mRNA_M-pyrifera_M_contig74931.17707.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74931.17707.1
Unique NamemRNA_M-pyrifera_M_contig74931.17707.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74931.17707.1 vs. uniprot
Match: A0A5A8DWB8_CAFRO (C2H2-type domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWB8_CAFRO)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-11
Identity = 51/140 (36.43%), Postives = 70/140 (50.00%), Query Frame = 1 
Query:   31 ALEELDRLESVISEALDRRPEHVVGVIRTDRVIARALKRHQELSGEVYDMLRDSDGLLAGEGAGVRTGEAA-------LSAFDESVSRLTSYYDSHPEVQDAASSLHVVTKELSKGGEPQGAVATEELFSGPEQLGQCLD 429
            +LE++DRLE  I +A+D RP    G ++TD  IA AL R +E S  V  M  DSDGL A E   +R G+A        L+AFD   +    Y+ +HP   + + +      +L  G            FSGPE LG+ LD
Sbjct:   23 SLEDIDRLELGIQQAIDERPTSHWGALQTDSRIAAALSRIEEKSKAVLGMYADSDGLRAEEIKAMRGGDAGIMDTAALLAAFDARAAESAEYFATHPGATEISEAPAAALADLPTGVS----------FSGPEVLGRFLD 152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74931.17707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DWB8_CAFRO1.640e-1136.43C2H2-type domain-containing protein n=4 Tax=Cafete... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74931contigM-pyrifera_M_contig74931:200..718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.7
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog27337.EGY18975
Preferred namesap61
KEGG rclassRC00005
KEGG koko:K10777,ko:K12827
KEGG ReactionR00381
KEGG Pathwayko03040,ko03450,map03040,map03450
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Subtilase family
EggNOG OGs1EVEQ@1028384,213HP@147550,38G63@33154,3NU4F@4751,3QKUZ@4890,COG5188@1,KOG2636@2759
EC6.5.1.1
COG Functional cat.AO
Best tax levelGlomerellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Exons2
Model size465
Cds size465
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.336118-CDS-M-pyrifera_M_contig74931:199..2801622816647.336118-CDS-M-pyrifera_M_contig74931:199..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74931 200..280 -
1692278097.1050568-CDS-M-pyrifera_M_contig74931:199..2801692278097.1050568-CDS-M-pyrifera_M_contig74931:199..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74931 200..280 -
1622816647.3487403-CDS-M-pyrifera_M_contig74931:334..7181622816647.3487403-CDS-M-pyrifera_M_contig74931:334..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74931 335..718 -
1692278097.11741-CDS-M-pyrifera_M_contig74931:334..7181692278097.11741-CDS-M-pyrifera_M_contig74931:334..718Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74931 335..718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74931.17707.1prot_M-pyrifera_M_contig74931.17707.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74931 200..718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74931.17707.1

>prot_M-pyrifera_M_contig74931.17707.1 ID=prot_M-pyrifera_M_contig74931.17707.1|Name=mRNA_M-pyrifera_M_contig74931.17707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
MAFPGDRARHALEELDRLESVISEALDRRPEHVVGVIRTDRVIARALKRH
QELSGEVYDMLRDSDGLLAGEGAGVRTGEAALSAFDESVSRLTSYYDSHP
EVQDAASSLHVVTKELSKGGEPQGAVATEELFSGPEQLGQCLDFEEHLKA
YKNLP
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mRNA from alignment at M-pyrifera_M_contig74931:200..718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74931.17707.1 ID=mRNA_M-pyrifera_M_contig74931.17707.1|Name=mRNA_M-pyrifera_M_contig74931.17707.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig74931:200..718- (Macrocystis pyrifera P11B4 male)
ATGGCATTTCCTGGAGATCGGGCTCGCCATGCATTGGAAGAGTTAGATCG
CTTGGAGAGTGTGATTTCAGAAGCATTGGATCGAAGACCAGAGCATGTAG
TGGGGGTGATTCGGACTGATCGAGTGATTGCGCGTGCTTTAAAGAGGCAT
CAGGAGCTTTCTGGGGAAGTTTATGATATGCTACGTGATTCTGATGGGTT
ACTTGCTGGGGAAGGGGCAGGGGTACGGACTGGGGAGGCTGCATTGTCTG
CATTCGACGAGTCCGTCTCTCGTTTGACAAGTTATTACGATTCCCATCCC
GAAGTACAAGATGCAGCGTCTAGTTTACATGTTGTTACAAAAGAATTAAG
CAAAGGAGGTGAACCACAAGGTGCAGTAGCTACTGTAGCAGCAGCTGCTG
GACCTGAAGGAAGCTCTTTGCTTGATTTGTTGGAGGAGGAAGAGTTATTT
TCAGGTCCAGAGCAGCTTGGACAATGTTTAGACTTTGAAGAGCATCTTAA
AGCGTACAAGAACCTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74931:200..718-

>mRNA_M-pyrifera_M_contig74931.17707.1 ID=mRNA_M-pyrifera_M_contig74931.17707.1|Name=mRNA_M-pyrifera_M_contig74931.17707.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig74931:200..718- (Macrocystis pyrifera P11B4 male)
ATGGCATTTCCTGGAGATCGGGCTCGCCATGCATTGGAAGAGTTAGATCG
CTTGGAGAGTGTGATTTCAGAAGCATTGGATCGAAGACCAGAGCATGTAG
TGGGGGTGATTCGGACTGATCGAGTGATTGCGCGTGCTTTAAAGAGGCAT
CAGGAGCTTTCTGGGGAAGTTTATGATATGCTACGTGATTCTGATGGGTT
ACTTGCTGGGGAAGGGGCAGGGGTACGGACTGGGGAGGCTGCATTGTCTG
CATTCGACGAGTCCGTCTCTCGTTTGACAAGTTATTACGATTCCCATCCC
GAAGTACAAGATGCAGCGTCTAGTTTACATGTTGTTACAAAAGAATTAAG
CAAAGGAGGTGAACCACAAGGTGCAGTAGCTACTATGGCATTTCCTGGAG
ATCGGGCTCGCCATGCATTGGAAGAGTTAGATCGCTTGGAGAGTGTGATT
TCAGAAGCATTGGATCGAAGACCAGAGCATGTAGTGGGGGTGATTCGGAC
TGATCGAGTGATTGCGCGTGCTTTAAAGAGGCATCAGGAGCTTTCTGGGG
AAGTTTATGATATGCTACGTGATTCTGATGGGTTACTTGCTGGGGAAGGG
GCAGGGGTACGGACTGGGGAGGCTGCATTGTCTGCATTCGACGAGTCCGT
CTCTCGTTTGACAAGTTATTACGATTCCCATCCCGAAGTACAAGATGCAG
CGTCTAGTTTACATGTTGTTACAAAAGAATTAAGCAAAGGAGGTGAACCA
CAAGGTGCAGTAGCTACTGAAGAGTTATTTTCAGGTCCAGAGCAGCTTGG
ACAATGTTTAGACTTTGAAGAGCATCTTAAAGCGTACAAGAACCTGCCAG
AAGAGTTATTTTCAGGTCCAGAGCAGCTTGGACAATGTTTAGACTTTGAA
GAGCATCTTAAAGCGTACAAGAACCTGCCA
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