mRNA_M-pyrifera_M_contig74924.17705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74924.17705.1
Unique NamemRNA_M-pyrifera_M_contig74924.17705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74924.17705.1 vs. uniprot
Match: A0A5C5VA43_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas corsicana TaxID=1938618 RepID=A0A5C5VA43_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 4.980e-14
Identity = 72/263 (27.38%), Postives = 134/263 (50.95%), Query Frame = 1 
Query:    4 QIIAQGRLLPAKGLISLGGTPGDRV--VDLKVKPGQPIAAEDELAILLSYELHGMKVAGLEEQKKDAQDKLKIEQKTAGFQLQKANLAVEHAKNQQELLQGAQQQIGLLEKQRMLELNKLQKIRQLRDENPRLITESQVEAQQLLTDKLAIDIESANLELRNNTKAAAAAVKSAEQDQKAAQEKVEMVDASHLIAALDKQIEAARLQQEQSKIVSPIAG-----------------------TVMKIFVQQGDTIARTPVLQV 717
            QI A G L PA G+IS+ GTPGD++  +D KV   QP  A+  L +L SY+    ++  L  ++  A +K +++   A  QL+ A   V+ A+ +Q   +   +Q+  L++   +  ++L  I +LR+ +P L+T+ QV  Q+    +   +++ A   +    +AA AA+++A  +   A+  V+ +  +  + A+DK+I  A+    QS + +P A                        TV+K+F + G+ +++ PV+ V
Sbjct:   37 QIFALGTLQPAGGVISISGTPGDKLKALDPKVVENQPAPADGLLGVLASYDARHAQLEALRTRRTLADEKQRVDLLLAEAQLRGARAKVKEAEAKQXEARLQSEQVKHLDEAAAIARDELDSIVELRESDPELVTDHQVRKQRNRVARAESEVKLAQQRIAPMAEAAEAALQAAHSNVXXAEVSVDSLRKNGALEAIDKEIAVAQQALAQSVLWAPGADQSSVELDATPTDNQDAVDQPRRYTVLKVFTKPGELVSQLPVMNV 299
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BLAST of mRNA_M-pyrifera_M_contig74924.17705.1 vs. uniprot
Match: A0A5C5XUP1_9BACT (Uncharacterized protein n=1 Tax=Posidoniimonas polymericola TaxID=2528002 RepID=A0A5C5XUP1_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-7
Identity = 64/260 (24.62%), Postives = 121/260 (46.54%), Query Frame = 1 
Query:    7 IIAQGRLLPAKGLISLGGTPGDRV--VDLKVKPGQPIAAEDELAILLSYELHGMKVAGLEEQKKDAQDKLKIEQKTAGFQLQKANLAVEHAKNQQELLQGAQQQIGLLEKQRMLELNKLQKIRQLRDENPRLITESQVEAQQLLTDKLAIDIESANLELRNNTKAAAAAVKSAEQDQKAAQEKVEMVDASHLIAALDKQIEAARLQQEQSKIVSPIAGT-----------------------VMKIFVQQGDTIARTPVL 711
            + A G L P  G+IS+ GTPGD++   D +V   +   A+  L +L SY+    ++  L  +++ A++K +++   A  QL+ A   V+ A+  Q   +    Q+  LE+   +  ++L+ I  LR+ +P L+TE QV  Q+    +   +++ A   +   ++AA AA+                +  +  + A+D +I  A+    QS + +P A T                       V+KIF + G+ +++ PV+
Sbjct:   41 VYALGTLQPTSGVISITGTPGDKLKSFDPQVAENELTPADGRLGVLASYDARHAQLEALRTRRRLAEEKQQVDLLLAQAQLRGARAKVKQAEANQAXXRLQSAQVKNLEEAAAIARDELESIEDLRESDPELVTEHQVRKQRNRVARAESEVQLAAQRIAPMSEAAEAALXXXXXXXXXXXXXXXSLKKNGTLDAIDTEIAVAQQSLAQSVLWAPGADTSHAEGDAPTAAPDEPQPEPQRYTVLKIFTKPGEMVSQLPVI 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74924.17705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C5VA43_9BACT4.980e-1427.38Uncharacterized protein n=1 Tax=Posidoniimonas cor... [more]
A0A5C5XUP1_9BACT2.030e-724.62Uncharacterized protein n=1 Tax=Posidoniimonas pol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74924contigM-pyrifera_M_contig74924:349..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.2673311-CDS-M-pyrifera_M_contig74924:348..10651622816647.2673311-CDS-M-pyrifera_M_contig74924:348..1065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74924 349..1065 +
1692278097.0758085-CDS-M-pyrifera_M_contig74924:348..10651692278097.0758085-CDS-M-pyrifera_M_contig74924:348..1065Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74924 349..1065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74924.17705.1prot_M-pyrifera_M_contig74924.17705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74924 349..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74924.17705.1

