mRNA_M-pyrifera_M_contig7474.17676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7474.17676.1
Unique NamemRNA_M-pyrifera_M_contig7474.17676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.000e-45
Identity = 86/126 (68.25%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:    1 PHFRACIVCQRLGG----------APPVTPPAEPPLP--PLLLCSTCPASFHLSCLRPRLRVMPTGGG------WSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMRTLRYNAIG 324
            PHFRACIVCQR G           APP  P A  P    PLLLCSTCPA+FHLSCLRPRLR MP G G      WSCAYC A GR VG D DGACGAVRLMESLRQGM G++RVNAMRTLRYNA+G
Sbjct:  393 PHFRACIVCQRPGTDSNGAAVDGPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTGEGGSAKWSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRVNAMRTLRYNALG 518
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BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.750e-41
Identity = 84/126 (66.67%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:    1 PHFRACIVCQRLG---GAPPVTPPAEPPL---------PPLLLCSTCPASFHLSCLRPRLRVMPTG---GG---WSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMRTLRYNAIG 324
            PHFRACIVCQR G       V  PA P L          PLLLCSTCPA+FHLSCLRPRLR MP G   GG   WSCAYC A GR +G D DGACGAVRLMESLRQGM G++RVNA+RTLRYNA+G
Sbjct: 1657 PHFRACIVCQRPGTDSNGVAVDEPAPPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTSEGGSAKWSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRVNALRTLRYNALG 1782
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7474.17676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS03_ECTSI8.000e-4568.25PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KX53_9PHAE2.750e-4166.67PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7474contigM-pyrifera_M_contig7474:346..2193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPHD-type zinc finger protein
Ec32 orthologEc-08_001580.1
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7474.17676.1prot_M-pyrifera_M_contig7474.17676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7474 346..2193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.8040223-CDS-M-pyrifera_M_contig7474:345..4121622816645.8040223-CDS-M-pyrifera_M_contig7474:345..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 346..412 +
1692278096.3047013-CDS-M-pyrifera_M_contig7474:345..4121692278096.3047013-CDS-M-pyrifera_M_contig7474:345..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 346..412 +
1622816645.819565-CDS-M-pyrifera_M_contig7474:580..7981622816645.819565-CDS-M-pyrifera_M_contig7474:580..798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 581..798 +
1692278096.3165476-CDS-M-pyrifera_M_contig7474:580..7981692278096.3165476-CDS-M-pyrifera_M_contig7474:580..798Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 581..798 +
1622816645.8343005-CDS-M-pyrifera_M_contig7474:2151..21931622816645.8343005-CDS-M-pyrifera_M_contig7474:2151..2193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 2152..2193 +
1692278096.3269181-CDS-M-pyrifera_M_contig7474:2151..21931692278096.3269181-CDS-M-pyrifera_M_contig7474:2151..2193Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7474 2152..2193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7474.17676.1

>prot_M-pyrifera_M_contig7474.17676.1 ID=prot_M-pyrifera_M_contig7474.17676.1|Name=mRNA_M-pyrifera_M_contig7474.17676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
PHFRACIVCQRLGGAPPVTPPAEPPLPPLLLCSTCPASFHLSCLRPRLRV
