mRNA_M-pyrifera_M_contig74929.17706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74929.17706.1
Unique NamemRNA_M-pyrifera_M_contig74929.17706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A0R0ENC3_SOYBN (BSD domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0ENC3_SOYBN)

HSP 1 Score: 57.8 bits (138), Expect = 1.220e-7
Identity = 30/96 (31.25%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 RYTDGGIAELLGPESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAI 288
            R + G + ++L P +T+  L +H + + ELLRHFW SYPIT+ +L+ K R+L++++  ++ ++E ++ +    ES  R   + +++P+ ++L  A+
Sbjct:  282 RSSQGSVLDIL-PNTTKETLLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIKVSA---ESDLRHHVSLVVHPMQQALNAAL 373          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: I1NHW6_SOYBN (Uncharacterized protein n=13 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1NHW6_SOYBN)

HSP 1 Score: 57.8 bits (138), Expect = 1.270e-7
Identity = 30/96 (31.25%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 RYTDGGIAELLGPESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAI 288
            R + G + ++L P +T+  L +H + + ELLRHFW SYPIT+ +L+ K R+L++++  ++ ++E ++ +    ES  R   + +++P+ ++L  A+
Sbjct:  475 RSSQGSVLDIL-PNTTKETLLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIKVSA---ESDLRHHVSLVVHPMQQALNAAL 566          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A444ZBT0_ARAHY (Uncharacterized protein n=4 Tax=Arachis TaxID=3817 RepID=A0A444ZBT0_ARAHY)

HSP 1 Score: 56.6 bits (135), Expect = 3.240e-7
Identity = 30/96 (31.25%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 RYTDGGIAELLGPESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAI 288
            +++   I ++L P ST+ +L +H + + ELLRHFW SYPIT+ +L  K R+L+ A+  ++ ++E ++ + +   S  R   + +++P+ ++L  A+
Sbjct:  473 KHSQDSILDIL-PTSTKEKLLDHWVCSQELLRHFWSSYPITTQNLANKTRRLKDAISQVYSKLEEIKVSAK---SDLRHQVSLIVHPMQQALDAAL 564          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A5C7IGA5_9ROSI (BSD domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IGA5_9ROSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.440e-7
Identity = 32/84 (38.10%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   37 PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAI 288
            P  T+ +L  H     ELL+HFW SYPIT+  L AKV +L+ A+  ++ ++E ++A+LR   S  R   + L+ P+ ++L  AI
Sbjct:  495 PTETKEKLLQHWTCIQELLKHFWSSYPITTPYLYAKVSRLKDAMSNIYRQLEEMKASLR---SDLRHQVSLLVRPMQQALDAAI 575          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A2R6QT45_ACTCC (RNA polymerase II transcription factor B subunit 1-1 like n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QT45_ACTCC)

HSP 1 Score: 56.2 bits (134), Expect = 4.440e-7
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   37 PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAIA 291
            P  T+  L +H     ELL+HFW SYPIT++ L  KVRKL  A+  ++ +++ ++ ++   +S  R   + L+ P+L++L+ A A
Sbjct:  499 PSITKEELLHHWTSIQELLKHFWSSYPITTSYLYVKVRKLRDAMSQIYSKLQEIKESV---QSDFRHQVSLLVQPMLQALEAAFA 580          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: C5YGW1_SORBI (Uncharacterized protein n=8 Tax=Andropogoneae TaxID=147429 RepID=C5YGW1_SORBI)

HSP 1 Score: 55.5 bits (132), Expect = 8.290e-7
Identity = 31/88 (35.23%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   28 LLG--PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQA 285
            LLG  P+ T+  L +H     ELLRHFW SYPITSA L  KV+++++A+  ++ +++L++ +    +   R   ++L+ P+ ++L  A
Sbjct:  495 LLGQLPQHTRDELMDHWTAIQELLRHFWSSYPITSAVLYNKVQRVKEAMTQIYQKLQLIKESA---QPDVRHEISRLVKPMTQALDAA 579          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A834GZ54_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GZ54_RHOSS)

HSP 1 Score: 55.5 bits (132), Expect = 8.290e-7
Identity = 29/85 (34.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   37 PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAIA 291
            P+ T+  L +H     ELL+HFW SYPIT++ L  KVR+L+ A+  ++ +++ ++ ++   +S  R   + L+ P+L++L  A A
Sbjct:  501 PKITKEELLHHWTSIEELLKHFWSSYPITTSYLYVKVRRLKDAMSQIYPKLQEIKESV---QSDCRHQVSLLVQPMLQALDAAFA 582          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A3S3P278_9MAGN (Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3P278_9MAGN)