>prot_M-pyrifera_M_contig74924.17705.1 ID=prot_M-pyrifera_M_contig74924.17705.1|Name=mRNA_M-pyrifera_M_contig74924.17705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
TQIIAQGRLLPAKGLISLGGTPGDRVVDLKVKPGQPIAAEDELAILLSYE
LHGMKVAGLEEQKKDAQDKLKIEQKTAGFQLQKANLAVEHAKNQQELLQG
AQQQIGLLEKQRMLELNKLQKIRQLRDENPRLITESQVEAQQLLTDKLAI
DIESANLELRNNTKAAAAAVKSAEQDQKAAQEKVEMVDASHLIAALDKQI
EAARLQQEQSKIVSPIAGTVMKIFVQQGDTIARTPVLQV
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mRNA from alignment at M-pyrifera_M_contig74924:349..1065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74924.17705.1 ID=mRNA_M-pyrifera_M_contig74924.17705.1|Name=mRNA_M-pyrifera_M_contig74924.17705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig74924:349..1065+ (Macrocystis pyrifera P11B4 male)
ACGCAAATCATTGCGCAGGGTCGACTGCTGCCAGCGAAAGGTTTGATATC
TCTGGGCGGAACCCCCGGCGACCGCGTGGTTGATCTCAAAGTGAAACCCG
GCCAACCAATCGCCGCCGAAGACGAACTCGCAATATTGCTCAGTTACGAA
CTGCACGGCATGAAAGTCGCCGGCCTCGAAGAGCAAAAGAAGGATGCCCA
AGACAAACTGAAAATTGAACAAAAAACGGCTGGCTTTCAATTGCAAAAGG
CGAACCTTGCAGTTGAACACGCCAAAAACCAGCAAGAACTGCTTCAAGGC
GCCCAGCAGCAAATTGGCCTGCTCGAAAAGCAGCGAATGTTAGAACTCAA
CAAACTGCAAAAGATTCGCCAACTGCGCGACGAAAACCCACGCCTCATAA
CTGAATCGCAGGTCGAAGCCCAACAACTGTTAACTGACAAGTTGGCGATC
GATATCGAATCGGCGAATCTTGAATTACGAAATAATACCAAAGCGGCTGC
CGCGGCCGTAAAATCAGCTGAACAAGACCAAAAGGCTGCGCAGGAGAAAG
TCGAAATGGTCGACGCGAGCCATTTAATCGCGGCGCTCGACAAACAAATC
GAAGCGGCGAGATTGCAACAAGAGCAGTCGAAGATCGTATCGCCGATCGC
CGGCACGGTCATGAAAATTTTCGTTCAACAAGGCGACACTATTGCGCGAA
CGCCTGTGCTGCAAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74924:349..1065+

>mRNA_M-pyrifera_M_contig74924.17705.1 ID=mRNA_M-pyrifera_M_contig74924.17705.1|Name=mRNA_M-pyrifera_M_contig74924.17705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig74924:349..1065+ (Macrocystis pyrifera P11B4 male)
ACGCAAATCATTGCGCAGGGTCGACTGCTGCCAGCGAAAGGTTTGATATC
TCTGGGCGGAACCCCCGGCGACCGCGTGGTTGATCTCAAAGTGAAACCCG
GCCAACCAATCGCCGCCGAAGACGAACTCGCAATATTGCTCAGTTACGAA
CTGCACGGCATGAAAGTCGCCGGCCTCGAAGAGCAAAAGAAGGATGCCCA
AGACAAACTGAAAATTGAACAAAAAACGGCTGGCTTTCAATTGCAAAAGG
CGAACCTTGCAGTTGAACACGCCAAAAACCAGCAAGAACTGCTTCAAGGC
GCCCAGCAGCAAATTGGCCTGCTCGAAAAGCAGCGAATGTTAGAACTCAA
CAAACTGCAAAAGATTCGCCAACTGCGCGACGAAAACCCACGCCTCATAA
CTGAATCGCAGGTCGAAGCCCAACAACTGTTAACTGACAAGTTGGCGATC
GATATCGAATCGGCGAATCTTGAATTACGAAATAATACCAAAGCGGCTGC
CGCGGCCGTAAAATCAGCTGAACAAGACCAAAAGGCTGCGCAGGAGAAAG
TCGAAATGGTCGACGCGAGCCATTTAATCGCGGCGCTCGACAAACAAATC
GAAGCGGCGAGATTGCAACAAGAGCAGTCGAAGATCGTATCGCCGATCGC
CGGCACGGTCATGAAAATTTTCGTTCAACAAGGCGACACTATTGCGCGAA
CGCCTGTGCTGCAAGTCACGCAAATCATTGCGCAGGGTCGACTGCTGCCA
GCGAAAGGTTTGATATCTCTGGGCGGAACCCCCGGCGACCGCGTGGTTGA
TCTCAAAGTGAAACCCGGCCAACCAATCGCCGCCGAAGACGAACTCGCAA
TATTGCTCAGTTACGAACTGCACGGCATGAAAGTCGCCGGCCTCGAAGAG
CAAAAGAAGGATGCCCAAGACAAACTGAAAATTGAACAAAAAACGGCTGG
CTTTCAATTGCAAAAGGCGAACCTTGCAGTTGAACACGCCAAAAACCAGC
AAGAACTGCTTCAAGGCGCCCAGCAGCAAATTGGCCTGCTCGAAAAGCAG
CGAATGTTAGAACTCAACAAACTGCAAAAGATTCGCCAACTGCGCGACGA
AAACCCACGCCTCATAACTGAATCGCAGGTCGAAGCCCAACAACTGTTAA
CTGACAAGTTGGCGATCGATATCGAATCGGCGAATCTTGAATTACGAAAT
AATACCAAAGCGGCTGCCGCGGCCGTAAAATCAGCTGAACAAGACCAAAA
GGCTGCGCAGGAGAAAGTCGAAATGGTCGACGCGAGCCATTTAATCGCGG
CGCTCGACAAACAAATCGAAGCGGCGAGATTGCAACAAGAGCAGTCGAAG
ATCGTATCGCCGATCGCCGGCACGGTCATGAAAATTTTCGTTCAACAAGG
CGACACTATTGCGCGAACGCCTGTGCTGCAAGTC
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