MPTGGGWSCAYCFATGRAVGEDPDGACGAVRLMESLRQGMQGSIRVNAMR
TLRYNAIG*
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mRNA from alignment at M-pyrifera_M_contig7474:346..2193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7474.17676.1 ID=mRNA_M-pyrifera_M_contig7474.17676.1|Name=mRNA_M-pyrifera_M_contig7474.17676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1848bp|location=Sequence derived from alignment at M-pyrifera_M_contig7474:346..2193+ (Macrocystis pyrifera P11B4 male)
CCGCACTTCCGCGCGTGCATCGTCTGCCAGCGCTTGGGGGGCGCCCCTCC
CGTCACCCCCCCCGCTGGTGCCGCCGCCTCTACCGCTGCCGCCGTCGACA
ACACCGGGGACACCAAAACTCCACCCCCTCCCTCCAAGAAATCCTCCAGT
GGTGGTGGTAGTGGTACCGATGATCGCACGGTCAAGAAAGAGTACGGGGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGCCGCCGCTACCGC
CCCTCCTCCTGTGCAGCACCTGTCCGGCGTCTTTCCACCTCTCTTGCCTG
AGGCCGCGCCTGAGGGTGATGCCGACGGGGGGTGGGTGGAGCTGCGCCTA
CTGCTTCGCGACGGGGCGGGCGGTTGGGGAAGACCCGGACGGGGCTTGCG
GGGCGGTACGGCTGATGGAAAGCCTTCGGCAGGGGATGCAGGGATCCATT
CGGGTACGTACGTACGATTTATTTATTTATGTACCATGGTATTTATTTAT
TGAGAACGTACGATATTGATTATTGATTTTGTTTTGATAAAAACGTTTGT
TTTTGTTGTTGTACGCACTCGTGTTATTGTACTCGTGTTTATTTCGTCGT
TCCGTGCCATACGGACTCATACCCTTCCGGGTATAATATATTCATACACA
TCCATGTATACTGTGTTGTTTTTTTTTGTTTGCTTTTTTTTATAAAATTA
TATACAACTACCAGGTACCAAAAAACGATTCGTAGTCTTAATTCCCAAGT
CGTTTTCACCCCTAAAAGTCCTACTCTTTGTTACGGCAAGGGTGCGTGTT
AATGGCTCCCTTTTTTTTTGAACATCCTCACTTGCGGAACTCTCGTACCT
CAACTCAAAAACCTGGTTAAAAAAAATGTTCAAGCCTAACAACCCCATCA
CCTGCAGGTGTACAACAAACATAACACTACTGCTACTACTGTAAAACGTG
AGGGGCTCCGTCTAGACCAAAAAAACGCAAGGGCCGTGTAGAAGTTTAGC
GTCAGGACCAAGCGGCCCTTGCATTCCGGCCCAGAGTGGTTCCTCTTTTT
ACCCCTTTACCCCTTTTGCCTCTGCCCTTCATGTTACCGATACAGTCACC
TTTTTCTTCAACACCCTTTGTATTTTTGCCCTTAACCCTTTTCAGGACTG
CAGCGCCGTTTTTGGGACGAGCTACTCAGAATTTGATAGCGGTTTGCCCT
CCAAAACGGGACTGCAGTTTGCCCCGAAAGGGTCAATTGAGCCTATAATT
GCTTTATTAAGTAGTGGGACTAAACTCCCGTTTTGGCGACAACTTACCTG
GGATTAGAGTCAGCTCTATGCTTCTGTGCACCGCACTACCAGAAGGGTTG
ATTAACCCTTTTGTCCTTCTCCGCCTGCCCTCGACGCGTGCACTTTTTTT
GGCCCAAATTGTTTGTGGCCGAGGGGGCTCCTCAACTCAGGAACTACCCG
GTATCCAATGTCACCGGAAATACCGTTTGCGTTTCATATTGTTTTTGTTT
TATACCCGGACCATGTTGGGATTTTGTTCTGTTCGTTGGGCTCTCGCTTT
TTTTTGTTTTTTGTTTTTTTACACGAAACTCAGCTCTTGGGTGGAGGAGG
TGTAGGTAGAGCTCTTCAAATTAGTATGTAGGAGCCTCAAAAAAGCGCGC
GGGGCGGCGGTCGATCTCCTTCCGTGGCGTGCATCCCTTTTTTTTTCCCC
CCTTACACAGCAGTATTACCCCGCTCTTTTAACCTTTGGACGCTGCCCTT
CCCCTTCGCGTTGCTGCTGCCGCCCCCGCCGCCGCTGTTGTTGTCAACGG
GCGCAGGTAAACGCCATGCGGACGCTGCGCTACAATGCCATCGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7474:346..2193+

>mRNA_M-pyrifera_M_contig7474.17676.1 ID=mRNA_M-pyrifera_M_contig7474.17676.1|Name=mRNA_M-pyrifera_M_contig7474.17676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig7474:346..2193+ (Macrocystis pyrifera P11B4 male)
CCGCACTTCCGCGCGTGCATCGTCTGCCAGCGCTTGGGGGGCGCCCCTCC
CGTCACCCCCCCCGCTGCCGCACTTCCGCGCGTGCATCGTCTGCCAGCGC
TTGGGGGGCGCCCCTCCCGTCACCCCCCCCGCTGAGCCGCCGCTACCGCC
CCTCCTCCTGTGCAGCACCTGTCCGGCGTCTTTCCACCTCTCTTGCCTGA
GGCCGCGCCTGAGGGTGATGCCGACGGGGGGTGGGTGGAGCTGCGCCTAC
TGCTTCGCGACGGGGCGGGCGGTTGGGGAAGACCCGGACGGGGCTTGCGG
GGCGGTACGGCTGATGGAAAGCCTTCGGCAGGGGATGCAGGGATCCATTC
GGAGCCGCCGCTACCGCCCCTCCTCCTGTGCAGCACCTGTCCGGCGTCTT
TCCACCTCTCTTGCCTGAGGCCGCGCCTGAGGGTGATGCCGACGGGGGGT
GGGTGGAGCTGCGCCTACTGCTTCGCGACGGGGCGGGCGGTTGGGGAAGA
CCCGGACGGGGCTTGCGGGGCGGTACGGCTGATGGAAAGCCTTCGGCAGG
GGATGCAGGGATCCATTCGGGTAAACGCCATGCGGACGCTGCGCTACAAT
GCCATCGGATGAGTAAACGCCATGCGGACGCTGCGCTACAATGCCATCGG
ATGA
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