7947..8318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.548885-CDS-M-pyrifera_M_contig7497:7946..82671622816647.548885-CDS-M-pyrifera_M_contig7497:7946..8267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7497 7947..8267 +
1692278097.209776-CDS-M-pyrifera_M_contig7497:7946..82671692278097.209776-CDS-M-pyrifera_M_contig7497:7946..8267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7497 7947..8267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.5616026-UTR-M-pyrifera_M_contig7497:8267..83181622816647.5616026-UTR-M-pyrifera_M_contig7497:8267..8318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7497 8268..8318 +
1692278097.2220578-UTR-M-pyrifera_M_contig7497:8267..83181692278097.2220578-UTR-M-pyrifera_M_contig7497:8267..8318Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7497 8268..8318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7497.17712.1prot_M-pyrifera_M_contig7497.17712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7497 7947..8267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7497.17712.1

>prot_M-pyrifera_M_contig7497.17712.1 ID=prot_M-pyrifera_M_contig7497.17712.1|Name=mRNA_M-pyrifera_M_contig7497.17712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
VLTDCFNNAFNPVNRTAVSGDVAKFACRFSRRFYGESTTVRDQLTSCPGR
ISGSPRLSLDPAGSGGGTSWSRRRCQASRKGNEGTRARTEVAFSGQIRFS
LTGPLS*
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mRNA from alignment at M-pyrifera_M_contig7497:7947..8318+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7497.17712.1 ID=mRNA_M-pyrifera_M_contig7497.17712.1|Name=mRNA_M-pyrifera_M_contig7497.17712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig7497:7947..8318+ (Macrocystis pyrifera P11B4 male)
GTTCTTACCGACTGTTTCAACAACGCCTTCAACCCGGTCAACAGGACGGC
GGTGTCTGGGGACGTGGCCAAATTTGCGTGCCGGTTCTCACGCCGTTTTT
ACGGCGAAAGTACTACGGTGCGAGACCAGCTGACATCCTGTCCCGGAAGA
ATTTCGGGTAGCCCCCGACTATCGCTTGATCCGGCGGGTTCTGGTGGGGG
AACCTCATGGAGCCGACGACGTTGCCAGGCGTCGCGGAAGGGAAACGAAG
GGACGCGCGCTAGGACAGAGGTAGCCTTTTCTGGCCAAATACGTTTTTCT
CTGACGGGGCCCTTAAGCTGAGCAATTGCCCAATGCCACTGGGATATTAT
TTGGGGGTTTACACTATGTAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7497:7947..8318+

>mRNA_M-pyrifera_M_contig7497.17712.1 ID=mRNA_M-pyrifera_M_contig7497.17712.1|Name=mRNA_M-pyrifera_M_contig7497.17712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig7497:7947..8318+ (Macrocystis pyrifera P11B4 male)
GTTCTTACCGACTGTTTCAACAACGCCTTCAACCCGGTCAACAGGACGGC
GGTGTCTGGGGACGTGGCCAAATTTGCGTGCCGGTTCTCACGCCGTTTTT
ACGGCGAAAGTACTACGGTGCGAGACCAGCTGACATCCTGTCCCGGAAGA
ATTTCGGGTAGCCCCCGACTATCGCTTGATCCGGCGGGTTCTGGTGGGGG
AACCTCATGGAGCCGACGACGTTGCCAGGCGTCGCGGAAGGGAAACGAAG
GGACGCGCGCTAGGACAGAGGTAGCCTTTTCTGGCCAAATACGTTTTTCT
CTGACGGGGCCCTTAAGCTGAGTTCTTACCGACTGTTTCAACAACGCCTT
CAACCCGGTCAACAGGACGGCGGTGTCTGGGGACGTGGCCAAATTTGCGT
GCCGGTTCTCACGCCGTTTTTACGGCGAAAGTACTACGGTGCGAGACCAG
CTGACATCCTGTCCCGGAAGAATTTCGGGTAGCCCCCGACTATCGCTTGA
TCCGGCGGGTTCTGGTGGGGGAACCTCATGGAGCCGACGACGTTGCCAGG
CGTCGCGGAAGGGAAACGAAGGGACGCGCGCTAGGACAGAGGTAGCCTTT
TCTGGCCAAATACGTTTTTCTCTGACGGGGCCCTTAAGCTGA
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