prot_M-pyrifera_M_contig74848.17694.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74848.17694.1
Unique Nameprot_M-pyrifera_M_contig74848.17694.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length88
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig74848.17694.1 vs. uniprot
Match: A0A5J4WPC7_9EUKA (Putative Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WPC7_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 9.320e-6
Identity = 26/84 (30.95%), Postives = 36/84 (42.86%), Query Frame = 0 
Query:    1 VCKFWLQGKCRKDTKCEFLHLYELPLMPECRNGRS---CGTRDCPFRHTGVDASLEPPALCLRFLDGYCPEGDRCGYLHVQLPP 81
            VCK W             LHL ++ LMPEC+   S   C   DC FRH   +  +     C+ +  G+C  G +C   H +  P
Sbjct:   54 VCKHWFXXXXXXXXXXXXLHLLDMQLMPECQYFASNGICTKEDCAFRHVTPEDKIHE---CVWYNRGFCSHGPKCKSKHARKQP 134
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74848.17694.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5J4WPC7_9EUKA9.320e-630.95Putative Cleavage and polyadenylation specificity ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 52..78
e-value: 0.0026
score: 27.0
coord: 1..22
e-value: 2.5
score: 13.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 1..23
score: 12.69
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 52..79
score: 12.033
NoneNo IPR availableGENE3D4.10.1000.10coord: 1..51
e-value: 7.4E-13
score: 50.2
NoneNo IPR availablePFAMPF18345zf_CCCH_4coord: 2..20
e-value: 3.9E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR23102:SF24CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 4-RELATEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR23102ZINC FINGER CLIPPER -RELATEDcoord: 1..78
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 1..20
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 56..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74848contigM-pyrifera_M_contig74848:747..1010 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74848.17694.1mRNA_M-pyrifera_M_contig74848.17694.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74848 747..1010 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74848.17694.1 ID=prot_M-pyrifera_M_contig74848.17694.1|Name=mRNA_M-pyrifera_M_contig74848.17694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
VCKFWLQGKCRKDTKCEFLHLYELPLMPECRNGRSCGTRDCPFRHTGVDA
SLEPPALCLRFLDGYCPEGDRCGYLHVQLPPHERPLVS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf