mRNA_M-pyrifera_M_contig749.17704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig749.17704.1
Unique NamemRNA_M-pyrifera_M_contig749.17704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: D7FX15_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX15_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 1.160e-63
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEVQLG 312
            EYFGQYGEIAKLVINHH+GV  DDPRYGSASAYITF+RQEDAWAA+CSVDGFRLMGRTIRASFGT+KYCNSFLRNLPCNNPDCLYLH LGDE DRFTKDEVQLG
Sbjct:   99 EYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKDEVQLG 202
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A6H5JE06_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE06_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.100e-60
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTK---DEVQLG 312
            EYFGQYGEIAKLVINHH+GV  DDPRYGSASAYITF+RQEDAWAA+CSVDGFRLMGRTIRASFGT+KYCNSFLRNLPCNNPDCLYLH LGDE DRFTK   DEVQLG
Sbjct:   98 EYFGQYGEIAKLVINHHEGVPQDDPRYGSASAYITFRRQEDAWAAVCSVDGFRLMGRTIRASFGTTKYCNSFLRNLPCNNPDCLYLHELGDEEDRFTKAGSDEVQLG 204
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A836CMF8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.090e-52
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    4 YFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEV 303
            YFGQYG IAK+V+NHH GV+ DDPR+GSASAY+TF  +EDAW+AI +VDGF L GR +RASFGT+KYCNSFLR L CNN DCLYLH LGDE DRFTK+E+
Sbjct:   28 YFGQYGRIAKIVVNHHHGVNADDPRHGSASAYVTFAHKEDAWSAIKAVDGFWLEGRHVRASFGTTKYCNSFLRGLACNNGDCLYLHELGDERDRFTKEEI 127
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 154 bits (388), Expect = 4.440e-42
Identity = 67/104 (64.42%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEVQLG 312
            E+FGQYG I K+V+NH+ G    DPR+GSASAYITF  ++DA +AI +VDG++  GR IRASFGT+KYCN+FLRNLPC NP+CLYLH LGD  DR+T++E+Q G
Sbjct:  141 EFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSEDRYTREEIQTG 244
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.350e-37
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSAS----AYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEVQLG 312
            EYFGQ+G+I K+V+N +    + DPR  SAS    AYITF  +EDA A I +VDGF + GR +RASFGT+KYCNSFLRNL C NPDCLYLH LG+E D FTK+++Q G
Sbjct:  181 EYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDSFTKEQIQSG 288
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: F0ZTE2_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZTE2_DICPU)

HSP 1 Score: 132 bits (333), Expect = 1.070e-36
Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEV 303
            EYFGQYG+I K+VIN +   + + P     SAYIT+QR+EDA  AI ++DG  + GR +RASFGT+KYC+ FLR LPCNNPDC+YLH LG E D ++K+++
Sbjct:  124 EYFGQYGKILKIVINKNNIYNVNSPHGACVSAYITYQRKEDALVAIQTIDGATIEGRVLRASFGTTKYCSYFLRKLPCNNPDCMYLHELGQEDDSYSKEDI 224
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.100e-36
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDE 276
            E+FGQ+G+I K+V N +QG+   D R+GSASAYI+F  +EDA A I SVDGF L GRT++A+FGT+KYCNSFLR+LPCNN +C+YLH LGDE
Sbjct:  121 EWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDE 212
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A482RNX1_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNX1_9ARCH)

HSP 1 Score: 130 bits (328), Expect = 2.490e-36
Identity = 55/104 (52.88%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEVQLG 312
            EYFGQYG+++K++++ +       P + + SAY+TF  +EDA A I +++GF + G  +RASFGT+KYCN+++R+LPC+NPDC+YLH LG+E DRFTK+E+QLG
Sbjct:   71 EYFGQYGKVSKVIVHRNAA-----PPHHTVSAYVTFCHKEDARACIQALEGFVVEGHVLRASFGTTKYCNNYIRHLPCSNPDCVYLHELGEEEDRFTKEEIQLG 169
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS)

