prot_M-pyrifera_M_contig74429.17620.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig74429.17620.1
Unique Name	prot_M-pyrifera_M_contig74429.17620.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	122

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Match: A0A5A8DVQ5_CAFRO (Ion_trans_2 domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVQ5_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 9.970e-20
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 0

Query:    3 QLFVAVVVAFAGIYTVVFFVGPTP-PFSVPQRAW---RGAFNAVKNDVSAVIAVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGFGIGVVGEAYARRQALKE 117
            Q ++A+V+AF GIY ++F +G     F+VP+RAW   RG     ++  S ++A+ FEF+YFS +V S+ GFGDV P AW AR+  +    ++ I N V+LG+G+  +GEA   R+A+K 
Sbjct:   97 QAYLALVIAFGGIYLLIFLLGAGENAFTVPERAWQDPRGGEQPTQSG-SVLLALVFEFMYFSFAVQSSTGFGDVAPSAWYARLACIAHILISTIFNSVVLGYGLAHIGEASRAREAVKR 214

[Close]

BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Match: A0A5A8CB63_CAFRO (Ion_trans_2 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CB63_CAFRO)

HSP 1 Score: 90.9 bits (224), Expect = 9.970e-20
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 0

Query:    3 QLFVAVVVAFAGIYTVVFFVGPTP-PFSVPQRAW---RGAFNAVKNDVSAVIAVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGFGIGVVGEAYARRQALKE 117
            Q ++A+V+AF GIY ++F +G     F+VP+RAW   RG     ++  S ++A+ FEF+YFS +V S+ GFGDV P AW AR+  +    ++ I N V+LG+G+  +GEA   R+A+K 
Sbjct:   97 QAYLALVIAFGGIYLLIFLLGAGENAFTVPERAWQDPRGGEQPTQSG-SVLLALVFEFMYFSFAVQSSTGFGDVAPSAWYARLACIAHILISTIFNSVVLGYGLAHIGEASRAREAVKR 214

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig74429.17620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A5A8DVQ5_CAFRO	9.970e-20	42.02	Ion_trans_2 domain-containing protein n=2 Tax=Cafe...	[more]
A0A5A8CB63_CAFRO	9.970e-20	42.02	Ion_trans_2 domain-containing protein n=1 Tax=Cafe...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.70		coord: 30..117 e-value: 2.3E-11 score: 45.0
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..69
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..110
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 111..121
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 70..88
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 7..117
None	No IPR available	TMHMM	TMhelix		coord: 47..69
None	No IPR available	TMHMM	TMhelix		coord: 4..26
None	No IPR available	TMHMM	TMhelix		coord: 84..106
IPR013099	Potassium channel domain	PFAM	PF07885	Ion_trans_2	coord: 52..98 e-value: 1.2E-7 score: 31.5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig74429	contig	M-pyrifera_M_contig74429:641..1006 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig74429.17620.1	mRNA_M-pyrifera_M_contig74429.17620.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig74429 641..1006 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig74429.17620.1 ID=prot_M-pyrifera_M_contig74429.17620.1|Name=mRNA_M-pyrifera_M_contig74429.17620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
IFQLFVAVVVAFAGIYTVVFFVGPTPPFSVPQRAWRGAFNAVKNDVSAVI
AVFFEFIYFSLSVASTAGFGDVVPQAWLARIIVMFQAQVAMILNIVLLGF
GIGVVGEAYARRQALKERWLA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013099	K_chnl_dom