Homology
BLAST of mRNA_M-pyrifera_M_contig74007.17525.1 vs. uniprot
Match: D8LCQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ3_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 3.080e-11 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 1 VYMTDKFFDPASTNTALHNPWDALPSYWSDLVKAVG 108
VYMTDK +DP S N A HNPWDA+P+YW+DL KAVG
Sbjct: 266 VYMTDKIYDPDSDNPAHHNPWDAVPTYWADLAKAVG 301
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | no signal peptide or anchor |
Ec32 ortholog description | Spherulation-specific family 4 |
Ec32 ortholog | Ec-03_002020.1 |
Exons | 1 |
Model size | 126 |
Cds size | 120 |
Stop | 0 |
Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816637.778859-CDS-M-pyrifera_M_contig74007:712..832 | 1622816637.778859-CDS-M-pyrifera_M_contig74007:712..832 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74007 713..832 - |
1692278091.7244167-CDS-M-pyrifera_M_contig74007:712..832 | 1692278091.7244167-CDS-M-pyrifera_M_contig74007:712..832 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig74007 713..832 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816637.7900674-UTR-M-pyrifera_M_contig74007:832..838 | 1622816637.7900674-UTR-M-pyrifera_M_contig74007:832..838 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig74007 833..838 - |
1692278091.7352877-UTR-M-pyrifera_M_contig74007:832..838 | 1692278091.7352877-UTR-M-pyrifera_M_contig74007:832..838 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig74007 833..838 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig74007.17525.1 >prot_M-pyrifera_M_contig74007.17525.1 ID=prot_M-pyrifera_M_contig74007.17525.1|Name=mRNA_M-pyrifera_M_contig74007.17525.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MTDKFFDPASTNTALHNPWDALPSYWSDLVKAVGLANEKA back to topmRNA from alignment at M-pyrifera_M_contig74007:713..838- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig74007.17525.1 ID=mRNA_M-pyrifera_M_contig74007.17525.1|Name=mRNA_M-pyrifera_M_contig74007.17525.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=126bp|location=Sequence derived from alignment at M-pyrifera_M_contig74007:713..838- (Macrocystis pyrifera P11B4 male) GTCTACATGACGGACAAGTTTTTCGACCCTGCCTCGACGAATACGGCCCT
CCACAACCCGTGGGATGCACTACCGTCGTACTGGAGCGATCTCGTAAAGG
CGGTAGGCTTGGCCAACGAAAAGGCG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig74007:713..838- >mRNA_M-pyrifera_M_contig74007.17525.1 ID=mRNA_M-pyrifera_M_contig74007.17525.1|Name=mRNA_M-pyrifera_M_contig74007.17525.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig74007:713..838- (Macrocystis pyrifera P11B4 male) ATGACGGACAAGTTTTTCGACCCTGCCTCGACGAATACGGCCCTCCACAA CCCGTGGGATGCACTACCGTCGTACTGGAGCGATCTCGTAAAGGCGGTAG GCTTGGCCAACGAAAAGGCGATGACGGACAAGTTTTTCGACCCTGCCTCG ACGAATACGGCCCTCCACAACCCGTGGGATGCACTACCGTCGTACTGGAG CGATCTCGTAAAGGCGGTAGGCTTGGCCAACGAAAAGGCG back to top
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