prot_M-pyrifera_M_contig74645.17658.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig74645.17658.1
Unique Nameprot_M-pyrifera_M_contig74645.17658.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length108
Homology
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A2C9K2H3_BIOGL (60S ribosomal export protein NMD3 n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9K2H3_BIOGL)

HSP 1 Score: 118 bits (295), Expect = 1.260e-30
Identity = 62/105 (59.05%), Postives = 69/105 (65.71%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 108
            N  NMC  CL +DVDIT ++P    L  C  C R +     WI AE ES ELL VCLK LKGL  +KLVDA F+WTEPHS R+KVKLTVQKEVM G   QQ  IV
Sbjct:   29 NPTNMCVDCLRSDVDITEDIPKTSALSFCRSCERYLQPPNQWIKAELESRELLAVCLKKLKGLSKVKLVDAGFVWTEPHSMRVKVKLTVQKEVMNGALLQQVFIV 133          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A8J4VC26_9ROSI (60S ribosomal export protein NMD3 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VC26_9ROSI)

HSP 1 Score: 112 bits (280), Expect = 1.570e-29
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 0
Query:    1 MISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 108
            M  N  NMC  CL ++VDIT  L   V ++ C +CN  +   R WI A+ ES ELLT C+K LK L  ++LV A+FIWTEPHS+R+KVKL VQKEV+ G   +QS +V
Sbjct:   35 MAPNAANMCVKCLRSEVDITEGLQKHVIIMHCPECNSYLQPPRTWIKAQLESKELLTFCVKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLKVQKEVLNGAILEQSYVV 142          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A0B7A4G4_9EUPU (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A4G4_9EUPU)

HSP 1 Score: 114 bits (286), Expect = 1.980e-29
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQ 104
            N  NMC +CL +DVDIT ++P    L  C  C R +     W+ A  ES ELL+VCLK LKGL  +KL+DA F+WTEPHS R+KVKLTVQKEVM G   QQ
Sbjct:   30 NPTNMCVNCLRSDVDITEDIPKSSVLSFCRGCERYLQPPNQWVKATLESRELLSVCLKKLKGLAKVKLIDAGFVWTEPHSMRIKVKLTVQKEVMNGAVLQQ 130          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A165F124_EXIGL (60S ribosomal export protein NMD3 n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165F124_EXIGL)

HSP 1 Score: 119 bits (298), Expect = 2.790e-29
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQ 104
            N  N+C +CL   VDIT  +P +  L  C  C R ++   AW IAEPES ELL +CLK LKGL  ++LVDA F+WTEPHSRR+KVKLT+QKEV  G   QQ
Sbjct:   24 NSANLCVACLRNSVDITEGIPKQSALSHCRNCERFLSPPNAWTIAEPESRELLALCLKKLKGLNKVRLVDAAFVWTEPHSRRIKVKLTIQKEVFAGTILQQ 124          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A7S3BZ31_9VIRI (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZ31_9VIRI)

HSP 1 Score: 115 bits (287), Expect = 3.350e-29
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 0
Query:    1 MISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 108
            M  N  NMC +C+   +DIT ++P +  ++ C+ C + +   + W+ AE ES ELLT C+K LKGL  LKLVDA FIWTEPHS++LKVKLTVQ EV+ G   QQS +V
Sbjct:    1 MPPNPTNMCVTCVRTQIDITKDIPRRCTVIYCNTCGKYLQPPKHWLRAELESKELLTFCVKRLKGLNKLKLVDAGFIWTEPHSKQLKVKLTVQAEVLNGAILQQSCVV 108          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A7S0RDD9_9CHLO (60S ribosomal export protein NMD3 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RDD9_9CHLO)

HSP 1 Score: 118 bits (296), Expect = 4.790e-29
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0
Query:    3 SNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQS 105
            +N  NMC +C+   VDIT  +  +V ++ C +CN+ +   +AW+ AE ES ELLT C+K LKGL  +KLVDA FIWTEPHS+RLKVKLT+QKEV  G   QQ+
Sbjct:   22 ANPANMCVNCIRGQVDITEGIQKEVTIMWCKECNKYLAPPKAWVRAELESKELLTFCIKKLKGLNKVKLVDAGFIWTEPHSKRLKVKLTIQKEVFHGTILQQT 124          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A1S3KGE3_LINUN (60S ribosomal export protein NMD3 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KGE3_LINUN)