HSP 1 Score: 130 bits (326), Expect = 8.640e-36
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDE 300
            EYFGQYG+IAK+VIN +   +  DPR  SASAY+TF  +ED  A I ++DGF   GR IRAS+GTSKYC++F++++ CNNPDC YLH +GD+ D FTK E
Sbjct:  117 EYFGQYGKIAKIVINRNH--NPGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQEDTFTKQE 214
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BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Match: A0A7S2R154_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R154_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.790e-35
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 EYFGQYGEIAKLVIN-HHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVDGFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDEVQLG 312
            EYFGQ G++AK+VIN +H G    DPR  SASAY+TF  +ED  A I ++DGF L GR IRAS+GTSKYC++F++N+ CNNPDC YLH +G++ D FTK E+Q G
Sbjct:   75 EYFGQNGKVAKIVINRNHNG--NGDPRRASASAYVTFVHKEDTLACILALDGFYLEGRNIRASYGTSKYCSAFIKNVRCNNPDCTYLHGMGEDEDTFTKQEIQAG 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig749.17704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX15_ECTSI1.160e-6392.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JE06_9PHAE1.100e-6089.72RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CMF8_9STRA2.090e-5274.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4D5P1_HETAK4.440e-4264.42Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2GN38_9STRA8.350e-3761.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0ZTE2_DICPU1.070e-3656.44Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A835YKN6_9STRA1.100e-3665.22RING/Ubox like zinc-binding domain-containing prot... [more]
A0A482RNX1_9ARCH2.490e-3652.88RRM domain-containing protein (Fragment) n=1 Tax=a... [more]
B8BXU6_THAPS8.640e-3659.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2R154_9STRA4.790e-3559.05Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig749contigM-pyrifera_M_contig749:32117..32428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.3e-52
Seed eggNOG ortholog2880.D7FX15
KEGG koko:K10643
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5175@1,KOG2068@2759
EC2.3.2.27
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.2252264-CDS-M-pyrifera_M_contig749:32116..324281622816647.2252264-CDS-M-pyrifera_M_contig749:32116..32428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig749 32117..32428 -
1692278097.0613317-CDS-M-pyrifera_M_contig749:32116..324281692278097.0613317-CDS-M-pyrifera_M_contig749:32116..32428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig749 32117..32428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig749.17704.1prot_M-pyrifera_M_contig749.17704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig749 32117..32428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig749.17704.1

>prot_M-pyrifera_M_contig749.17704.1 ID=prot_M-pyrifera_M_contig749.17704.1|Name=mRNA_M-pyrifera_M_contig749.17704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
EYFGQYGEIAKLVINHHQGVSTDDPRYGSASAYITFQRQEDAWAAICSVD
GFRLMGRTIRASFGTSKYCNSFLRNLPCNNPDCLYLHALGDEGDRFTKDE
VQLG
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mRNA from alignment at M-pyrifera_M_contig749:32117..32428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig749.17704.1 ID=mRNA_M-pyrifera_M_contig749.17704.1|Name=mRNA_M-pyrifera_M_contig749.17704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig749:32117..32428- (Macrocystis pyrifera P11B4 male)
GAGTACTTCGGTCAGTACGGCGAGATCGCAAAGCTCGTGATCAACCACCA
CCAGGGAGTTTCCACCGATGACCCGCGATATGGCAGCGCCAGCGCCTACA
TCACCTTCCAGCGTCAAGAGGACGCCTGGGCGGCCATCTGCTCGGTCGAC
GGGTTCCGCCTCATGGGCCGTACCATCCGCGCGAGCTTCGGCACCAGCAA
GTACTGCAACAGCTTCCTGCGAAACCTTCCCTGTAACAACCCGGATTGCT
TGTACCTTCACGCCCTTGGGGACGAGGGGGACCGCTTCACGAAGGACGAG
GTGCAGCTGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig749:32117..32428-

>mRNA_M-pyrifera_M_contig749.17704.1 ID=mRNA_M-pyrifera_M_contig749.17704.1|Name=mRNA_M-pyrifera_M_contig749.17704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig749:32117..32428- (Macrocystis pyrifera P11B4 male)
GAGTACTTCGGTCAGTACGGCGAGATCGCAAAGCTCGTGATCAACCACCA
CCAGGGAGTTTCCACCGATGACCCGCGATATGGCAGCGCCAGCGCCTACA
TCACCTTCCAGCGTCAAGAGGACGCCTGGGCGGCCATCTGCTCGGTCGAC
GGGTTCCGCCTCATGGGCCGTACCATCCGCGCGAGCTTCGGCACCAGCAA
GTACTGCAACAGCTTCCTGCGAAACCTTCCCTGTAACAACCCGGATTGCT
TGTACCTTCACGCCCTTGGGGACGAGGGGGACCGCTTCACGAAGGACGAG
GTGCAGCTGGGCGAGTACTTCGGTCAGTACGGCGAGATCGCAAAGCTCGT
GATCAACCACCACCAGGGAGTTTCCACCGATGACCCGCGATATGGCAGCG
CCAGCGCCTACATCACCTTCCAGCGTCAAGAGGACGCCTGGGCGGCCATC
TGCTCGGTCGACGGGTTCCGCCTCATGGGCCGTACCATCCGCGCGAGCTT
CGGCACCAGCAAGTACTGCAACAGCTTCCTGCGAAACCTTCCCTGTAACA
ACCCGGATTGCTTGTACCTTCACGCCCTTGGGGACGAGGGGGACCGCTTC
ACGAAGGACGAGGTGCAGCTGGGC
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