mRNA_M-pyrifera_M_contig74938.17710.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74938.17710.1
Unique NamemRNA_M-pyrifera_M_contig74938.17710.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A517PUP1_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PUP1_9PLAN)

HSP 1 Score: 179 bits (455), Expect = 5.270e-57
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCFEPFSAQLMLLKDYFAGLRERLQVLMSFMIISLSDSIGTRQV 315
            MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCFEPFSAQLMLLKDYFAGLRERLQVLMSFMIISLSDSIGTRQV
Sbjct:    1 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCFEPFSAQLMLLKDYFAGLRERLQVLMSFMIISLSDSIGTRQV 89
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A518ACD8_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ACD8_9PLAN)

HSP 1 Score: 134 bits (337), Expect = 5.190e-39
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCFEPFSAQLMLLKDYFAGLRERLQVLMSFMIISLSDSIGTRQ 312
            MPWERTLL NDVGEPDAPTKSTSAYLS+ASG+L YATP LPQ  RF  EPFS+Q+MLL+  F GLR+RLQVLMSFMIISL  SIG  Q
Sbjct:    1 MPWERTLLMNDVGEPDAPTKSTSAYLSDASGNLLYATPSLPQTVRFFLEPFSSQMMLLRADFTGLRDRLQVLMSFMIISLPVSIGLGQ 88
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A517RL27_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RL27_9PLAN)

HSP 1 Score: 65.5 bits (158), Expect = 7.250e-12
Identity = 32/48 (66.67%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCF 192
            MPWERTLL N VGEPDAPTKS  AYLSN    + YATP LP   R  F
Sbjct:    1 MPWERTLLINYVGEPDAPTKSVKAYLSNLVFQMLYATPILPLTIRLYF 48
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A518II10_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518II10_9PLAN)

HSP 1 Score: 63.2 bits (152), Expect = 6.300e-11
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCFEPFSAQL 213
            MPWERTLL N VGEPDAPTKS  AYLSN    + YA P LP   R   +  S+ +
Sbjct:    1 MPWERTLLINFVGEPDAPTKSVKAYLSNIVFQMLYAMPTLPLTIRLYLKDRSSSI 55
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A517WQ67_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQ67_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.020e-8
Identity = 27/48 (56.25%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDLPQKTRFCF 192
            M WERTLL N +GEPDAP KS  AYLS     + YA   LP   R CF
Sbjct:    1 MLWERTLLNNFIGEPDAPIKSAEAYLSVLIFQMLYAMVSLPLMIRMCF 48
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BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Match: A0A517VSM4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSM4_9PLAN)

HSP 1 Score: 47.8 bits (112), Expect = 6.580e-5
Identity = 24/40 (60.00%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:   49 MPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLFYATPDL 168
            M WERTLL N VGEPDAP KS  AYLS     + YA   L
Sbjct:    1 MLWERTLLNNFVGEPDAPVKSAEAYLSIFIFQMLYAMVSL 40
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74938.17710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517PUP1_9PLAN5.270e-57100.00Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A518ACD8_9PLAN5.190e-3977.27Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
A0A517RL27_9PLAN7.250e-1266.67Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A518II10_9PLAN6.300e-1156.36Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517WQ67_9PLAN3.020e-856.25Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517VSM4_9PLAN6.580e-560.00Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74938contigM-pyrifera_M_contig74938:175..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.4803784-CDS-M-pyrifera_M_contig74938:174..4921622816647.4803784-CDS-M-pyrifera_M_contig74938:174..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74938 175..492 -
1692278097.181959-CDS-M-pyrifera_M_contig74938:174..4921692278097.181959-CDS-M-pyrifera_M_contig74938:174..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74938 175..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74938.17710.1prot_M-pyrifera_M_contig74938.17710.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74938 175..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74938.17710.1

>prot_M-pyrifera_M_contig74938.17710.1 ID=prot_M-pyrifera_M_contig74938.17710.1|Name=mRNA_M-pyrifera_M_contig74938.17710.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MSWRLIGFFRFSGVVRMPWERTLLKNDVGEPDAPTKSTSAYLSNASGSLF
YATPDLPQKTRFCFEPFSAQLMLLKDYFAGLRERLQVLMSFMIISLSDSI
GTRQV*
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mRNA from alignment at M-pyrifera_M_contig74938:175..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74938.17710.1 ID=mRNA_M-pyrifera_M_contig74938.17710.1|Name=mRNA_M-pyrifera_M_contig74938.17710.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig74938:175..492- (Macrocystis pyrifera P11B4 male)
ATGAGCTGGAGGCTTATTGGCTTTTTCAGGTTCTCGGGAGTTGTAAGGAT
GCCTTGGGAGAGAACCCTCTTGAAGAATGATGTTGGCGAACCGGATGCTC
CGACTAAGAGCACGAGTGCGTATTTGAGCAATGCCAGCGGCAGTTTGTTC
TACGCGACGCCCGATCTACCTCAAAAGACTAGGTTCTGCTTTGAGCCTTT
CTCCGCGCAGTTGATGTTACTGAAGGACTATTTCGCCGGGCTCAGAGAAC
GTCTTCAGGTTTTGATGAGTTTTATGATTATTTCACTGTCTGACTCTATA
GGAACCAGACAGGTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74938:175..492-

>mRNA_M-pyrifera_M_contig74938.17710.1 ID=mRNA_M-pyrifera_M_contig74938.17710.1|Name=mRNA_M-pyrifera_M_contig74938.17710.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig74938:175..492- (Macrocystis pyrifera P11B4 male)
ATGAGCTGGAGGCTTATTGGCTTTTTCAGGTTCTCGGGAGTTGTAAGGAT
GCCTTGGGAGAGAACCCTCTTGAAGAATGATGTTGGCGAACCGGATGCTC
CGACTAAGAGCACGAGTGCGTATTTGAGCAATGCCAGCGGCAGTTTGTTC
TACGCGACGCCCGATCTACCTCAAAAGACTAGGTTCTGCTTTGAGCCTTT
CTCCGCGCAGTTGATGTTACTGAAGGACTATTTCGCCGGGCTCAGAGAAC
GTCTTCAGGTTTTGATGAGTTTTATGATTATTTCACTGTCTGACTCTATA
GGAACCAGACAGGTATGAATGAGCTGGAGGCTTATTGGCTTTTTCAGGTT
CTCGGGAGTTGTAAGGATGCCTTGGGAGAGAACCCTCTTGAAGAATGATG
TTGGCGAACCGGATGCTCCGACTAAGAGCACGAGTGCGTATTTGAGCAAT
GCCAGCGGCAGTTTGTTCTACGCGACGCCCGATCTACCTCAAAAGACTAG
GTTCTGCTTTGAGCCTTTCTCCGCGCAGTTGATGTTACTGAAGGACTATT
TCGCCGGGCTCAGAGAACGTCTTCAGGTTTTGATGAGTTTTATGATTATT
TCACTGTCTGACTCTATAGGAACCAGACAGGTATGA
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