mRNA_M-pyrifera_M_contig100821.176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100821.176.1
Unique NamemRNA_M-pyrifera_M_contig100821.176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100821.176.1 vs. uniprot
Match: UPI001E6747E3 (uncharacterized protein LOC123763147 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6747E3)

HSP 1 Score: 59.3 bits (142), Expect = 5.670e-8
Identity = 32/83 (38.55%), Postives = 40/83 (48.19%), Query Frame = 1 
Query:   49 CPFYHTLLDGRRSPLHFTYSNQRCSDAPSDDKGKCSKGAMCPMAHNDCEHFYHPDFVRKSVCMYADNPSQC--KGPLCSFMHP 291
            C  YH LLD RRSP  + YS++ C       + KC+K   CP AH   E  YH    R  VC   +    C  K  +C F+HP
Sbjct: 3959 CSGYHNLLDRRRSPGFYEYSDEMCRAVIQ--RTKCAKQDSCPYAHTTVERDYHVKRFRSLVCPGRNKAHFCSKKKEVCPFVHP 4039
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100821.176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E6747E35.670e-838.55uncharacterized protein LOC123763147 n=1 Tax=Proca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100821contigM-pyrifera_M_contig100821:255..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog5932.XP_004036416.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc finger
EggNOG OGs3ZD06@5878,KOG1595@1,KOG1595@2759
COG Functional cat.S
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815505.2504086-CDS-M-pyrifera_M_contig100821:254..5751622815505.2504086-CDS-M-pyrifera_M_contig100821:254..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100821 255..575 +
1692277441.5570734-CDS-M-pyrifera_M_contig100821:254..5751692277441.5570734-CDS-M-pyrifera_M_contig100821:254..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100821 255..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100821.176.1prot_M-pyrifera_M_contig100821.176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100821 255..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100821.176.1

>prot_M-pyrifera_M_contig100821.176.1 ID=prot_M-pyrifera_M_contig100821.176.1|Name=mRNA_M-pyrifera_M_contig100821.176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
LQTHRCQRVFKHDWFKCPFYHTLLDGRRSPLHFTYSNQRCSDAPSDDKGK
CSKGAMCPMAHNDCEHFYHPDFVRKSVCMYADNPSQCKGPLCSFMHPAEM
MRRDFTE
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mRNA from alignment at M-pyrifera_M_contig100821:255..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100821.176.1 ID=mRNA_M-pyrifera_M_contig100821.176.1|Name=mRNA_M-pyrifera_M_contig100821.176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig100821:255..575+ (Macrocystis pyrifera P11B4 male)
CTACAGACTCACCGCTGTCAACGAGTCTTCAAGCACGACTGGTTCAAATG
CCCCTTCTACCACACCCTGCTCGACGGCAGGAGATCTCCGTTGCACTTTA
CCTACAGTAACCAGAGATGTTCCGATGCGCCATCTGACGACAAGGGCAAG
TGCTCGAAAGGTGCAATGTGCCCGATGGCACACAACGACTGCGAACACTT
TTACCACCCAGACTTTGTTCGGAAGAGTGTGTGCATGTATGCCGACAACC
CATCGCAATGCAAGGGGCCCTTGTGCAGCTTCATGCACCCTGCTGAGATG
ATGCGCCGAGATTTCACCGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100821:255..575+

>mRNA_M-pyrifera_M_contig100821.176.1 ID=mRNA_M-pyrifera_M_contig100821.176.1|Name=mRNA_M-pyrifera_M_contig100821.176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig100821:255..575+ (Macrocystis pyrifera P11B4 male)
CTACAGACTCACCGCTGTCAACGAGTCTTCAAGCACGACTGGTTCAAATG
CCCCTTCTACCACACCCTGCTCGACGGCAGGAGATCTCCGTTGCACTTTA
CCTACAGTAACCAGAGATGTTCCGATGCGCCATCTGACGACAAGGGCAAG
TGCTCGAAAGGTGCAATGTGCCCGATGGCACACAACGACTGCGAACACTT
TTACCACCCAGACTTTGTTCGGAAGAGTGTGTGCATGTATGCCGACAACC
CATCGCAATGCAAGGGGCCCTTGTGCAGCTTCATGCACCCTGCTGAGATG
ATGCGCCGAGATTTCACCGAGCTACAGACTCACCGCTGTCAACGAGTCTT
CAAGCACGACTGGTTCAAATGCCCCTTCTACCACACCCTGCTCGACGGCA
GGAGATCTCCGTTGCACTTTACCTACAGTAACCAGAGATGTTCCGATGCG
CCATCTGACGACAAGGGCAAGTGCTCGAAAGGTGCAATGTGCCCGATGGC
ACACAACGACTGCGAACACTTTTACCACCCAGACTTTGTTCGGAAGAGTG
TGTGCATGTATGCCGACAACCCATCGCAATGCAAGGGGCCCTTGTGCAGC
TTCATGCACCCTGCTGAGATGATGCGCCGAGATTTCACCGAG
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