HSP 1 Score: 55.5 bits (132), Expect = 8.290e-7
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   37 PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAIA 291
            P  T+  L +H     ELLRHFW SYP+T++ L  KV +L+ AL  ++ +++ ++ ++   +S +R   + L+ P+L++L  A A
Sbjct:  502 PNRTKEELLHHWTSIQELLRHFWSSYPVTTSYLYTKVGRLKDALTQIYPKLQEIKESM---QSDSRHQVSLLVQPMLQALDAAFA 583          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A5B8MTW4_9CHLO (Subunit 1 of transcription initiation factor TFIIH n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTW4_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 8.300e-7
Identity = 28/82 (34.15%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   34 GPESTQLRLHNHLLKA----NELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLL 267
            GPE +   +   + +A    NELLRHFW S+P++S   + KV+++ QAL+  ++++E +++NL   +SG  + A  L+  +L
Sbjct:  514 GPEGSDQEVFQQVRRASIAVNELLRHFWASFPLSSEHRIEKVKRINQALVAQYEKIEKMRSNL---DSGTTQFARPLIGQVL 592          
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Match: A0A1J7IE40_LUPAN (Uncharacterized protein n=5 Tax=Lupinus TaxID=3869 RepID=A0A1J7IE40_LUPAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.130e-6
Identity = 26/84 (30.95%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   37 PESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVRKLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAI 288
            P +T+ +L +H + + ELLRHFW SYPIT+ +L +K ++L+ A+  ++ ++E ++ +    +S  R   + +++P+ ++L  A+
Sbjct:  485 PNTTKEKLLDHWVSSQELLRHFWSSYPITTQNLASKTKRLKDAMSQVYSKLEEIKVSA---QSDLRHQISLVVHPMQQALDAAV 565          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74929.17706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R0ENC3_SOYBN1.220e-731.25BSD domain-containing protein n=1 Tax=Glycine max ... [more]
I1NHW6_SOYBN1.270e-731.25Uncharacterized protein n=13 Tax=Glycine subgen. S... [more]
A0A444ZBT0_ARAHY3.240e-731.25Uncharacterized protein n=4 Tax=Arachis TaxID=3817... [more]
A0A5C7IGA5_9ROSI4.440e-738.10BSD domain-containing protein n=1 Tax=Acer yangbie... [more]
A0A2R6QT45_ACTCC4.440e-735.29RNA polymerase II transcription factor B subunit 1... [more]
C5YGW1_SORBI8.290e-735.23Uncharacterized protein n=8 Tax=Andropogoneae TaxI... [more]
A0A834GZ54_RHOSS8.290e-734.12Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A3S3P278_9MAGN8.290e-734.12Putative RNA polymerase II transcription factor B ... [more]
A0A5B8MTW4_9CHLO8.300e-734.15Subunit 1 of transcription initiation factor TFIIH... [more]
A0A1J7IE40_LUPAN1.130e-630.95Uncharacterized protein n=5 Tax=Lupinus TaxID=3869... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74929contigM-pyrifera_M_contig74929:553..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.2985039-CDS-M-pyrifera_M_contig74929:552..8431622816647.2985039-CDS-M-pyrifera_M_contig74929:552..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74929 553..843 +
1692278097.0896132-CDS-M-pyrifera_M_contig74929:552..8431692278097.0896132-CDS-M-pyrifera_M_contig74929:552..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74929 553..843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74929.17706.1prot_M-pyrifera_M_contig74929.17706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74929 553..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74929.17706.1

>prot_M-pyrifera_M_contig74929.17706.1 ID=prot_M-pyrifera_M_contig74929.17706.1|Name=mRNA_M-pyrifera_M_contig74929.17706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
RYTDGGIAELLGPESTQLRLHNHLLKANELLRHFWRSYPITSASLLAKVR
KLEQALLTMFDEVELLQANLRRQESGAREGAAQLLNPLLRSLQQAIA
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mRNA from alignment at M-pyrifera_M_contig74929:553..843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74929.17706.1 ID=mRNA_M-pyrifera_M_contig74929.17706.1|Name=mRNA_M-pyrifera_M_contig74929.17706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig74929:553..843+ (Macrocystis pyrifera P11B4 male)
AGATATACTGACGGAGGTATAGCGGAGCTTCTCGGGCCAGAGTCGACGCA ACTGCGGCTGCACAACCACCTCCTCAAAGCCAACGAACTGCTGCGCCACT TTTGGCGCTCGTACCCCATCACGAGCGCATCTCTGCTCGCCAAGGTGAGG AAGCTGGAGCAAGCTCTGTTGACCATGTTCGATGAGGTCGAGCTCCTCCA AGCCAACTTGCGTCGCCAAGAGTCAGGCGCACGCGAAGGGGCGGCACAGC TGCTGAACCCCCTCCTACGCTCCCTTCAGCAAGCCATTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74929:553..843+

>mRNA_M-pyrifera_M_contig74929.17706.1 ID=mRNA_M-pyrifera_M_contig74929.17706.1|Name=mRNA_M-pyrifera_M_contig74929.17706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig74929:553..843+ (Macrocystis pyrifera P11B4 male)
AGATATACTGACGGAGGTATAGCGGAGCTTCTCGGGCCAGAGTCGACGCA
ACTGCGGCTGCACAACCACCTCCTCAAAGCCAACGAACTGCTGCGCCACT
TTTGGCGCTCGTACCCCATCACGAGCGCATCTCTGCTCGCCAAGGTGAGG
AAGCTGGAGCAAGCTCTGTTGACCATGTTCGATGAGGTCGAGCTCCTCCA
AGCCAACTTGCGTCGCCAAGAGTCAGGCGCACGCGAAGGGGCGGCACAGC
TGCTGAACCCCCTCCTACGCTCCCTTCAGCAAGCCATTGCCAGATATACT
GACGGAGGTATAGCGGAGCTTCTCGGGCCAGAGTCGACGCAACTGCGGCT
GCACAACCACCTCCTCAAAGCCAACGAACTGCTGCGCCACTTTTGGCGCT
CGTACCCCATCACGAGCGCATCTCTGCTCGCCAAGGTGAGGAAGCTGGAG
CAAGCTCTGTTGACCATGTTCGATGAGGTCGAGCTCCTCCAAGCCAACTT
GCGTCGCCAAGAGTCAGGCGCACGCGAAGGGGCGGCACAGCTGCTGAACC
CCCTCCTACGCTCCCTTCAGCAAGCCATTGCC
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