HSP 1 Score: 118 bits (295), Expect = 5.670e-29
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQ 104
            N  NMC +CL ADVDIT  +P +  +  C  C R +    AW+ A  ES ELLTVCLK LKGL  ++LVDA FIWTEPHS+R+KVKLT+QKEV+ G   QQ
Sbjct:   27 NPTNMCIACLRADVDITEGIPKQGTIYFCRNCERYLQPPSAWVAASLESRELLTVCLKKLKGLNKVRLVDAGFIWTEPHSKRIKVKLTIQKEVVNGAVLQQ 127          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A7S0M294_9CRYP (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M294_9CRYP)

HSP 1 Score: 117 bits (294), Expect = 7.430e-29
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 0
Query:    1 MISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQS 105
            M+ N  +MCA+C+   VDIT  +P  V +  C  C R +   + W+  +PES ELL++CLK +KGL  +KL+DA FIWTEPH RRLKVKLTVQKEV  GV  QQ+
Sbjct:   43 MVWNPASMCANCIRTRVDITEGIPKSVPMQCCRACGRFLNPPKHWVACQPESKELLSICLKRIKGLNKVKLIDASFIWTEPHCRRLKVKLTVQKEVYSGVILQQA 147          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: R7V0G8_CAPTE (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V0G8_CAPTE)

HSP 1 Score: 110 bits (274), Expect = 1.240e-28
Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGL-KHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 108
            N  NMC +CL A VDI+  +P +  L  C QC R +     W+ A  ES ELL VCLK +KG+ K ++LVDA FIWTEPHS+RLKVK+T+QKEVM G   QQ  IV
Sbjct:   14 NPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLKAALESRELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVFIV 119          
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Match: A0A814BZ28_9BILA (60S ribosomal export protein NMD3 n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814BZ28_9BILA)

HSP 1 Score: 117 bits (292), Expect = 1.510e-28
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 0
Query:    4 NRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEPESTELLTVCLKLLKGL-KHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGVQFQQSKIV 108
            N +NMC+ CL   +DIT ++P + +L  C++C R +     WI AE ES ELLTVCLK +KGL K ++L DA FIWTEPHS+R+KVKLTVQKEVM G   QQ+ IV
Sbjct:   29 NALNMCSGCLQTQIDITDQIPKQGQLQMCNKCIRYLQPPNTWISAELESRELLTVCLKRIKGLNKEVRLTDAGFIWTEPHSKRVKVKLTVQKEVMTGAILQQTFIV 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74645.17658.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9K2H3_BIOGL1.260e-3059.0560S ribosomal export protein NMD3 n=1 Tax=Biomphal... [more]
A0A8J4VC26_9ROSI1.570e-2951.8560S ribosomal export protein NMD3 n=1 Tax=Castanea... [more]
A0A0B7A4G4_9EUPU1.980e-2956.4460S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A165F124_EXIGL2.790e-2956.4460S ribosomal export protein NMD3 n=1 Tax=Exidia g... [more]
A0A7S3BZ31_9VIRI3.350e-2951.8560S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7S0RDD9_9CHLO4.790e-2954.3760S ribosomal export protein NMD3 n=1 Tax=Pyramimo... [more]
A0A1S3KGE3_LINUN5.670e-2957.4360S ribosomal export protein NMD3 n=1 Tax=Lingula ... [more]
A0A7S0M294_9CRYP7.430e-2953.3360S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
R7V0G8_CAPTE1.240e-2854.7260S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A814BZ28_9BILA1.510e-2856.6060S ribosomal export protein NMD3 n=1 Tax=Didymoda... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 7..107
e-value: 4.5E-25
score: 88.5
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 3..108
NoneNo IPR availablePANTHERPTHR12746:SF260S RIBOSOMAL EXPORT PROTEIN NMD3coord: 3..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74645contigM-pyrifera_M_contig74645:1..324 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74645.17658.1mRNA_M-pyrifera_M_contig74645.17658.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig74645 1..345 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig74645.17658.1 ID=prot_M-pyrifera_M_contig74645.17658.1|Name=mRNA_M-pyrifera_M_contig74645.17658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MISNRVNMCASCLAADVDITTELPDKVELVECSQCNRVMTGSRAWIIAEP
ESTELLTVCLKLLKGLKHLKLVDAKFIWTEPHSRRLKVKLTVQKEVMRGV
QFQQSKIV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3