Homology
BLAST of mRNA_M-pyrifera_M_contig74217.17580.1 vs. uniprot
Match: UPI0019A52CE0 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A52CE0) HSP 1 Score: 106 bits (265), Expect = 7.890e-27 Identity = 63/139 (45.32%), Postives = 83/139 (59.71%), Query Frame = 1 Query: 1 MTVRK-GFEGQALYGTAGTTASTLLENCRDITYNVENEFGDTTVRGDGSAVPIQTQSKTLRTMSIEITMLHDDIDTAFQALQTAAGGSDPVAIRTRSYSSGKGYDGDCHVAMGNPYPMAGEQLTTFTLTPTRDGGRMPQ 414
M V+K GFEG+ YG AG+ ST + N RDIT + + GDTTVRG G+ PI+T R IE M++ DT AL AA +PVAIRT++++SG GYDGD ++ + P+ GEQ F+ TP D R PQ
Sbjct: 1 MPVKKMGFEGKIYYGVAGSAGSTEITNSRDITESFDTGDGDTTVRGAGTNPPIETSRVVSRKYGIEWQMIYKSDDTTLLALIAAAVAGNPVAIRTKAFTSGLGYDGDMNIKYKHGKPLKGEQTLDFSGTPN-DDSRDPQ 138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 426 |
Cds size | 426 |
Stop | 1 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816640.827368-CDS-M-pyrifera_M_contig74217:83..509 | 1622816640.827368-CDS-M-pyrifera_M_contig74217:83..509 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74217 84..509 - |
1692278093.4589577-CDS-M-pyrifera_M_contig74217:83..509 | 1692278093.4589577-CDS-M-pyrifera_M_contig74217:83..509 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74217 84..509 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74217.17580.1 >prot_M-pyrifera_M_contig74217.17580.1 ID=prot_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MTVRKGFEGQALYGTAGTTASTLLENCRDITYNVENEFGDTTVRGDGSAV PIQTQSKTLRTMSIEITMLHDDIDTAFQALQTAAGGSDPVAIRTRSYSSG KGYDGDCHVAMGNPYPMAGEQLTTFTLTPTRDGGRMPQAWV* back to topmRNA from alignment at M-pyrifera_M_contig74217:84..509- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig74217.17580.1 ID=mRNA_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:84..509- (Macrocystis pyrifera P11B4 male) ATGACAGTACGAAAAGGCTTTGAAGGGCAGGCACTTTACGGCACCGCAGG
CACTACCGCCAGCACGCTTCTGGAGAACTGTCGAGACATTACCTACAACG
TCGAAAACGAGTTCGGTGATACGACCGTTCGCGGCGATGGCTCGGCAGTC
CCGATCCAGACGCAAAGCAAAACCCTGCGAACCATGAGCATTGAAATCAC
GATGTTGCATGATGACATCGATACCGCATTCCAAGCCCTGCAAACCGCCG
CCGGTGGAAGTGACCCGGTAGCTATTCGCACTAGGAGCTACTCCAGCGGC
AAGGGATACGACGGGGACTGCCATGTAGCCATGGGCAACCCTTACCCGAT
GGCCGGCGAACAGTTGACCACCTTCACGCTTACGCCGACTCGCGATGGTG
GCCGGATGCCGCAAGCCTGGGTTTAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig74217:84..509- >mRNA_M-pyrifera_M_contig74217.17580.1 ID=mRNA_M-pyrifera_M_contig74217.17580.1|Name=mRNA_M-pyrifera_M_contig74217.17580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig74217:84..509- (Macrocystis pyrifera P11B4 male) ATGACAGTACGAAAAGGCTTTGAAGGGCAGGCACTTTACGGCACCGCAGG CACTACCGCCAGCACGCTTCTGGAGAACTGTCGAGACATTACCTACAACG TCGAAAACGAGTTCGGTGATACGACCGTTCGCGGCGATGGCTCGGCAGTC CCGATCCAGACGCAAAGCAAAACCCTGCGAACCATGAGCATTGAAATCAC GATGTTGCATGATGACATCGATACCGCATTCCAAGCCCTGCAAACCGCCG CCGGTGGAAGTGACCCGGTAGCTATTCGCACTAGGAGCTACTCCAGCGGC AAGGGATACGACGGGGACTGCCATGTAGCCATGGGCAACCCTTACCCGAT GGCCGGCGAACAGTTGACCACCTTCACGCTTACGCCGACTCGCGATGGTG GCCGGATGCCGCAAGCCTGGGTTTAAATGACAGTACGAAAAGGCTTTGAA GGGCAGGCACTTTACGGCACCGCAGGCACTACCGCCAGCACGCTTCTGGA GAACTGTCGAGACATTACCTACAACGTCGAAAACGAGTTCGGTGATACGA CCGTTCGCGGCGATGGCTCGGCAGTCCCGATCCAGACGCAAAGCAAAACC CTGCGAACCATGAGCATTGAAATCACGATGTTGCATGATGACATCGATAC CGCATTCCAAGCCCTGCAAACCGCCGCCGGTGGAAGTGACCCGGTAGCTA TTCGCACTAGGAGCTACTCCAGCGGCAAGGGATACGACGGGGACTGCCAT GTAGCCATGGGCAACCCTTACCCGATGGCCGGCGAACAGTTGACCACCTT CACGCTTACGCCGACTCGCGATGGTGGCCGGATGCCGCAAGCCTGGGTTT AA back to top
|