Homology
BLAST of mRNA_M-pyrifera_M_contig74832.17689.1 vs. uniprot
Match: A0A6H5JKE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.000e-26 Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 Query: 1 EVTVTFPEMPEDYPKKWLTFCAEGSLDAIEAFLGSAGKPLVALMSLRGALQVGYPQFVEMIAS 189
EV+V+FPEMPE YPK W TFC EG + +IEAFLGS GKPLVAL+SLRGALQVGYP FV+MI++
Sbjct: 149 EVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMIST 211
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | no signal peptide or anchor |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-17_000950.1 |
Exons | 1 |
Model size | 192 |
Cds size | 168 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816646.5558228-UTR-M-pyrifera_M_contig74832:190..214 | 1622816646.5558228-UTR-M-pyrifera_M_contig74832:190..214 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig74832 191..214 + |
1692278096.7102234-UTR-M-pyrifera_M_contig74832:190..214 | 1692278096.7102234-UTR-M-pyrifera_M_contig74832:190..214 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig74832 191..214 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816646.5680625-CDS-M-pyrifera_M_contig74832:214..382 | 1622816646.5680625-CDS-M-pyrifera_M_contig74832:214..382 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74832 215..382 + |
1692278096.7274663-CDS-M-pyrifera_M_contig74832:214..382 | 1692278096.7274663-CDS-M-pyrifera_M_contig74832:214..382 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74832 215..382 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74832.17689.1 >prot_M-pyrifera_M_contig74832.17689.1 ID=prot_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MPEDYPKKWLTFCAEGSLDAIEAFLGSAGKPLVALMSLRGALQVGYPQFV EMIAS* back to topmRNA from alignment at M-pyrifera_M_contig74832:191..382+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig74832.17689.1 ID=mRNA_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig74832:191..382+ (Macrocystis pyrifera P11B4 male) GAGGTGACGGTGACCTTCCCGGAAATGCCTGAGGATTACCCGAAGAAGTG
GCTGACGTTCTGCGCCGAGGGCTCGTTAGACGCGATCGAGGCCTTCTTGG
GCAGCGCCGGCAAGCCACTGGTGGCGCTCATGTCTTTGAGGGGTGCCTTG
CAAGTCGGGTACCCTCAGTTCGTTGAGATGATAGCTTCGTAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig74832:191..382+ >mRNA_M-pyrifera_M_contig74832.17689.1 ID=mRNA_M-pyrifera_M_contig74832.17689.1|Name=mRNA_M-pyrifera_M_contig74832.17689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig74832:191..382+ (Macrocystis pyrifera P11B4 male) ATGCCTGAGGATTACCCGAAGAAGTGGCTGACGTTCTGCGCCGAGGGCTC GTTAGACGCGATCGAGGCCTTCTTGGGCAGCGCCGGCAAGCCACTGGTGG CGCTCATGTCTTTGAGGGGTGCCTTGCAAGTCGGGTACCCTCAGTTCGTT GAGATGATAGCTTCGTAGATGCCTGAGGATTACCCGAAGAAGTGGCTGAC GTTCTGCGCCGAGGGCTCGTTAGACGCGATCGAGGCCTTCTTGGGCAGCG CCGGCAAGCCACTGGTGGCGCTCATGTCTTTGAGGGGTGCCTTGCAAGTC GGGTACCCTCAGTTCGTTGAGATGATAGCTTCGTAG back to top
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